Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 N 1.46498 * 109.47431 * 300.00581 * 3 2 1 5 5 C 1.36936 * 119.99918 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00417 * 359.97438 * 5 4 3 7 7 C 1.38811 * 119.99870 * 179.97438 * 5 4 3 8 8 N 1.31621 * 120.00386 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47228 * 90.00155 * 9 7 5 11 11 H 1.48502 * 109.47350 * 210.00501 * 9 7 5 12 12 H 1.48505 * 109.46845 * 330.00263 * 9 7 5 13 13 N 1.46503 * 109.46930 * 240.00410 * 2 1 3 14 14 C 1.34775 * 120.00041 * 175.39209 * 13 2 1 15 15 O 1.21688 * 119.99939 * 355.82926 * 14 13 2 16 16 C 1.46677 * 119.99843 * 175.83053 * 14 13 2 17 17 C 1.37874 * 126.23244 * 179.97438 * 16 14 13 18 18 C 1.39840 * 107.08477 * 180.02562 * 17 16 14 19 19 C 1.35447 * 107.86656 * 0.02562 * 18 17 16 20 20 N 1.35535 * 108.86994 * 0.25907 * 19 18 17 21 21 H 0.97004 * 125.67626 * 179.71820 * 20 19 18 22 22 C 1.52995 * 109.47259 * 120.00655 * 2 1 3 23 23 C 1.53001 * 117.50086 * 121.76029 * 22 2 1 24 24 C 1.52994 * 117.49963 * 53.13429 * 22 2 1 25 25 H 1.09001 * 109.47648 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46750 * 299.99777 * 1 2 3 27 27 H 1.09002 * 109.47422 * 59.99389 * 1 2 3 28 28 H 1.09001 * 109.47059 * 60.00412 * 3 2 1 29 29 H 1.09001 * 109.47472 * 180.02562 * 3 2 1 30 30 H 0.96999 * 120.00430 * 359.97438 * 4 3 2 31 31 H 0.96996 * 120.00508 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99919 * 355.39614 * 13 2 1 33 33 H 1.08004 * 126.45735 * 0.06286 * 17 16 14 34 34 H 1.08001 * 126.06261 * 179.97438 * 18 17 16 35 35 H 1.08003 * 125.56487 * 180.02562 * 19 18 17 36 36 H 1.08998 * 115.54845 * 267.46688 * 22 2 1 37 37 H 1.09003 * 117.49508 * 359.97438 * 23 22 2 38 38 H 1.08994 * 117.49878 * 145.02139 * 23 22 2 39 39 H 1.09005 * 117.49956 * 214.97871 * 24 22 2 40 40 H 1.09000 * 117.50286 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8829 3.4440 -1.4129 6 1 2.5039 3.9689 -0.7021 7 6 1.4206 4.0983 -2.5465 8 7 1.7385 5.3585 -2.7548 9 14 0.3471 3.1905 -3.7765 10 1 -1.0808 3.3541 -3.4028 11 1 0.5704 3.7479 -5.1347 12 1 0.6983 1.7476 -3.7697 13 7 2.0183 -0.6905 -1.1963 14 6 3.3398 -0.7331 -1.4576 15 8 4.1210 -0.1343 -0.7421 16 6 3.8362 -1.5012 -2.6043 17 6 5.1538 -1.6319 -2.9887 18 6 5.1712 -2.4453 -4.1261 19 6 3.8924 -2.7892 -4.4106 20 7 3.0709 -2.2169 -3.4970 21 1 2.1047 -2.3001 -3.4743 22 6 2.0400 -0.7214 1.2491 23 6 2.9490 -1.9346 1.0426 24 6 1.5079 -2.1304 1.5179 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 0.9942 1.6618 -1.8348 31 1 1.4158 5.8156 -3.5471 32 1 1.3904 -1.1171 -1.8003 33 1 6.0110 -1.1899 -2.5026 34 1 6.0486 -2.7453 -4.6798 35 1 3.5782 -3.4140 -5.2336 36 1 2.2377 -0.0850 2.1117 37 1 3.1833 -2.2191 0.0168 38 1 3.7450 -2.0966 1.7694 39 1 1.3559 -2.4212 2.5574 40 1 0.7948 -2.5437 0.8047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715113047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = 65.703195 kcal Electronic energy + Delta-G solvation = -22483.050683 eV Core-core repulsion = 19300.574197 eV Total energy + Delta-G solvation = -3182.476486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30732 -39.96755 -37.07257 -35.12849 -33.49502 -31.75589 -30.93373 -30.10762 -28.81472 -26.35641 -23.71549 -22.91401 -22.17344 -21.16028 -20.74646 -20.00417 -19.15427 -18.81397 -17.75226 -16.10425 -15.73450 -15.39674 -14.71081 -14.48651 -14.01285 -13.82629 -13.71583 -13.53789 -13.35936 -12.85408 -12.64462 -12.33479 -12.24370 -12.17077 -12.00268 -11.59919 -11.24155 -11.05162 -10.89021 -10.85151 -10.22011 -10.20183 -10.00452 -9.55117 -9.46228 -9.00289 -8.81167 -8.72838 -8.19030 -7.10084 -5.69867 -3.02928 1.60570 2.79296 3.08257 3.28745 3.33112 3.35527 3.43377 3.66801 3.93460 4.61950 4.70501 4.91281 4.98584 5.02804 5.08431 5.27672 5.36362 5.39803 5.49310 5.55753 5.61535 5.67422 5.69800 5.90684 6.02703 6.07450 6.09672 6.18281 6.19616 6.25731 6.36192 6.48776 6.68247 6.85538 6.94750 7.09401 7.33006 7.75486 8.08379 8.48486 8.51697 9.28769 10.00819 10.21534 11.49368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.007692 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.663022 B = 3639.377442 C = 4889.383298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.198 3.802 3 C 0.143 3.857 4 N -0.749 5.749 5 C -0.231 4.231 6 H 0.090 0.910 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.884 3.116 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.723 5.723 14 C 0.595 3.405 15 O -0.505 6.505 16 C -0.048 4.048 17 C -0.111 4.111 18 C -0.212 4.212 19 C 0.013 3.987 20 N -0.541 5.541 21 H 0.413 0.587 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.183 4.183 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.356 0.644 31 H 0.258 0.742 32 H 0.386 0.614 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -21.366 1.629 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.112 3.888 3 C 0.016 3.984 4 N -0.395 5.395 5 C -0.361 4.361 6 H 0.108 0.892 7 C -0.195 4.195 8 N -0.585 5.585 9 Si 0.715 3.285 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.210 1.210 13 N -0.374 5.374 14 C 0.382 3.618 15 O -0.379 6.379 16 C -0.161 4.161 17 C -0.137 4.137 18 C -0.236 4.236 19 C -0.122 4.122 20 N -0.138 5.138 21 H 0.250 0.750 22 C -0.163 4.163 23 C -0.200 4.200 24 C -0.220 4.220 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.189 0.811 31 H 0.068 0.932 32 H 0.219 0.781 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.236 -20.670 2.259 20.795 hybrid contribution -1.567 -0.767 -1.489 2.293 sum -1.803 -21.437 0.771 21.527 Atomic orbital electron populations 1.22011 0.93293 1.01454 1.03904 1.20141 0.93561 0.92876 0.82225 1.21175 0.99841 0.87138 0.90284 1.42588 1.62018 1.11063 1.23824 1.19084 1.25749 0.85561 1.05679 0.89212 1.24635 1.00899 0.95852 0.98068 1.69692 1.50176 1.09704 1.28972 0.86548 0.80997 0.78895 0.82014 1.21274 1.21870 1.20996 1.45953 1.06853 1.57836 1.26786 1.16800 0.82339 0.79808 0.82856 1.90823 1.55761 1.42801 1.48495 1.20716 0.92073 1.06055 0.97244 1.21326 0.94781 1.00348 0.97273 1.20873 0.96495 1.05504 1.00760 1.21962 0.90682 1.03040 0.96530 1.42037 1.09067 1.39504 1.23146 0.75005 1.22540 1.04140 0.90260 0.99365 1.22940 0.92860 1.01975 1.02187 1.22958 0.97515 0.99957 1.01580 0.92678 0.90370 0.91630 0.95136 0.91691 0.81119 0.93227 0.78140 0.83525 0.84113 0.81520 0.86974 0.89036 0.89229 0.89168 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.17 37.16 0.30 -1.69 16 2 C 0.20 3.06 0.55 -131.82 -0.07 2.99 16 3 C 0.14 2.97 4.83 -4.04 -0.02 2.95 16 4 N -0.75 -18.25 4.98 -59.91 -0.30 -18.55 16 5 C -0.23 -6.79 10.47 -15.06 -0.16 -6.95 16 6 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 7 C 0.00 0.01 5.50 -17.43 -0.10 -0.08 16 8 N -0.94 -30.32 13.97 55.49 0.78 -29.54 16 9 Si 0.88 22.56 27.73 -169.99 -4.71 17.85 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 12 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 13 N -0.72 -10.63 4.20 -48.90 -0.21 -10.84 16 14 C 0.59 10.09 4.79 -12.85 -0.06 10.03 16 15 O -0.50 -10.32 13.16 5.20 0.07 -10.25 16 16 C -0.05 -0.71 7.06 -81.98 -0.58 -1.29 16 17 C -0.11 -1.62 10.65 -39.12 -0.42 -2.04 16 18 C -0.21 -2.49 10.81 -39.98 -0.43 -2.92 16 19 C 0.01 0.13 11.89 -16.91 -0.20 -0.07 16 20 N -0.54 -5.98 5.99 -9.39 -0.06 -6.04 16 21 H 0.41 3.37 8.20 -40.82 -0.33 3.04 16 22 C -0.14 -1.98 4.86 -90.62 -0.44 -2.42 16 23 C -0.16 -2.15 8.52 -26.73 -0.23 -2.38 16 24 C -0.18 -2.02 9.68 -26.73 -0.26 -2.28 16 25 H 0.05 0.58 6.89 -51.93 -0.36 0.22 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.98 6.86 -51.93 -0.36 0.62 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.53 5.71 -51.93 -0.30 1.24 16 30 H 0.36 8.30 4.21 -40.82 -0.17 8.13 16 31 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 32 H 0.39 4.60 7.62 -40.82 -0.31 4.28 16 33 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.11 1.56 8.06 -51.93 -0.42 1.14 16 37 H 0.09 1.30 5.17 -51.93 -0.27 1.03 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.90 7.17 -51.93 -0.37 0.52 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -35.77 321.58 -7.68 -43.45 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -5.44 Total: 15.22 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.66 Total: -6.14 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.22 Total: -64.97 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.77 -7.68 -43.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715113047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.153 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds