Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21552 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.47840 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.39559 * 120.56037 * 359.72564 * 9 7 6 11 11 N 1.31662 * 120.56573 * 179.74981 * 10 9 7 12 12 C 1.31950 * 121.88119 * 0.53493 * 11 10 9 13 13 C 1.38312 * 121.08189 * 359.73211 * 12 11 10 14 14 C 1.50695 * 120.34994 * 180.02562 * 13 12 11 15 15 C 1.38403 * 119.30317 * 359.97438 * 13 12 11 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 26 26 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08005 * 119.71482 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.46220 * 179.74554 * 12 11 10 35 35 H 1.09001 * 109.47030 * 269.97093 * 14 13 12 36 36 H 1.08999 * 109.47084 * 29.97169 * 14 13 12 37 37 H 1.08996 * 109.47505 * 149.97107 * 14 13 12 38 38 H 1.07994 * 120.85560 * 180.02562 * 15 13 12 39 39 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 40 40 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1650 2.1464 -0.2596 9 6 5.8884 4.4480 0.0345 10 6 5.0036 5.5098 0.2273 11 7 5.4516 6.7427 0.3403 12 6 6.7383 7.0261 0.2667 13 6 7.6786 6.0308 0.0717 14 6 9.1440 6.3730 -0.0092 15 6 7.2598 4.7170 -0.0474 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.5658 5.5007 2.2897 23 1 -2.6061 3.3542 1.8525 24 1 -2.0861 4.0083 4.1289 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 3.9425 5.3181 0.2887 34 1 7.0624 8.0520 0.3606 35 1 9.4133 6.5748 -1.0459 36 1 9.3448 7.2563 0.5970 37 1 9.7338 5.5353 0.3629 38 1 7.9724 3.9201 -0.1998 39 1 2.2720 2.1231 1.9978 40 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753468500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = -24.056963 kcal Electronic energy + Delta-G solvation = -21224.018851 eV Core-core repulsion = 18037.650072 eV Total energy + Delta-G solvation = -3186.368779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75062 -40.25594 -38.43490 -35.61200 -34.71416 -34.33329 -33.19799 -31.33907 -29.47644 -28.19829 -26.08200 -25.12732 -23.91034 -23.64025 -21.84328 -21.20981 -19.47342 -18.89685 -18.00155 -17.65898 -16.84498 -16.62611 -16.36279 -16.03807 -15.49934 -15.29660 -15.14284 -14.70789 -14.40851 -14.27284 -14.18673 -13.71253 -13.56071 -13.49601 -13.21867 -12.84130 -12.72893 -12.60799 -12.13356 -11.97567 -11.83854 -11.56376 -11.40058 -11.18542 -10.94616 -10.88804 -10.53052 -10.24734 -9.97332 -9.07804 -8.26726 -5.22572 -0.46556 0.09673 1.62219 1.70156 1.71011 1.83897 2.03859 2.72952 2.75201 3.22917 3.49166 3.61049 3.71177 3.74363 3.78691 3.82933 3.87481 4.15730 4.25700 4.38768 4.43779 4.47541 4.64144 4.73556 4.76410 4.83086 4.92705 5.00346 5.03505 5.12807 5.14635 5.19618 5.32804 5.46612 5.55869 5.65099 5.73632 6.36380 6.58072 6.77189 6.99558 7.14546 8.04663 8.17164 9.23572 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.004756 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.379051 B = 5885.626361 C = 7217.389661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.058 0.942 5 C 0.120 3.880 6 N -0.705 5.705 7 C 0.559 3.441 8 O -0.576 6.576 9 C -0.194 4.194 10 C 0.122 3.878 11 N -0.505 5.505 12 C 0.116 3.884 13 C -0.137 4.137 14 C -0.106 4.106 15 C -0.030 4.030 16 N -0.740 5.740 17 C -0.306 4.306 18 H 0.073 0.927 19 C -0.102 4.102 20 N -0.980 5.980 21 Si 1.119 2.881 22 H -0.288 1.288 23 H -0.274 1.274 24 H -0.302 1.302 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.194 0.806 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.358 0.642 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 4.025 -10.427 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.356 5.356 7 C 0.347 3.653 8 O -0.457 6.457 9 C -0.199 4.199 10 C -0.036 4.036 11 N -0.213 5.213 12 C -0.040 4.040 13 C -0.139 4.139 14 C -0.163 4.163 15 C -0.056 4.056 16 N -0.382 5.382 17 C -0.437 4.437 18 H 0.090 0.910 19 C -0.294 4.294 20 N -0.628 5.628 21 Si 0.946 3.054 22 H -0.215 1.215 23 H -0.199 1.199 24 H -0.229 1.229 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.171 0.829 34 H 0.211 0.789 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.168 0.832 39 H 0.190 0.810 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.368 4.854 -9.615 15.660 hybrid contribution 1.169 -1.485 -0.455 1.943 sum 12.537 3.370 -10.070 16.429 Atomic orbital electron populations 1.21684 0.95875 1.00596 1.01780 1.21977 0.96734 0.97081 1.01134 1.20662 0.90695 0.93393 0.89178 0.92420 1.21671 0.94436 0.82281 1.01986 1.45930 1.06900 1.11028 1.71736 1.18325 0.82371 0.88405 0.76212 1.90710 1.56621 1.46599 1.51785 1.20948 0.96439 0.93698 1.08835 1.23006 1.00112 0.87635 0.92835 1.67737 1.18488 1.21508 1.13542 1.23566 0.87107 1.01506 0.91858 1.21307 1.00026 0.92494 1.00031 1.20826 0.87516 1.03759 1.04190 1.21818 0.93821 0.97907 0.92098 1.42600 1.15889 1.67353 1.12387 1.20257 0.93198 1.29901 1.00343 0.90957 1.26814 1.08023 1.01934 0.92582 1.70968 1.08612 1.49927 1.33339 0.82701 0.71834 0.75733 0.75109 1.21532 1.19897 1.22932 0.93381 0.93282 0.92735 0.90421 0.93628 0.92662 0.89624 0.75400 0.82861 0.78901 0.89151 0.88906 0.90539 0.83191 0.81008 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.18 71.98 0.66 -4.18 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.17 6.05 2.59 44.99 0.12 6.16 16 4 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 5 C 0.12 3.96 5.23 86.38 0.45 4.41 16 6 N -0.71 -23.61 5.34 -465.98 -2.49 -26.10 16 7 C 0.56 19.10 7.78 86.79 0.68 19.78 16 8 O -0.58 -22.20 16.42 -3.88 -0.06 -22.27 16 9 C -0.19 -5.80 5.89 -19.99 -0.12 -5.92 16 10 C 0.12 3.67 10.71 85.04 0.91 4.58 16 11 N -0.50 -14.33 10.35 -194.76 -2.01 -16.34 16 12 C 0.12 2.42 10.85 84.69 0.92 3.34 16 13 C -0.14 -2.61 5.89 -19.81 -0.12 -2.73 16 14 C -0.11 -1.12 10.03 71.23 0.71 -0.40 16 15 C -0.03 -0.75 9.39 22.73 0.21 -0.53 16 16 N -0.74 -33.42 4.50 -322.94 -1.45 -34.87 16 17 C -0.31 -15.50 7.75 84.03 0.65 -14.85 16 18 H 0.07 3.58 7.32 -2.91 -0.02 3.56 16 19 C -0.10 -5.60 5.50 84.86 0.47 -5.14 16 20 N -0.98 -59.26 13.70 21.65 0.30 -58.96 16 21 Si 1.12 50.58 29.92 68.60 2.05 52.63 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 25 H 0.05 2.00 5.99 -2.38 -0.01 1.99 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 32 H 0.41 13.95 6.20 -92.71 -0.58 13.38 16 33 H 0.15 4.70 6.42 -2.91 -0.02 4.68 16 34 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 37 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 38 H 0.15 3.50 7.74 -2.91 -0.02 3.47 16 39 H 0.36 17.64 6.63 -92.71 -0.61 17.03 16 40 H 0.24 14.72 6.77 -92.71 -0.63 14.09 16 Total: -1.00 -67.41 334.37 2.05 -65.36 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.01 Total: 40.04 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.72 Total: 0.51 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -5.66 Total: -136.27 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -67.41 2.05 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753468500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.300 kcal (2) G-P(sol) polarization free energy of solvation -67.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds