Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.76750 * 2 1 4 4 C 1.55144 * 110.70696 * 236.79699 * 2 1 3 5 5 C 1.54909 * 101.65411 * 205.96576 * 4 2 1 6 6 H 1.09003 * 110.36934 * 278.23948 * 5 4 2 7 7 C 1.50695 * 110.37029 * 155.90194 * 5 4 2 8 8 C 1.38271 * 119.98647 * 104.62996 * 7 5 4 9 9 C 1.38217 * 120.05110 * 179.97438 * 8 7 5 10 10 C 1.38220 * 120.02695 * 359.97438 * 9 8 7 11 11 C 1.38444 * 119.97525 * 0.02562 * 10 9 8 12 12 F 1.35100 * 120.02789 * 180.02562 * 11 10 9 13 13 C 1.38171 * 119.98721 * 284.34403 * 7 5 4 14 14 N 1.47839 * 104.79658 * 37.06764 * 5 4 2 15 15 C 1.46900 * 111.00147 * 213.63621 * 14 5 4 16 16 C 1.52996 * 109.46912 * 175.24758 * 15 14 5 17 17 C 1.50703 * 109.46999 * 174.66516 * 16 15 14 18 18 H 1.07995 * 119.99850 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99584 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47019 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46743 * 120.00313 * 21 19 17 24 24 H 1.48498 * 109.47210 * 240.00302 * 21 19 17 25 25 C 1.47443 * 108.57112 * 335.90831 * 14 5 4 26 26 H 1.09004 * 109.47376 * 298.25485 * 1 2 3 27 27 H 1.09001 * 109.47110 * 58.25405 * 1 2 3 28 28 H 1.08998 * 109.47401 * 178.25481 * 1 2 3 29 29 H 1.08999 * 110.98693 * 87.87602 * 4 2 1 30 30 H 1.08995 * 110.99031 * 324.05935 * 4 2 1 31 31 H 1.07998 * 119.97535 * 359.96913 * 8 7 5 32 32 H 1.08002 * 119.99033 * 180.02562 * 9 8 7 33 33 H 1.08003 * 120.01846 * 179.97438 * 10 9 8 34 34 H 1.08006 * 120.01358 * 0.02562 * 13 7 5 35 35 H 1.09006 * 109.46882 * 295.24600 * 15 14 5 36 36 H 1.09001 * 109.46949 * 55.24907 * 15 14 5 37 37 H 1.09002 * 109.47294 * 294.66568 * 16 15 14 38 38 H 1.09005 * 109.47666 * 54.67107 * 16 15 14 39 39 H 0.97006 * 119.99731 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.89418 * 120.39316 * 25 14 5 41 41 H 1.08999 * 109.88763 * 241.58326 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0785 -0.7947 -1.2143 5 6 3.4650 -1.2467 -0.6919 6 1 4.1930 -0.4431 -0.8036 7 6 3.9258 -2.4794 -1.4260 8 6 4.9083 -2.3806 -2.3939 9 6 5.3323 -3.5104 -3.0677 10 6 4.7749 -4.7407 -2.7742 11 6 3.7911 -4.8410 -1.8053 12 9 3.2459 -6.0431 -1.5173 13 6 3.3706 -3.7089 -1.1275 14 7 3.2489 -1.5502 0.7388 15 6 4.4405 -1.2216 1.5325 16 6 4.1395 -1.4364 3.0171 17 6 5.3973 -1.2263 3.8202 18 1 6.3190 -0.9652 3.3216 19 6 5.3712 -1.3664 5.1916 20 7 4.2486 -1.6838 5.7988 21 14 6.9304 -1.1066 6.1870 22 1 8.0489 -0.7606 5.2735 23 1 6.7213 0.0005 7.1544 24 1 7.2603 -2.3527 6.9243 25 6 2.0756 -0.7905 1.2079 26 1 -0.3634 0.4865 0.9052 27 1 -0.3633 0.5407 -0.8739 28 1 -0.3634 -1.0271 -0.0313 29 1 2.1812 -0.1510 -2.0879 30 1 1.4459 -1.6540 -1.4366 31 1 5.3446 -1.4198 -2.6237 32 1 6.1000 -3.4322 -3.8233 33 1 5.1060 -5.6235 -3.3011 34 1 2.6061 -3.7866 -0.3685 35 1 5.2663 -1.8666 1.2321 36 1 4.7133 -0.1798 1.3641 37 1 3.3791 -0.7255 3.3403 38 1 3.7759 -2.4524 3.1709 39 1 4.2302 -1.7827 6.7637 40 1 1.3132 -1.4762 1.5773 41 1 2.3720 -0.1013 1.9987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075842794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = -31.504410 kcal Electronic energy + Delta-G solvation = -21467.771578 eV Core-core repulsion = 18261.159892 eV Total energy + Delta-G solvation = -3206.611686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.72560 -39.80662 -38.05415 -34.05819 -32.72699 -31.93957 -30.42243 -29.23887 -27.86995 -25.93036 -24.16397 -23.05392 -22.35585 -20.85001 -20.24219 -19.17125 -17.22704 -16.70521 -16.11399 -15.96066 -15.49875 -15.41796 -14.77098 -14.49014 -13.86190 -13.72660 -13.56054 -13.28525 -13.06116 -12.83861 -12.47321 -12.25730 -12.16159 -11.85645 -11.60588 -11.39185 -11.30348 -10.99709 -10.84372 -10.65048 -10.54456 -10.51658 -10.31026 -9.95286 -9.40100 -9.10628 -8.76507 -8.54828 -8.35957 -7.76564 -6.00161 -4.02273 1.24719 1.35311 3.31016 3.38523 3.42444 3.66073 4.33161 4.35114 4.49650 4.67760 4.85585 4.88592 5.01902 5.04406 5.18845 5.32503 5.36064 5.42554 5.56507 5.57329 5.64327 5.74864 5.89320 5.94563 6.02843 6.08270 6.13479 6.18235 6.24966 6.31000 6.33565 6.39215 6.47613 6.57006 6.67437 6.93544 7.02194 7.48574 7.51520 7.75118 7.87792 8.06926 8.42577 9.04688 9.61452 11.11270 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.005070 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.818054 B = 5521.706595 C = 6649.220854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.104 3.896 6 H 0.063 0.937 7 C -0.032 4.032 8 C -0.130 4.130 9 C -0.096 4.096 10 C -0.163 4.163 11 C 0.091 3.909 12 F -0.143 7.143 13 C -0.117 4.117 14 N -0.523 5.523 15 C 0.060 3.940 16 C 0.025 3.975 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.046 3.954 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 0.258 -18.223 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.005 4.005 6 H 0.081 0.919 7 C -0.033 4.033 8 C -0.148 4.148 9 C -0.115 4.115 10 C -0.182 4.182 11 C 0.072 3.928 12 F -0.122 7.122 13 C -0.136 4.136 14 N -0.247 5.247 15 C -0.067 4.067 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.081 4.081 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.129 -0.352 -17.947 18.419 hybrid contribution 1.054 0.700 0.700 1.446 sum -3.075 0.349 -17.247 17.523 Atomic orbital electron populations 1.21704 0.94496 1.01925 1.01428 1.22437 0.96237 0.99273 0.95615 0.90894 1.22812 0.95089 0.99825 0.97344 1.21469 0.96669 0.92672 0.89645 0.91896 1.19616 0.94574 0.94396 0.94682 1.21077 0.97681 0.98890 0.97194 1.20867 0.99363 0.91645 0.99577 1.21067 0.98315 0.99233 0.99558 1.17782 0.96187 0.80844 0.98011 1.91483 1.84674 1.43308 1.92748 1.21055 1.02075 0.90676 0.99754 1.63544 1.05540 1.55393 1.00186 1.22482 0.90412 0.97107 0.96715 1.19182 0.96869 0.97852 0.87349 1.21209 0.95621 1.47301 0.91773 0.92770 1.24987 0.96069 0.95273 0.97952 1.69981 1.25700 1.48310 1.09246 0.86552 0.83598 0.77777 0.80174 1.19775 1.21039 1.20961 1.22934 0.93079 0.95924 0.96177 0.92451 0.93017 0.92393 0.91215 0.90546 0.85780 0.85422 0.85317 0.83898 0.92005 0.96242 0.96384 0.95649 0.93058 0.90741 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.13 37.15 0.34 -1.15 16 2 C -0.12 -1.48 3.54 -88.80 -0.31 -1.79 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.36 5.92 -24.59 -0.15 -1.50 16 5 C 0.10 1.49 2.62 -67.34 -0.18 1.32 16 6 H 0.06 0.90 7.58 -51.93 -0.39 0.51 16 7 C -0.03 -0.45 5.03 -104.64 -0.53 -0.97 16 8 C -0.13 -1.56 9.68 -39.58 -0.38 -1.94 16 9 C -0.10 -1.06 10.04 -39.60 -0.40 -1.46 16 10 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 11 C 0.09 1.30 7.30 -39.41 -0.29 1.01 16 12 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 13 C -0.12 -1.75 9.16 -39.51 -0.36 -2.11 16 14 N -0.52 -9.24 4.22 -224.75 -0.95 -10.19 16 15 C 0.06 1.26 4.79 -3.83 -0.02 1.24 16 16 C 0.02 0.64 4.62 -27.88 -0.13 0.51 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.05 0.76 5.79 -2.83 -0.02 0.75 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 31 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.14 2.27 7.74 -52.48 -0.41 1.87 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.40 7.97 -51.93 -0.41 -0.01 16 37 H 0.02 0.49 6.37 -51.93 -0.33 0.15 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 41 H 0.07 1.28 5.96 -51.93 -0.31 0.97 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -30.20 336.30 -9.78 -39.98 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.43 Total: -1.33 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.23 Total: -21.97 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.21 Total: -36.38 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.20 -9.78 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075842794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.479 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds