Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.76750 * 2 1 4 4 C 1.55144 * 110.70696 * 236.79699 * 2 1 3 5 5 C 1.54909 * 101.65411 * 205.96576 * 4 2 1 6 6 H 1.09003 * 110.36934 * 278.23948 * 5 4 2 7 7 C 1.50695 * 110.37029 * 155.90194 * 5 4 2 8 8 C 1.38271 * 119.98647 * 104.62996 * 7 5 4 9 9 C 1.38217 * 120.05110 * 179.97438 * 8 7 5 10 10 C 1.38220 * 120.02695 * 359.97438 * 9 8 7 11 11 C 1.38444 * 119.97525 * 0.02562 * 10 9 8 12 12 F 1.35100 * 120.02789 * 180.02562 * 11 10 9 13 13 C 1.38171 * 119.98721 * 284.34403 * 7 5 4 14 14 N 1.47839 * 104.79658 * 37.06764 * 5 4 2 15 15 C 1.46900 * 111.00147 * 213.63621 * 14 5 4 16 16 C 1.52996 * 109.46912 * 175.24758 * 15 14 5 17 17 C 1.50703 * 109.46999 * 174.66516 * 16 15 14 18 18 H 1.07995 * 119.99850 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00287 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99584 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00196 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47019 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46743 * 120.00313 * 21 19 17 24 24 H 1.48498 * 109.47210 * 240.00302 * 21 19 17 25 25 C 1.47443 * 108.57112 * 335.90831 * 14 5 4 26 26 H 1.09004 * 109.47376 * 298.25485 * 1 2 3 27 27 H 1.09001 * 109.47110 * 58.25405 * 1 2 3 28 28 H 1.08998 * 109.47401 * 178.25481 * 1 2 3 29 29 H 1.08999 * 110.98693 * 87.87602 * 4 2 1 30 30 H 1.08995 * 110.99031 * 324.05935 * 4 2 1 31 31 H 1.07998 * 119.97535 * 359.96913 * 8 7 5 32 32 H 1.08002 * 119.99033 * 180.02562 * 9 8 7 33 33 H 1.08003 * 120.01846 * 179.97438 * 10 9 8 34 34 H 1.08006 * 120.01358 * 0.02562 * 13 7 5 35 35 H 1.09006 * 109.46882 * 295.24600 * 15 14 5 36 36 H 1.09001 * 109.46949 * 55.24907 * 15 14 5 37 37 H 1.09002 * 109.47294 * 294.66568 * 16 15 14 38 38 H 1.09005 * 109.47666 * 54.67107 * 16 15 14 39 39 H 0.97006 * 119.99731 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.89418 * 120.39316 * 25 14 5 41 41 H 1.08999 * 109.88763 * 241.58326 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0785 -0.7947 -1.2143 5 6 3.4650 -1.2467 -0.6919 6 1 4.1930 -0.4431 -0.8036 7 6 3.9258 -2.4794 -1.4260 8 6 4.9083 -2.3806 -2.3939 9 6 5.3323 -3.5104 -3.0677 10 6 4.7749 -4.7407 -2.7742 11 6 3.7911 -4.8410 -1.8053 12 9 3.2459 -6.0431 -1.5173 13 6 3.3706 -3.7089 -1.1275 14 7 3.2489 -1.5502 0.7388 15 6 4.4405 -1.2216 1.5325 16 6 4.1395 -1.4364 3.0171 17 6 5.3973 -1.2263 3.8202 18 1 6.3190 -0.9652 3.3216 19 6 5.3712 -1.3664 5.1916 20 7 4.2486 -1.6838 5.7988 21 14 6.9304 -1.1066 6.1870 22 1 8.0489 -0.7606 5.2735 23 1 6.7213 0.0005 7.1544 24 1 7.2603 -2.3527 6.9243 25 6 2.0756 -0.7905 1.2079 26 1 -0.3634 0.4865 0.9052 27 1 -0.3633 0.5407 -0.8739 28 1 -0.3634 -1.0271 -0.0313 29 1 2.1812 -0.1510 -2.0879 30 1 1.4459 -1.6540 -1.4366 31 1 5.3446 -1.4198 -2.6237 32 1 6.1000 -3.4322 -3.8233 33 1 5.1060 -5.6235 -3.3011 34 1 2.6061 -3.7866 -0.3685 35 1 5.2663 -1.8666 1.2321 36 1 4.7133 -0.1798 1.3641 37 1 3.3791 -0.7255 3.3403 38 1 3.7759 -2.4524 3.1709 39 1 4.2302 -1.7827 6.7637 40 1 1.3132 -1.4762 1.5773 41 1 2.3720 -0.1013 1.9987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075842794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = -47.468896 kcal Electronic energy + Delta-G solvation = -21468.463850 eV Core-core repulsion = 18261.159892 eV Total energy + Delta-G solvation = -3207.303958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84591 -40.96639 -39.16152 -35.85350 -34.25030 -33.31833 -31.42198 -30.82508 -29.14154 -27.29589 -25.87304 -24.24413 -23.49294 -22.34086 -21.36018 -20.57372 -18.64922 -18.30161 -17.37764 -17.00935 -16.74875 -16.54800 -16.52543 -16.12482 -15.16152 -14.84727 -14.82434 -14.51826 -14.39577 -14.08117 -13.79138 -13.65433 -13.31516 -13.11855 -13.05686 -12.87143 -12.66321 -12.56400 -12.35358 -12.15030 -11.83748 -11.68214 -11.63478 -11.46751 -11.33669 -11.21739 -10.57804 -9.79456 -9.56109 -9.20152 -8.22294 -6.33586 0.24495 0.35987 1.38098 1.38960 1.52076 2.38412 2.65450 3.10274 3.11677 3.31681 3.61428 3.77898 3.88983 3.97050 4.03380 4.22731 4.31098 4.37337 4.46101 4.50434 4.57201 4.60569 4.64543 4.78569 4.87466 4.93578 5.01050 5.06471 5.07190 5.16600 5.18532 5.27006 5.29687 5.41018 5.43622 5.46709 5.60150 5.65356 5.78734 6.01815 6.08409 6.24724 6.32559 6.83183 7.35603 8.90080 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.005070 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.818054 B = 5521.706595 C = 6649.220854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.102 4.102 5 C 0.103 3.897 6 H 0.071 0.929 7 C -0.046 4.046 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.159 4.159 11 C 0.067 3.933 12 F -0.155 7.155 13 C -0.137 4.137 14 N -0.536 5.536 15 C 0.081 3.919 16 C 0.035 3.965 17 C -0.543 4.543 18 H 0.059 0.941 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.279 1.279 25 C 0.045 3.955 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.053 0.947 36 H 0.024 0.976 37 H -0.002 1.002 38 H -0.013 1.013 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 1.333 -20.579 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.099 0.901 4 C -0.140 4.140 5 C -0.005 4.005 6 H 0.089 0.911 7 C -0.047 4.047 8 C -0.145 4.145 9 C -0.104 4.104 10 C -0.178 4.178 11 C 0.048 3.952 12 F -0.134 7.134 13 C -0.156 4.156 14 N -0.260 5.260 15 C -0.047 4.047 16 C -0.003 4.003 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.205 1.205 25 C -0.083 4.083 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.016 0.984 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.527 0.726 -20.324 20.493 hybrid contribution 0.529 0.331 1.412 1.543 sum -1.998 1.057 -18.912 19.047 Atomic orbital electron populations 1.21679 0.92905 1.02132 1.02446 1.22389 0.97498 0.98951 0.93792 0.90088 1.22793 0.93353 1.00037 0.97768 1.21581 0.98389 0.93305 0.87234 0.91122 1.19661 0.95683 0.93564 0.95753 1.21408 0.96458 1.00572 0.96103 1.21315 0.99189 0.90502 0.99425 1.21406 0.97045 1.00865 0.98473 1.18056 0.97529 0.80263 0.99354 1.91446 1.85076 1.43871 1.93029 1.20962 1.02597 0.91894 1.00169 1.63427 1.04359 1.56109 1.02085 1.22040 0.91570 0.97037 0.94009 1.18991 0.95592 0.94860 0.90810 1.21634 0.96457 1.47420 0.92636 0.92270 1.25961 0.99708 0.94689 0.99259 1.70119 1.28188 1.49127 1.09762 0.85388 0.79257 0.77896 0.78448 1.18501 1.20136 1.20462 1.22886 0.92554 0.95447 0.97392 0.92721 0.90591 0.92731 0.88162 0.90739 0.83243 0.81598 0.83010 0.86291 0.92799 0.95743 0.98359 0.99431 0.92763 0.92062 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.13 71.98 0.66 -2.08 16 2 C -0.11 -2.62 3.54 -9.61 -0.03 -2.66 16 3 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 4 C -0.10 -2.26 5.92 31.98 0.19 -2.08 16 5 C 0.10 2.86 2.62 44.64 0.12 2.97 16 6 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 7 C -0.05 -1.24 5.03 -19.87 -0.10 -1.34 16 8 C -0.13 -2.67 9.68 22.27 0.22 -2.45 16 9 C -0.09 -1.58 10.04 22.26 0.22 -1.36 16 10 C -0.16 -3.48 10.03 22.31 0.22 -3.26 16 11 C 0.07 1.91 7.30 22.38 0.16 2.08 16 12 F -0.16 -4.81 17.27 44.97 0.78 -4.04 16 13 C -0.14 -4.20 9.16 22.31 0.20 -3.99 16 14 N -0.54 -19.61 4.22 -864.99 -3.65 -23.25 16 15 C 0.08 3.53 4.79 86.30 0.41 3.94 16 16 C 0.03 1.90 4.62 29.85 0.14 2.04 16 17 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 19 C 0.00 0.10 5.46 84.66 0.46 0.56 16 20 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 21 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C 0.04 1.55 5.79 86.65 0.50 2.05 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.71 7.81 -2.39 -0.02 1.69 16 31 H 0.15 2.36 8.04 -2.91 -0.02 2.34 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.12 4.10 7.74 -2.91 -0.02 4.07 16 35 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.02 1.03 7.97 -2.39 -0.02 1.01 16 37 H 0.00 -0.11 6.37 -2.39 -0.02 -0.12 16 38 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 39 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 40 H 0.06 2.22 7.82 -2.39 -0.02 2.20 16 41 H 0.04 1.60 5.96 -2.39 -0.01 1.59 16 Total: -1.00 -68.18 336.30 4.04 -64.13 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.00 Total: 10.76 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.61 Total: -36.99 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.36 Total: -80.85 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.04 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.18 4.04 -64.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075842794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.666 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds