Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.64685 * 2 1 4 4 C 1.55025 * 110.62695 * 236.60259 * 2 1 3 5 5 C 1.53995 * 104.93342 * 219.57592 * 4 2 1 6 6 H 1.08994 * 109.91777 * 118.38638 * 5 4 2 7 7 C 1.50702 * 109.91529 * 239.48443 * 5 4 2 8 8 C 1.38271 * 119.98267 * 258.18925 * 7 5 4 9 9 C 1.38229 * 120.05108 * 179.72445 * 8 7 5 10 10 C 1.38224 * 120.01985 * 0.30685 * 9 8 7 11 11 C 1.38434 * 119.97764 * 359.96998 * 10 9 8 12 12 F 1.35105 * 120.02401 * 180.02562 * 11 10 9 13 13 C 1.38171 * 119.99195 * 78.47368 * 7 5 4 14 14 N 1.47907 * 107.22512 * 358.93165 * 5 4 2 15 15 C 1.46902 * 110.99536 * 145.74422 * 14 5 4 16 16 C 1.53004 * 109.46640 * 190.00282 * 15 14 5 17 17 C 1.50699 * 109.47181 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99472 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00315 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46801 * 120.00369 * 21 19 17 24 24 H 1.48500 * 109.46925 * 240.00085 * 21 19 17 25 25 C 1.48535 * 105.81772 * 25.23082 * 14 5 4 26 26 H 1.09004 * 109.46890 * 298.29938 * 1 2 3 27 27 H 1.08998 * 109.47029 * 58.29601 * 1 2 3 28 28 H 1.09001 * 109.47632 * 178.30139 * 1 2 3 29 29 H 1.09007 * 110.36174 * 100.75327 * 4 2 1 30 30 H 1.08990 * 110.46280 * 338.44983 * 4 2 1 31 31 H 1.08002 * 119.97858 * 0.02562 * 8 7 5 32 32 H 1.07994 * 119.98968 * 180.27807 * 9 8 7 33 33 H 1.08003 * 120.00482 * 179.97438 * 10 9 8 34 34 H 1.07996 * 120.01425 * 359.97438 * 13 7 5 35 35 H 1.08993 * 109.47266 * 310.00212 * 15 14 5 36 36 H 1.09000 * 109.46790 * 70.00320 * 15 14 5 37 37 H 1.09003 * 109.47241 * 300.00007 * 16 15 14 38 38 H 1.09002 * 109.47352 * 59.99708 * 16 15 14 39 39 H 0.96996 * 119.99836 * 179.97438 * 20 19 17 40 40 H 1.09000 * 110.66183 * 79.22740 * 25 14 5 41 41 H 1.08996 * 110.66273 * 202.35454 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0761 -0.7986 -1.2113 5 6 3.2892 -1.5721 -0.6623 6 1 3.1195 -2.6446 -0.7566 7 6 4.5326 -1.1809 -1.4186 8 6 5.0359 -2.0153 -2.3996 9 6 6.1731 -1.6551 -3.0982 10 6 6.8118 -0.4632 -2.8122 11 6 6.3121 0.3703 -1.8263 12 9 6.9354 1.5358 -1.5464 13 6 5.1725 0.0086 -1.1275 14 7 3.4318 -1.2080 0.7642 15 6 3.9211 -2.3474 1.5519 16 6 3.8198 -2.0178 3.0425 17 6 4.3224 -3.1863 3.8507 18 1 4.6780 -4.0752 3.3510 19 6 4.3282 -3.1205 5.2278 20 7 3.8946 -2.0381 5.8363 21 14 4.9505 -4.5692 6.2295 22 1 5.3785 -5.6569 5.3135 23 1 6.1045 -4.1383 7.0588 24 1 3.8637 -5.0638 7.1124 25 6 2.0783 -0.7925 1.2132 26 1 -0.3633 0.4872 0.9049 27 1 -0.3633 0.5401 -0.8743 28 1 -0.3634 -1.0272 -0.0305 29 1 2.3882 -0.1188 -2.0042 30 1 1.3215 -1.4922 -1.5819 31 1 4.5375 -2.9468 -2.6236 32 1 6.5627 -2.3055 -3.8672 33 1 7.7005 -0.1822 -3.3579 34 1 4.7816 0.6582 -0.3584 35 1 3.3165 -3.2272 1.3324 36 1 4.9611 -2.5475 1.2938 37 1 4.4245 -1.1378 3.2620 38 1 2.7799 -1.8175 3.3006 39 1 3.8983 -1.9920 6.8051 40 1 1.4560 -1.6641 1.4164 41 1 2.1445 -0.1523 2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075842796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -32.275073 kcal Electronic energy + Delta-G solvation = -21469.738468 eV Core-core repulsion = 18263.093364 eV Total energy + Delta-G solvation = -3206.645104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.73577 -39.82708 -37.99569 -34.08720 -32.72170 -31.93846 -30.43395 -29.23007 -27.86681 -25.98844 -24.15152 -23.01549 -22.35042 -20.84273 -19.84875 -19.63025 -17.34686 -16.42587 -16.11643 -15.96272 -15.51842 -15.35560 -14.78317 -14.40695 -14.21753 -13.80492 -13.55778 -13.18197 -12.95454 -12.86176 -12.43361 -12.25290 -12.06634 -11.90662 -11.69884 -11.43670 -11.33354 -10.99356 -10.85182 -10.60862 -10.52182 -10.49278 -10.29610 -9.93271 -9.39705 -9.12452 -8.77805 -8.56257 -8.36224 -7.90277 -6.00819 -4.03069 1.24121 1.34537 3.30577 3.38114 3.42031 3.66258 4.32911 4.34004 4.49315 4.68924 4.85337 4.92265 4.97125 5.08315 5.16932 5.28809 5.35572 5.43940 5.52773 5.62682 5.67594 5.78137 5.92762 5.93884 5.99077 6.08095 6.12795 6.17015 6.24905 6.25720 6.32829 6.43330 6.47601 6.55376 6.65502 6.91277 7.01359 7.42724 7.46436 7.71686 7.85899 8.04360 8.41953 9.03900 9.60823 11.10633 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.004937 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.356766 B = 5670.584376 C = 6724.926257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.097 3.903 6 H 0.061 0.939 7 C -0.032 4.032 8 C -0.131 4.131 9 C -0.096 4.096 10 C -0.163 4.163 11 C 0.091 3.909 12 F -0.144 7.144 13 C -0.117 4.117 14 N -0.511 5.511 15 C 0.056 3.944 16 C 0.025 3.975 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.047 3.953 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.144 0.856 35 H 0.022 0.978 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 3.346 -18.255 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.011 4.011 6 H 0.079 0.921 7 C -0.033 4.033 8 C -0.149 4.149 9 C -0.114 4.114 10 C -0.182 4.182 11 C 0.072 3.928 12 F -0.122 7.122 13 C -0.136 4.136 14 N -0.235 5.235 15 C -0.071 4.071 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.081 4.081 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.778 3.867 -17.983 18.480 hybrid contribution 0.060 -1.332 0.680 1.497 sum -1.719 2.535 -17.303 17.572 Atomic orbital electron populations 1.21760 0.94851 1.01718 1.01593 1.22207 0.95135 0.99748 0.94740 0.90148 1.22591 0.95954 0.98742 0.98048 1.21336 0.91402 0.98143 0.90264 0.92119 1.19668 0.95823 0.93140 0.94657 1.21090 0.96947 0.99892 0.97002 1.20872 0.95333 0.95709 0.99528 1.21065 1.01993 0.95797 0.99378 1.17785 0.93859 0.83312 0.97885 1.91484 1.81808 1.45937 1.92994 1.21055 0.94386 0.98384 0.99765 1.64734 1.23071 1.35764 0.99915 1.22498 0.98698 0.89071 0.96821 1.19151 0.97510 0.97316 0.87269 1.21210 1.42281 1.01174 0.91292 0.92773 1.24982 0.95418 0.95889 0.97966 1.69976 1.47061 1.27264 1.08940 0.86551 0.78560 0.82769 0.80215 1.19777 1.20961 1.21027 1.23222 0.88963 0.98520 0.97373 0.92338 0.92876 0.92737 0.91193 0.91284 0.85782 0.85427 0.85324 0.83861 0.95977 0.91980 0.95770 0.96332 0.93049 0.93563 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.16 37.16 0.34 -1.19 16 2 C -0.10 -1.27 3.67 -88.53 -0.33 -1.59 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -1.39 6.15 -25.14 -0.15 -1.55 16 5 C 0.10 1.41 2.66 -67.79 -0.18 1.23 16 6 H 0.06 0.88 7.44 -51.93 -0.39 0.49 16 7 C -0.03 -0.45 4.74 -104.63 -0.50 -0.94 16 8 C -0.13 -1.57 9.67 -39.57 -0.38 -1.95 16 9 C -0.10 -1.05 10.04 -39.59 -0.40 -1.45 16 10 C -0.16 -1.96 10.03 -39.51 -0.40 -2.35 16 11 C 0.09 1.29 7.30 -39.42 -0.29 1.00 16 12 F -0.14 -2.14 17.27 2.25 0.04 -2.11 16 13 C -0.12 -1.74 9.31 -39.52 -0.37 -2.11 16 14 N -0.51 -9.02 4.27 -223.94 -0.96 -9.98 16 15 C 0.06 1.18 4.96 -3.82 -0.02 1.17 16 16 C 0.02 0.64 4.63 -27.88 -0.13 0.51 16 17 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.05 0.77 4.54 -1.90 -0.01 0.76 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 29 H 0.07 0.80 7.68 -51.92 -0.40 0.40 16 30 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 31 H 0.12 1.26 8.04 -52.49 -0.42 0.83 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.14 2.26 7.71 -52.49 -0.40 1.86 16 35 H 0.02 0.46 7.81 -51.93 -0.41 0.05 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.50 6.79 -51.93 -0.35 0.14 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.05 0.79 7.91 -51.93 -0.41 0.38 16 41 H 0.09 1.58 7.66 -51.93 -0.40 1.18 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -30.09 337.00 -9.85 -39.93 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.51 Total: -1.55 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.22 Total: -21.97 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.22 Total: -36.10 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.09 -9.85 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075842796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.657 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds