Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.64685 * 2 1 4 4 C 1.55025 * 110.62695 * 236.60259 * 2 1 3 5 5 C 1.53995 * 104.93342 * 219.57592 * 4 2 1 6 6 H 1.08994 * 109.91777 * 118.38638 * 5 4 2 7 7 C 1.50702 * 109.91529 * 239.48443 * 5 4 2 8 8 C 1.38271 * 119.98267 * 258.18925 * 7 5 4 9 9 C 1.38229 * 120.05108 * 179.72445 * 8 7 5 10 10 C 1.38224 * 120.01985 * 0.30685 * 9 8 7 11 11 C 1.38434 * 119.97764 * 359.96998 * 10 9 8 12 12 F 1.35105 * 120.02401 * 180.02562 * 11 10 9 13 13 C 1.38171 * 119.99195 * 78.47368 * 7 5 4 14 14 N 1.47907 * 107.22512 * 358.93165 * 5 4 2 15 15 C 1.46902 * 110.99536 * 145.74422 * 14 5 4 16 16 C 1.53004 * 109.46640 * 190.00282 * 15 14 5 17 17 C 1.50699 * 109.47181 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99472 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00315 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99766 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46801 * 120.00369 * 21 19 17 24 24 H 1.48500 * 109.46925 * 240.00085 * 21 19 17 25 25 C 1.48535 * 105.81772 * 25.23082 * 14 5 4 26 26 H 1.09004 * 109.46890 * 298.29938 * 1 2 3 27 27 H 1.08998 * 109.47029 * 58.29601 * 1 2 3 28 28 H 1.09001 * 109.47632 * 178.30139 * 1 2 3 29 29 H 1.09007 * 110.36174 * 100.75327 * 4 2 1 30 30 H 1.08990 * 110.46280 * 338.44983 * 4 2 1 31 31 H 1.08002 * 119.97858 * 0.02562 * 8 7 5 32 32 H 1.07994 * 119.98968 * 180.27807 * 9 8 7 33 33 H 1.08003 * 120.00482 * 179.97438 * 10 9 8 34 34 H 1.07996 * 120.01425 * 359.97438 * 13 7 5 35 35 H 1.08993 * 109.47266 * 310.00212 * 15 14 5 36 36 H 1.09000 * 109.46790 * 70.00320 * 15 14 5 37 37 H 1.09003 * 109.47241 * 300.00007 * 16 15 14 38 38 H 1.09002 * 109.47352 * 59.99708 * 16 15 14 39 39 H 0.96996 * 119.99836 * 179.97438 * 20 19 17 40 40 H 1.09000 * 110.66183 * 79.22740 * 25 14 5 41 41 H 1.08996 * 110.66273 * 202.35454 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0761 -0.7986 -1.2113 5 6 3.2892 -1.5721 -0.6623 6 1 3.1195 -2.6446 -0.7566 7 6 4.5326 -1.1809 -1.4186 8 6 5.0359 -2.0153 -2.3996 9 6 6.1731 -1.6551 -3.0982 10 6 6.8118 -0.4632 -2.8122 11 6 6.3121 0.3703 -1.8263 12 9 6.9354 1.5358 -1.5464 13 6 5.1725 0.0086 -1.1275 14 7 3.4318 -1.2080 0.7642 15 6 3.9211 -2.3474 1.5519 16 6 3.8198 -2.0178 3.0425 17 6 4.3224 -3.1863 3.8507 18 1 4.6780 -4.0752 3.3510 19 6 4.3282 -3.1205 5.2278 20 7 3.8946 -2.0381 5.8363 21 14 4.9505 -4.5692 6.2295 22 1 5.3785 -5.6569 5.3135 23 1 6.1045 -4.1383 7.0588 24 1 3.8637 -5.0638 7.1124 25 6 2.0783 -0.7925 1.2132 26 1 -0.3633 0.4872 0.9049 27 1 -0.3633 0.5401 -0.8743 28 1 -0.3634 -1.0272 -0.0305 29 1 2.3882 -0.1188 -2.0042 30 1 1.3215 -1.4922 -1.5819 31 1 4.5375 -2.9468 -2.6236 32 1 6.5627 -2.3055 -3.8672 33 1 7.7005 -0.1822 -3.3579 34 1 4.7816 0.6582 -0.3584 35 1 3.3165 -3.2272 1.3324 36 1 4.9611 -2.5475 1.2938 37 1 4.4245 -1.1378 3.2620 38 1 2.7799 -1.8175 3.3006 39 1 3.8983 -1.9920 6.8051 40 1 1.4560 -1.6641 1.4164 41 1 2.1445 -0.1523 2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075842796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = -48.125824 kcal Electronic energy + Delta-G solvation = -21470.425809 eV Core-core repulsion = 18263.093364 eV Total energy + Delta-G solvation = -3207.332444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.84566 -40.98255 -39.10820 -35.87142 -34.27811 -33.29173 -31.42838 -30.83340 -29.11377 -27.36123 -25.85080 -24.22122 -23.45590 -22.28719 -21.13957 -20.94280 -18.68263 -18.23373 -17.23049 -17.00656 -16.70358 -16.53957 -16.42526 -16.06436 -15.72146 -14.87412 -14.75675 -14.46241 -14.18589 -13.97119 -13.83085 -13.77911 -13.41867 -13.13141 -12.96351 -12.88637 -12.66203 -12.56782 -12.37892 -12.20690 -11.82435 -11.64956 -11.58773 -11.42450 -11.31230 -11.23453 -10.58317 -9.79737 -9.57058 -9.34440 -8.22421 -6.33903 0.24329 0.35829 1.38146 1.39007 1.52093 2.38360 2.66249 3.09081 3.11192 3.31451 3.63246 3.74119 3.89567 3.98409 4.05280 4.19683 4.34429 4.35730 4.43779 4.51002 4.57311 4.60244 4.68371 4.81170 4.84821 4.90187 4.99716 5.02816 5.05558 5.17293 5.19929 5.29043 5.31033 5.40614 5.43456 5.45773 5.57878 5.63903 5.77896 5.98632 6.04002 6.17985 6.30218 6.82875 7.35438 8.89909 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.004937 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.356766 B = 5670.584376 C = 6724.926257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.105 4.105 5 C 0.097 3.903 6 H 0.066 0.934 7 C -0.046 4.046 8 C -0.129 4.129 9 C -0.086 4.086 10 C -0.159 4.159 11 C 0.068 3.932 12 F -0.155 7.155 13 C -0.137 4.137 14 N -0.524 5.524 15 C 0.076 3.924 16 C 0.035 3.965 17 C -0.544 4.544 18 H 0.059 0.941 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.276 1.276 25 C 0.045 3.955 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.026 0.974 36 H 0.054 0.946 37 H -0.013 1.013 38 H -0.001 1.001 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 1.506 -20.576 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.012 4.012 6 H 0.084 0.916 7 C -0.047 4.047 8 C -0.147 4.147 9 C -0.104 4.104 10 C -0.178 4.178 11 C 0.049 3.951 12 F -0.134 7.134 13 C -0.156 4.156 14 N -0.247 5.247 15 C -0.051 4.051 16 C -0.002 4.002 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.201 1.201 25 C -0.083 4.083 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.138 0.862 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.005 0.995 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.680 2.032 -20.324 20.495 hybrid contribution 0.048 -0.719 1.381 1.557 sum -1.632 1.313 -18.944 19.059 Atomic orbital electron populations 1.21732 0.92872 1.02312 1.02498 1.22148 0.96653 0.99002 0.93143 0.90484 1.22577 0.95280 0.98901 0.97562 1.21428 0.93032 0.98814 0.87878 0.91566 1.19698 0.95942 0.93324 0.95714 1.21409 0.97151 1.00149 0.95981 1.21311 0.94292 0.95359 0.99441 1.21402 1.02513 0.95580 0.98316 1.18049 0.94204 0.83702 0.99174 1.91448 1.81983 1.46696 1.93260 1.20957 0.95481 0.99005 1.00133 1.64631 1.23933 1.34335 1.01804 1.22077 0.98539 0.90370 0.94162 1.18950 0.95290 0.95296 0.90683 1.21630 1.42527 1.01894 0.92167 0.92294 1.25952 0.95394 0.98924 0.99286 1.70113 1.48048 1.29532 1.09460 0.85390 0.78065 0.79095 0.78445 1.18537 1.20451 1.20133 1.23176 0.88624 0.98222 0.98237 0.92756 0.90586 0.92364 0.90052 0.89111 0.83382 0.81638 0.82999 0.86173 0.95551 0.92784 0.99500 0.98245 0.92746 0.94386 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.16 71.98 0.66 -2.09 16 2 C -0.09 -2.28 3.67 -9.44 -0.03 -2.31 16 3 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.11 -2.35 6.15 31.62 0.19 -2.15 16 5 C 0.10 2.71 2.66 44.31 0.12 2.83 16 6 H 0.07 1.79 7.44 -2.39 -0.02 1.78 16 7 C -0.05 -1.24 4.74 -19.87 -0.09 -1.33 16 8 C -0.13 -2.70 9.67 22.28 0.22 -2.49 16 9 C -0.09 -1.57 10.04 22.26 0.22 -1.34 16 10 C -0.16 -3.44 10.03 22.31 0.22 -3.22 16 11 C 0.07 1.91 7.30 22.37 0.16 2.07 16 12 F -0.16 -4.73 17.27 44.97 0.78 -3.96 16 13 C -0.14 -4.13 9.31 22.31 0.21 -3.93 16 14 N -0.52 -19.14 4.27 -862.41 -3.68 -22.82 16 15 C 0.08 3.33 4.96 86.30 0.43 3.75 16 16 C 0.04 1.92 4.63 29.85 0.14 2.06 16 17 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 C 0.05 1.56 4.54 86.65 0.39 1.95 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 29 H 0.08 1.67 7.68 -2.38 -0.02 1.65 16 30 H 0.09 1.66 7.83 -2.39 -0.02 1.64 16 31 H 0.15 2.39 8.04 -2.91 -0.02 2.36 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.12 4.08 7.71 -2.91 -0.02 4.06 16 35 H 0.03 1.11 7.81 -2.39 -0.02 1.09 16 36 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.00 -0.04 6.79 -2.39 -0.02 -0.06 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.04 1.35 7.91 -2.39 -0.02 1.33 16 41 H 0.06 2.25 7.66 -2.39 -0.02 2.23 16 Total: -1.00 -67.62 337.00 3.93 -63.69 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.53 Total: -36.99 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -3.40 Total: -80.18 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -67.62 3.93 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075842796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.567 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds