Wall clock time and date at job start Mon Mar 30 2020 02:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.62489 * 2 1 4 4 C 1.55433 * 110.84216 * 236.81698 * 2 1 3 5 5 C 1.54905 * 101.51603 * 205.90326 * 4 2 1 6 6 H 1.09000 * 110.37710 * 278.17796 * 5 4 2 7 7 C 1.50707 * 110.37185 * 155.95050 * 5 4 2 8 8 C 1.38217 * 120.00989 * 267.68405 * 7 5 4 9 9 C 1.38229 * 120.01997 * 179.72449 * 8 7 5 10 10 C 1.38268 * 120.05209 * 0.54480 * 9 8 7 11 11 C 1.38170 * 120.02550 * 359.73052 * 10 9 8 12 12 C 1.38434 * 120.01140 * 87.95734 * 7 5 4 13 13 F 1.35101 * 120.02621 * 0.02562 * 12 7 5 14 14 N 1.47847 * 104.89673 * 37.06584 * 5 4 2 15 15 C 1.46898 * 111.00186 * 213.57554 * 14 5 4 16 16 C 1.53001 * 109.46977 * 175.25001 * 15 14 5 17 17 C 1.50707 * 109.46836 * 174.66649 * 16 15 14 18 18 H 1.07997 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99546 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99697 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00440 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47193 * 89.99691 * 21 19 17 23 23 H 1.48506 * 109.46983 * 209.99938 * 21 19 17 24 24 H 1.48508 * 109.46868 * 329.99619 * 21 19 17 25 25 C 1.47443 * 108.56491 * 335.84873 * 14 5 4 26 26 H 1.08997 * 109.47702 * 298.35094 * 1 2 3 27 27 H 1.09003 * 109.46780 * 58.34908 * 1 2 3 28 28 H 1.08996 * 109.46963 * 178.34368 * 1 2 3 29 29 H 1.09002 * 111.10528 * 87.83783 * 4 2 1 30 30 H 1.08997 * 110.99692 * 323.92482 * 4 2 1 31 31 H 1.07998 * 119.99081 * 359.97438 * 8 7 5 32 32 H 1.08001 * 119.97183 * 180.27715 * 9 8 7 33 33 H 1.07994 * 119.98628 * 179.75022 * 10 9 8 34 34 H 1.07996 * 120.01464 * 180.02562 * 11 10 9 35 35 H 1.08996 * 109.47351 * 295.25910 * 15 14 5 36 36 H 1.09007 * 109.46814 * 55.25505 * 15 14 5 37 37 H 1.09000 * 109.47364 * 294.66558 * 16 15 14 38 38 H 1.08997 * 109.47010 * 54.66808 * 16 15 14 39 39 H 0.97001 * 120.00278 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.88999 * 120.39571 * 25 14 5 41 41 H 1.08997 * 109.88731 * 241.42085 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0831 -0.7950 -1.2157 5 6 3.4691 -1.2423 -0.6881 6 1 4.1954 -0.4371 -0.7991 7 6 3.9367 -2.4738 -1.4203 8 6 3.6578 -3.7282 -0.9114 9 6 4.0817 -4.8580 -1.5857 10 6 4.7948 -4.7345 -2.7638 11 6 5.0796 -3.4814 -3.2715 12 6 4.6506 -2.3489 -2.5997 13 9 4.9290 -1.1231 -3.0949 14 7 3.2515 -1.5456 0.7424 15 6 4.4411 -1.2137 1.5379 16 6 4.1383 -1.4286 3.0221 17 6 5.3944 -1.2150 3.8270 18 1 6.3162 -0.9519 3.3297 19 6 5.3665 -1.3555 5.1983 20 7 6.4625 -1.1687 5.9008 21 14 3.7722 -1.8113 6.0585 22 1 3.6662 -3.2894 6.1537 23 1 3.7609 -1.2252 7.4229 24 1 2.6222 -1.2814 5.2825 25 6 2.0756 -0.7884 1.2092 26 1 -0.3634 0.4880 0.9043 27 1 -0.3633 0.5393 -0.8748 28 1 -0.3633 -1.0272 -0.0297 29 1 2.1868 -0.1528 -2.0903 30 1 1.4534 -1.6565 -1.4382 31 1 3.1051 -3.8258 0.0113 32 1 3.8595 -5.8379 -1.1896 33 1 5.1289 -5.6178 -3.2877 34 1 5.6362 -3.3851 -4.1919 35 1 5.2689 -1.8567 1.2390 36 1 4.7116 -0.1713 1.3694 37 1 3.3757 -0.7194 3.3438 38 1 3.7768 -2.4454 3.1757 39 1 6.4431 -1.2679 6.8655 40 1 1.3142 -1.4758 1.5777 41 1 2.3685 -0.1002 2.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075900216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:55 Heat of formation + Delta-G solvation = -25.895686 kcal Electronic energy + Delta-G solvation = -21744.392227 eV Core-core repulsion = 18538.023754 eV Total energy + Delta-G solvation = -3206.368473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.81042 -39.75237 -38.16938 -34.15238 -32.79067 -32.01564 -30.43256 -29.56977 -28.04656 -26.09262 -24.14283 -23.08276 -22.27131 -20.82848 -20.21748 -19.14482 -17.54246 -17.03631 -16.38243 -15.83286 -15.56379 -15.49047 -14.66940 -14.21180 -14.02411 -13.85657 -13.60073 -13.35733 -13.14181 -12.76542 -12.59370 -12.53164 -12.33833 -12.04341 -11.63343 -11.60788 -11.36240 -11.12387 -10.88736 -10.75499 -10.58642 -10.42372 -10.16117 -9.78840 -9.75236 -9.19198 -8.81854 -8.54575 -8.53542 -7.91151 -6.04550 -4.02738 1.22331 1.32927 3.31305 3.38308 3.41866 3.66836 4.17593 4.38906 4.45118 4.57343 4.81255 4.86384 4.96254 4.99856 5.10802 5.29595 5.34173 5.37832 5.49756 5.52586 5.58211 5.69383 5.81670 5.95031 5.98041 6.00178 6.10392 6.12611 6.16666 6.18923 6.26597 6.30169 6.44387 6.52987 6.58456 6.74509 6.99019 7.12487 7.29179 7.48923 7.60491 7.83315 8.52962 8.99840 9.57585 11.08919 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.005370 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.958636 B = 5212.483197 C = 6118.190224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 H 0.074 0.926 4 C -0.111 4.111 5 C 0.108 3.892 6 H 0.065 0.935 7 C -0.097 4.097 8 C -0.058 4.058 9 C -0.136 4.136 10 C -0.099 4.099 11 C -0.161 4.161 12 C 0.095 3.905 13 F -0.142 7.142 14 N -0.525 5.525 15 C 0.066 3.934 16 C -0.009 4.009 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.068 3.932 20 N -0.903 5.903 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.266 1.266 25 C 0.044 3.956 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 -3.388 -17.792 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.001 4.001 6 H 0.083 0.917 7 C -0.099 4.099 8 C -0.076 4.076 9 C -0.154 4.154 10 C -0.117 4.117 11 C -0.180 4.180 12 C 0.075 3.925 13 F -0.121 7.121 14 N -0.249 5.249 15 C -0.060 4.060 16 C -0.047 4.047 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.084 4.084 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.926 -3.862 -17.539 20.519 hybrid contribution -0.276 0.828 0.418 0.968 sum -10.201 -3.033 -17.121 20.159 Atomic orbital electron populations 1.21703 0.94440 1.01894 1.01485 1.22469 0.96223 0.99375 0.95436 0.90768 1.22816 0.94929 0.99779 0.97363 1.21290 0.96766 0.92814 0.89198 0.91716 1.19831 0.99365 0.96675 0.94007 1.21121 0.97062 0.90148 0.99277 1.21287 0.99389 0.99117 0.95625 1.20955 0.98090 0.96453 0.96249 1.21015 1.03702 0.91741 1.01544 1.17596 1.00335 0.79976 0.94563 1.91463 1.92045 1.41404 1.87193 1.63494 1.05463 1.55347 1.00561 1.22295 0.90591 0.98009 0.95153 1.19650 0.97588 0.96830 0.90612 1.21068 0.95567 1.47593 0.91663 0.91138 1.24994 0.96159 0.94724 0.97451 1.69916 1.27444 1.50176 1.06707 0.86761 0.84627 0.79026 0.78752 1.20224 1.21488 1.19019 1.22942 0.93058 0.95970 0.96386 0.92499 0.92892 0.92410 0.91134 0.90538 0.83568 0.85578 0.85542 0.85242 0.91350 0.95566 0.96534 0.96089 0.92732 0.90753 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.14 37.16 0.34 -1.09 16 2 C -0.12 -1.45 3.54 -88.64 -0.31 -1.77 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -1.39 5.96 -24.43 -0.15 -1.54 16 5 C 0.11 1.62 2.41 -67.34 -0.16 1.46 16 6 H 0.06 1.06 7.37 -51.93 -0.38 0.67 16 7 C -0.10 -1.41 5.10 -104.55 -0.53 -1.94 16 8 C -0.06 -0.80 9.35 -39.59 -0.37 -1.17 16 9 C -0.14 -1.58 10.04 -39.57 -0.40 -1.98 16 10 C -0.10 -1.06 10.04 -39.60 -0.40 -1.46 16 11 C -0.16 -1.90 10.03 -39.51 -0.40 -2.29 16 12 C 0.09 1.32 7.25 -39.42 -0.29 1.03 16 13 F -0.14 -2.07 16.58 2.25 0.04 -2.03 16 14 N -0.53 -8.89 3.68 -224.75 -0.83 -9.72 16 15 C 0.07 1.36 4.79 -3.82 -0.02 1.35 16 16 C -0.01 -0.22 3.69 -27.88 -0.10 -0.32 16 17 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 21 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 25 C 0.04 0.68 5.79 -2.84 -0.02 0.67 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 31 H 0.15 2.10 7.26 -52.49 -0.38 1.72 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.03 0.55 7.97 -51.92 -0.41 0.13 16 37 H 0.02 0.39 5.43 -51.93 -0.28 0.11 16 38 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 41 H 0.07 1.16 5.96 -51.93 -0.31 0.86 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -30.55 331.35 -9.29 -39.84 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.37 Total: -0.56 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -3.23 Total: -22.41 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.05 Total: -36.98 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.55 -9.29 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075900216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.949 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds