Wall clock time and date at job start Mon Mar 30 2020 02:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.33614 * 2 1 4 4 C 1.54911 * 110.46403 * 237.68590 * 2 1 3 5 5 C 1.55141 * 101.65008 * 204.05199 * 4 2 1 6 6 H 1.08998 * 110.86016 * 277.20171 * 5 4 2 7 7 C 1.50708 * 110.70403 * 154.03552 * 5 4 2 8 8 C 1.38242 * 119.97061 * 124.94964 * 7 5 4 9 9 C 1.38205 * 120.02001 * 180.02562 * 8 7 5 10 10 C 1.38455 * 119.97502 * 0.02562 * 9 8 7 11 11 F 1.35106 * 120.02241 * 179.97438 * 10 9 8 12 12 C 1.38458 * 119.95220 * 359.97438 * 10 9 8 13 13 C 1.38198 * 119.97324 * 0.02562 * 12 10 9 14 14 C 1.54320 * 103.02150 * 35.65765 * 5 4 2 15 15 N 1.47451 * 107.23220 * 337.71148 * 14 5 4 16 16 C 1.46894 * 110.99944 * 236.74624 * 15 14 5 17 17 C 1.53003 * 109.47217 * 290.12402 * 16 15 14 18 18 C 1.50701 * 109.47148 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99802 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47226 * 59.99961 * 22 20 18 24 24 H 1.48502 * 109.47302 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47184 * 300.00175 * 22 20 18 26 26 H 1.09000 * 109.46841 * 297.74369 * 1 2 3 27 27 H 1.09000 * 109.47200 * 57.73715 * 1 2 3 28 28 H 1.08993 * 109.47450 * 177.74390 * 1 2 3 29 29 H 1.09000 * 110.98961 * 85.96343 * 4 2 1 30 30 H 1.08995 * 110.98963 * 322.14085 * 4 2 1 31 31 H 1.07994 * 119.98958 * 0.27574 * 8 7 5 32 32 H 1.08001 * 120.00504 * 180.02562 * 9 8 7 33 33 H 1.07996 * 120.01541 * 179.97438 * 12 10 9 34 34 H 1.07999 * 119.98646 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.89342 * 97.11642 * 14 5 4 36 36 H 1.08998 * 109.88643 * 218.14824 * 14 5 4 37 37 H 1.08994 * 109.47551 * 50.12653 * 16 15 14 38 38 H 1.09004 * 109.47108 * 170.12499 * 16 15 14 39 39 H 1.09004 * 109.46542 * 300.00535 * 17 16 15 40 40 H 1.08996 * 109.47102 * 60.00340 * 17 16 15 41 41 H 0.96995 * 120.00390 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0716 -0.7758 -1.2266 5 6 3.4811 -1.1968 -0.7336 6 1 4.1979 -0.3871 -0.8703 7 6 3.9445 -2.4419 -1.4451 8 6 5.1533 -2.4447 -2.1158 9 6 5.5791 -3.5858 -2.7690 10 6 4.7941 -4.7262 -2.7519 11 9 5.2091 -5.8421 -3.3906 12 6 3.5836 -4.7222 -2.0798 13 6 3.1599 -3.5800 -1.4273 14 6 3.2551 -1.4779 0.7668 15 7 2.0447 -0.7397 1.1721 16 6 2.3333 0.1736 2.2858 17 6 2.6046 -0.6383 3.5540 18 6 2.9001 0.2987 4.6967 19 1 2.8954 1.3664 4.5346 20 6 3.1765 -0.2072 5.9491 21 7 3.1828 -1.5075 6.1465 22 14 3.5435 0.9541 7.3654 23 1 2.3779 1.8468 7.5883 24 1 3.8066 0.1661 8.5963 25 1 4.7383 1.7728 7.0374 26 1 -0.3633 0.4784 0.9095 27 1 -0.3633 0.5486 -0.8690 28 1 -0.3634 -1.0268 -0.0405 29 1 2.1410 -0.1268 -2.0995 30 1 1.4554 -1.6493 -1.4393 31 1 5.7671 -1.5561 -2.1259 32 1 6.5237 -3.5878 -3.2925 33 1 2.9703 -5.6111 -2.0662 34 1 2.2155 -3.5766 -0.9034 35 1 3.1085 -2.5462 0.9260 36 1 4.1135 -1.1317 1.3423 37 1 3.2100 0.7748 2.0449 38 1 1.4775 0.8285 2.4498 39 1 1.7278 -1.2396 3.7949 40 1 3.4604 -1.2932 3.3901 41 1 3.3768 -1.8634 7.0277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076809401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:51 Heat of formation + Delta-G solvation = -49.739101 kcal Electronic energy + Delta-G solvation = -21041.365458 eV Core-core repulsion = 17833.963057 eV Total energy + Delta-G solvation = -3207.402401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87944 -40.99375 -39.27140 -35.72558 -34.09625 -33.01145 -32.08907 -30.73246 -29.33278 -26.74094 -25.98564 -24.34764 -23.71941 -22.26448 -21.22805 -20.65314 -18.66623 -18.55015 -17.61784 -16.77500 -16.65948 -16.57076 -16.50775 -15.81867 -15.14010 -14.97361 -14.76552 -14.47479 -14.39101 -14.06970 -13.84984 -13.61164 -13.52741 -13.27730 -12.89089 -12.82315 -12.78107 -12.41049 -12.33769 -12.07635 -11.99894 -11.71290 -11.63593 -11.49326 -11.33745 -11.15329 -10.54785 -10.04104 -9.48775 -9.12235 -8.19491 -6.31374 0.15050 0.29777 1.39841 1.43097 1.51057 2.40401 2.58994 3.11774 3.13726 3.30627 3.57921 3.72545 3.82771 3.95683 3.98453 4.20656 4.29746 4.37009 4.42347 4.47927 4.57419 4.60205 4.61451 4.86384 4.94441 4.97112 5.00729 5.04291 5.09549 5.10471 5.16214 5.17893 5.27293 5.32495 5.46192 5.48592 5.63596 5.67888 5.80547 5.94348 6.11950 6.30891 6.37155 6.86099 7.37950 8.92380 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.003740 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.486207 B = 7483.845656 C = 8353.101180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.059 3.941 3 H 0.052 0.948 4 C -0.102 4.102 5 C -0.062 4.062 6 H 0.094 0.906 7 C -0.080 4.080 8 C -0.089 4.089 9 C -0.152 4.152 10 C 0.072 3.928 11 F -0.150 7.150 12 C -0.155 4.155 13 C -0.089 4.089 14 C 0.056 3.944 15 N -0.539 5.539 16 C 0.078 3.922 17 C 0.039 3.961 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.266 1.266 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.021 0.979 38 H 0.060 0.940 39 H -0.011 1.011 40 H -0.011 1.011 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -0.740 -20.783 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.081 4.081 6 H 0.112 0.888 7 C -0.081 4.081 8 C -0.107 4.107 9 C -0.171 4.171 10 C 0.053 3.947 11 F -0.129 7.129 12 C -0.174 4.174 13 C -0.107 4.107 14 C -0.072 4.072 15 N -0.263 5.263 16 C -0.050 4.050 17 C 0.002 3.998 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.191 1.191 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.447 -1.253 -20.493 20.536 hybrid contribution 0.934 0.426 0.954 1.402 sum 1.381 -0.826 -19.539 19.605 Atomic orbital electron populations 1.21654 0.93324 1.02164 1.01513 1.22713 0.96752 0.96068 0.89289 0.92971 1.22842 0.93595 1.00667 0.96903 1.21354 0.98558 0.95203 0.93031 0.88785 1.19840 0.95122 0.95072 0.98061 1.21181 0.95375 0.98514 0.95619 1.21346 1.01287 0.91948 1.02521 1.17961 0.95572 0.83560 0.97616 1.91469 1.90386 1.51008 1.80022 1.21303 0.95973 1.00525 0.99577 1.21031 1.00358 0.91640 0.97659 1.22830 0.91251 0.99027 0.94135 1.63535 1.28858 1.26964 1.06937 1.22087 0.98024 0.93746 0.91110 1.18878 0.94515 0.94629 0.91800 1.21613 1.47898 0.93679 0.95278 0.92195 1.25962 0.95059 0.96725 1.01852 1.70109 1.50120 1.13334 1.23606 0.85501 0.79155 0.78604 0.77782 1.19082 1.20837 1.19118 0.94161 0.90160 0.92469 0.88482 0.89915 0.83046 0.82964 0.83616 0.84546 0.91846 0.94511 0.96072 0.92196 0.99233 0.99226 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.60 71.98 0.69 -2.40 16 2 C 0.06 1.57 3.00 45.39 0.14 1.71 16 3 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 4 C -0.10 -2.10 5.88 31.98 0.19 -1.91 16 5 C -0.06 -1.44 3.17 -10.36 -0.03 -1.47 16 6 H 0.09 1.98 7.94 -2.39 -0.02 1.96 16 7 C -0.08 -1.73 4.93 -19.86 -0.10 -1.83 16 8 C -0.09 -1.67 9.68 22.26 0.22 -1.45 16 9 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 10 C 0.07 1.57 7.30 22.37 0.16 1.73 16 11 F -0.15 -3.46 17.27 44.97 0.78 -2.69 16 12 C -0.16 -3.27 10.03 22.31 0.22 -3.04 16 13 C -0.09 -1.94 8.12 22.26 0.18 -1.76 16 14 C 0.06 1.82 5.70 86.65 0.49 2.31 16 15 N -0.54 -19.06 4.81 -860.63 -4.14 -23.20 16 16 C 0.08 3.33 4.48 86.31 0.39 3.72 16 17 C 0.04 2.14 5.00 29.85 0.15 2.29 16 18 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 22 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.65 6.76 -2.39 -0.02 1.64 16 31 H 0.15 2.16 7.98 -2.91 -0.02 2.14 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.14 2.94 7.29 -2.91 -0.02 2.91 16 35 H 0.06 2.19 7.01 -2.39 -0.02 2.18 16 36 H 0.04 1.37 6.92 -2.39 -0.02 1.35 16 37 H 0.02 0.89 7.96 -2.39 -0.02 0.87 16 38 H 0.06 2.52 8.07 -2.38 -0.02 2.50 16 39 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 40 H -0.01 -0.62 7.14 -2.39 -0.02 -0.64 16 41 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -66.43 335.45 3.56 -62.87 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.00 Total: 9.41 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.62 Total: -35.54 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -3.86 Total: -80.61 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.43 3.56 -62.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076809401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.136 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds