Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.90506 * 2 1 4 4 C 1.53995 * 110.08508 * 121.20251 * 2 1 3 5 5 C 1.54593 * 105.13858 * 120.67126 * 4 2 1 6 6 H 1.08998 * 110.72026 * 263.42001 * 5 4 2 7 7 C 1.50704 * 110.72265 * 140.32041 * 5 4 2 8 8 C 1.38249 * 119.97162 * 299.72118 * 7 5 4 9 9 C 1.38198 * 120.02028 * 179.77010 * 8 7 5 10 10 C 1.38454 * 119.97869 * 0.50697 * 9 8 7 11 11 F 1.35096 * 120.02984 * 179.77025 * 10 9 8 12 12 C 1.38462 * 119.94695 * 359.74750 * 10 9 8 13 13 C 1.38200 * 119.97568 * 359.97438 * 12 10 9 14 14 C 1.54932 * 102.92491 * 21.96002 * 5 4 2 15 15 N 1.47902 * 109.92047 * 238.89473 * 2 1 3 16 16 C 1.46896 * 111.00075 * 94.60122 * 15 2 1 17 17 C 1.53001 * 109.47230 * 170.00407 * 16 15 2 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.09000 * 109.47119 * 181.11008 * 1 2 3 27 27 H 1.09004 * 109.46929 * 301.10752 * 1 2 3 28 28 H 1.08996 * 109.47486 * 61.10531 * 1 2 3 29 29 H 1.09005 * 110.31376 * 239.59137 * 4 2 1 30 30 H 1.09010 * 110.30657 * 1.65546 * 4 2 1 31 31 H 1.07995 * 119.98617 * 0.02562 * 8 7 5 32 32 H 1.08002 * 120.00637 * 180.25615 * 9 8 7 33 33 H 1.08005 * 120.01306 * 180.02562 * 12 10 9 34 34 H 1.08000 * 119.98785 * 180.02562 * 13 12 10 35 35 H 1.08995 * 110.66794 * 204.15661 * 14 5 4 36 36 H 1.09000 * 110.66503 * 81.01537 * 14 5 4 37 37 H 1.08998 * 109.47372 * 50.00258 * 16 15 2 38 38 H 1.09006 * 109.47513 * 290.00430 * 16 15 2 39 39 H 1.08998 * 109.47065 * 59.99662 * 17 16 15 40 40 H 1.09001 * 109.46892 * 299.99926 * 17 16 15 41 41 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0588 -0.7493 1.2371 5 6 2.9124 -1.9081 0.6728 6 1 2.3313 -2.8293 0.6291 7 6 4.1577 -2.1043 1.4986 8 6 5.0731 -1.0757 1.6229 9 6 6.2131 -1.2529 2.3837 10 6 6.4435 -2.4644 3.0130 11 9 7.5598 -2.6403 3.7533 12 6 5.5285 -3.4956 2.8835 13 6 4.3864 -3.3143 2.1269 14 6 3.2709 -1.4132 -0.7509 15 7 2.0339 -0.7184 -1.1906 16 6 2.3167 0.2157 -2.2885 17 6 3.0630 -0.5191 -3.4038 18 6 3.3536 0.4394 -4.5298 19 1 3.0338 1.4684 -4.4592 20 6 4.0234 0.0012 -5.6526 21 7 4.2723 0.8362 -6.6376 22 14 4.5774 -1.7787 -5.7744 23 1 3.5035 -2.5894 -6.4026 24 1 5.8071 -1.8587 -6.6030 25 1 4.8620 -2.3028 -4.4144 26 1 -0.3633 -1.0275 0.0199 27 1 -0.3633 0.5310 0.8799 28 1 -0.3634 0.4965 -0.8997 29 1 2.6747 -0.0872 1.8458 30 1 1.2289 -1.1404 1.8259 31 1 4.8952 -0.1322 1.1286 32 1 6.9260 -0.4478 2.4840 33 1 5.7070 -4.4410 3.3743 34 1 3.6724 -4.1183 2.0260 35 1 3.4927 -2.2553 -1.4064 36 1 4.1105 -0.7190 -0.7167 37 1 2.9321 1.0357 -1.9185 38 1 1.3793 0.6125 -2.6786 39 1 2.4475 -1.3391 -3.7738 40 1 4.0003 -0.9157 -3.0137 41 1 4.7439 0.5280 -7.4272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076809405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -29.658171 kcal Electronic energy + Delta-G solvation = -21225.769717 eV Core-core repulsion = 18019.238091 eV Total energy + Delta-G solvation = -3206.531627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02958 -40.04422 -38.28779 -34.05529 -32.66112 -31.77900 -31.32357 -29.46770 -28.33592 -25.61750 -24.29110 -23.39750 -22.67789 -20.78706 -19.81151 -19.61921 -17.86746 -16.89761 -16.61110 -15.95266 -15.72520 -15.07591 -14.80290 -14.40161 -14.15375 -13.94129 -13.75244 -13.64761 -13.27718 -12.93260 -12.65522 -12.58501 -12.30789 -11.93472 -11.76642 -11.68320 -11.24858 -11.15057 -11.01178 -10.85954 -10.67669 -10.46550 -10.09940 -9.77846 -9.71320 -9.27885 -9.20910 -8.64073 -8.54449 -7.96820 -6.05671 -4.03932 0.97003 1.06213 3.31306 3.38434 3.39508 3.42113 4.09614 4.22584 4.44734 4.51557 4.66037 4.73205 4.80026 4.91311 5.10364 5.15058 5.17042 5.29006 5.40741 5.51847 5.63118 5.72220 5.77968 5.82651 5.90719 5.94322 5.99136 6.01245 6.07107 6.11051 6.19730 6.23710 6.30475 6.44759 6.48540 6.72434 6.73883 7.13429 7.25222 7.43916 7.58887 7.83343 8.51604 8.98430 9.56827 11.07733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.004697 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.332491 B = 5960.176093 C = 7199.784720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.050 0.950 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.091 0.909 7 C -0.075 4.075 8 C -0.085 4.085 9 C -0.150 4.150 10 C 0.088 3.912 11 F -0.144 7.144 12 C -0.153 4.153 13 C -0.088 4.088 14 C 0.048 3.952 15 N -0.516 5.516 16 C 0.063 3.937 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.266 1.266 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -6.743 20.950 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.076 4.076 6 H 0.109 0.891 7 C -0.076 4.076 8 C -0.103 4.103 9 C -0.169 4.169 10 C 0.068 3.932 11 F -0.122 7.122 12 C -0.172 4.172 13 C -0.106 4.106 14 C -0.080 4.080 15 N -0.240 5.240 16 C -0.064 4.064 17 C -0.049 4.049 18 C -0.560 4.560 19 H 0.089 0.911 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.595 -7.082 20.586 21.829 hybrid contribution 1.248 -0.260 0.096 1.278 sum -0.348 -7.342 20.683 21.950 Atomic orbital electron populations 1.21722 0.94263 1.01981 1.01045 1.22407 0.96258 0.96314 0.90097 0.93207 1.22583 0.99180 0.96420 0.97226 1.21131 0.92587 0.99750 0.94087 0.89056 1.19924 0.96375 0.93635 0.97660 1.20943 0.92753 0.99509 0.97048 1.21145 0.99523 0.96655 0.99529 1.17723 0.84581 0.95454 0.95402 1.91485 1.50097 1.95930 1.74733 1.21113 0.94983 0.98874 1.02183 1.20943 0.96556 0.97090 0.95984 1.23259 0.92447 0.98911 0.93342 1.64813 1.25949 1.27467 1.05818 1.22294 0.99782 0.93132 0.91174 1.19626 0.94931 0.96625 0.93676 1.21073 1.36865 0.97617 1.00448 0.91119 1.24991 0.95393 0.97445 0.95449 1.69913 1.41809 1.35140 1.07373 0.86772 0.78345 0.85723 0.78429 1.20189 1.21456 1.19017 0.92197 0.93080 0.92491 0.91494 0.90884 0.84933 0.84791 0.84902 0.84960 0.89825 0.93283 0.95439 0.91255 0.96196 0.96592 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.33 37.16 0.35 -1.24 16 2 C 0.06 0.78 3.07 -66.64 -0.20 0.57 16 3 H 0.05 0.69 7.57 -51.93 -0.39 0.30 16 4 C -0.12 -1.28 6.06 -25.38 -0.15 -1.44 16 5 C -0.06 -0.67 3.28 -89.91 -0.29 -0.96 16 6 H 0.09 1.02 7.95 -51.93 -0.41 0.60 16 7 C -0.08 -0.84 4.92 -104.61 -0.52 -1.35 16 8 C -0.08 -0.95 8.18 -39.59 -0.32 -1.28 16 9 C -0.15 -1.64 10.03 -39.52 -0.40 -2.03 16 10 C 0.09 0.99 7.30 -39.42 -0.29 0.70 16 11 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 12 C -0.15 -1.53 10.03 -39.51 -0.40 -1.93 16 13 C -0.09 -0.87 9.68 -39.59 -0.38 -1.25 16 14 C 0.05 0.74 4.47 -1.90 -0.01 0.73 16 15 N -0.52 -8.54 5.03 -222.58 -1.12 -9.66 16 16 C 0.06 1.26 4.97 -3.83 -0.02 1.24 16 17 C -0.01 -0.26 3.70 -27.88 -0.10 -0.36 16 18 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 22 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.70 7.17 -51.93 -0.37 0.33 16 30 H 0.07 0.71 7.69 -51.92 -0.40 0.32 16 31 H 0.13 1.45 7.24 -52.49 -0.38 1.07 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.04 7.98 -52.49 -0.42 0.62 16 35 H 0.08 1.39 7.66 -51.93 -0.40 0.99 16 36 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 37 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.02 0.48 7.58 -51.93 -0.39 0.09 16 40 H 0.02 0.38 5.84 -51.93 -0.30 0.08 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -30.57 330.69 -9.50 -40.07 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.34 Total: -1.89 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.17 Total: -21.90 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.35 Total: -36.80 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.57 -9.50 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076809405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.412 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds