Wall clock time and date at job start Mon Mar 30 2020 02:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.90506 * 2 1 4 4 C 1.53995 * 110.08508 * 121.20251 * 2 1 3 5 5 C 1.54593 * 105.13858 * 120.67126 * 4 2 1 6 6 H 1.08998 * 110.72026 * 263.42001 * 5 4 2 7 7 C 1.50704 * 110.72265 * 140.32041 * 5 4 2 8 8 C 1.38249 * 119.97162 * 299.72118 * 7 5 4 9 9 C 1.38198 * 120.02028 * 179.77010 * 8 7 5 10 10 C 1.38454 * 119.97869 * 0.50697 * 9 8 7 11 11 F 1.35096 * 120.02984 * 179.77025 * 10 9 8 12 12 C 1.38462 * 119.94695 * 359.74750 * 10 9 8 13 13 C 1.38200 * 119.97568 * 359.97438 * 12 10 9 14 14 C 1.54932 * 102.92491 * 21.96002 * 5 4 2 15 15 N 1.47902 * 109.92047 * 238.89473 * 2 1 3 16 16 C 1.46896 * 111.00075 * 94.60122 * 15 2 1 17 17 C 1.53001 * 109.47230 * 170.00407 * 16 15 2 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.09000 * 109.47119 * 181.11008 * 1 2 3 27 27 H 1.09004 * 109.46929 * 301.10752 * 1 2 3 28 28 H 1.08996 * 109.47486 * 61.10531 * 1 2 3 29 29 H 1.09005 * 110.31376 * 239.59137 * 4 2 1 30 30 H 1.09010 * 110.30657 * 1.65546 * 4 2 1 31 31 H 1.07995 * 119.98617 * 0.02562 * 8 7 5 32 32 H 1.08002 * 120.00637 * 180.25615 * 9 8 7 33 33 H 1.08005 * 120.01306 * 180.02562 * 12 10 9 34 34 H 1.08000 * 119.98785 * 180.02562 * 13 12 10 35 35 H 1.08995 * 110.66794 * 204.15661 * 14 5 4 36 36 H 1.09000 * 110.66503 * 81.01537 * 14 5 4 37 37 H 1.08998 * 109.47372 * 50.00258 * 16 15 2 38 38 H 1.09006 * 109.47513 * 290.00430 * 16 15 2 39 39 H 1.08998 * 109.47065 * 59.99662 * 17 16 15 40 40 H 1.09001 * 109.46892 * 299.99926 * 17 16 15 41 41 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0588 -0.7493 1.2371 5 6 2.9124 -1.9081 0.6728 6 1 2.3313 -2.8293 0.6291 7 6 4.1577 -2.1043 1.4986 8 6 5.0731 -1.0757 1.6229 9 6 6.2131 -1.2529 2.3837 10 6 6.4435 -2.4644 3.0130 11 9 7.5598 -2.6403 3.7533 12 6 5.5285 -3.4956 2.8835 13 6 4.3864 -3.3143 2.1269 14 6 3.2709 -1.4132 -0.7509 15 7 2.0339 -0.7184 -1.1906 16 6 2.3167 0.2157 -2.2885 17 6 3.0630 -0.5191 -3.4038 18 6 3.3536 0.4394 -4.5298 19 1 3.0338 1.4684 -4.4592 20 6 4.0234 0.0012 -5.6526 21 7 4.2723 0.8362 -6.6376 22 14 4.5774 -1.7787 -5.7744 23 1 3.5035 -2.5894 -6.4026 24 1 5.8071 -1.8587 -6.6030 25 1 4.8620 -2.3028 -4.4144 26 1 -0.3633 -1.0275 0.0199 27 1 -0.3633 0.5310 0.8799 28 1 -0.3634 0.4965 -0.8997 29 1 2.6747 -0.0872 1.8458 30 1 1.2289 -1.1404 1.8259 31 1 4.8952 -0.1322 1.1286 32 1 6.9260 -0.4478 2.4840 33 1 5.7070 -4.4410 3.3743 34 1 3.6724 -4.1183 2.0260 35 1 3.4927 -2.2553 -1.4064 36 1 4.1105 -0.7190 -0.7167 37 1 2.9321 1.0357 -1.9185 38 1 1.3793 0.6125 -2.6786 39 1 2.4475 -1.3391 -3.7738 40 1 4.0003 -0.9157 -3.0137 41 1 4.7439 0.5280 -7.4272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076809405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:54 Heat of formation + Delta-G solvation = -46.865395 kcal Electronic energy + Delta-G solvation = -21226.515879 eV Core-core repulsion = 18019.238091 eV Total energy + Delta-G solvation = -3207.277788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89576 -41.02320 -39.30754 -35.76723 -34.19994 -33.15310 -32.10724 -30.93489 -29.51410 -26.77391 -25.86930 -24.35126 -23.73703 -22.10561 -21.08023 -20.83463 -19.00324 -18.67118 -17.49128 -17.05431 -16.59270 -16.44101 -16.09542 -15.75895 -15.57888 -15.14868 -14.90855 -14.60615 -14.43884 -14.21476 -14.02642 -13.67963 -13.44774 -13.37148 -13.02721 -12.89021 -12.72771 -12.38179 -12.10502 -12.05115 -11.90225 -11.69824 -11.64768 -11.48357 -11.35697 -11.32222 -10.78355 -10.06185 -9.50291 -9.30161 -8.31908 -6.36235 0.13620 0.28055 1.34743 1.35713 1.47810 2.34193 2.57824 3.02857 3.03786 3.29992 3.61472 3.74793 3.84833 3.93127 3.97631 4.20034 4.28910 4.34098 4.37316 4.46467 4.48374 4.59025 4.60721 4.85144 4.88965 4.89779 4.95483 5.00496 5.04702 5.10310 5.15704 5.17531 5.22787 5.29813 5.32801 5.43441 5.47773 5.60815 5.63124 5.92873 6.04662 6.19498 6.28389 6.71486 7.28649 8.84893 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.004697 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.332491 B = 5960.176093 C = 7199.784720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.053 3.947 3 H 0.041 0.959 4 C -0.107 4.107 5 C -0.043 4.043 6 H 0.106 0.894 7 C -0.082 4.082 8 C -0.094 4.094 9 C -0.157 4.157 10 C 0.072 3.928 11 F -0.151 7.151 12 C -0.151 4.151 13 C -0.083 4.083 14 C 0.042 3.958 15 N -0.520 5.520 16 C 0.077 3.923 17 C -0.002 4.002 18 C -0.534 4.534 19 H 0.031 0.969 20 C 0.009 3.991 21 N -0.950 5.950 22 Si 0.949 3.051 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.248 1.248 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.018 0.982 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -9.221 23.043 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.056 4.056 3 H 0.059 0.941 4 C -0.145 4.145 5 C -0.062 4.062 6 H 0.124 0.876 7 C -0.083 4.083 8 C -0.113 4.113 9 C -0.176 4.176 10 C 0.053 3.947 11 F -0.129 7.129 12 C -0.169 4.169 13 C -0.101 4.101 14 C -0.086 4.086 15 N -0.244 5.244 16 C -0.051 4.051 17 C -0.039 4.039 18 C -0.573 4.573 19 H 0.050 0.950 20 C -0.188 4.188 21 N -0.590 5.590 22 Si 0.772 3.228 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.172 1.172 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.048 -9.556 22.705 24.719 hybrid contribution 1.371 0.610 -0.547 1.597 sum -0.676 -8.946 22.159 23.906 Atomic orbital electron populations 1.21708 0.93001 1.02469 1.01417 1.22548 0.97231 0.95955 0.89821 0.94106 1.22554 0.99841 0.96003 0.96123 1.21023 0.93112 1.00398 0.91654 0.87609 1.19929 0.96094 0.94211 0.98069 1.20986 0.93166 0.99710 0.97389 1.21273 0.99718 0.97089 0.99537 1.17968 0.84856 0.96094 0.95808 1.91467 1.50530 1.95984 1.74954 1.21387 0.94458 0.99320 1.01770 1.21211 0.96801 0.97102 0.94999 1.23293 0.91620 0.98105 0.95585 1.64775 1.26522 1.26789 1.06347 1.21958 0.98501 0.93099 0.91592 1.19479 0.95482 0.95667 0.93305 1.21413 1.36620 0.96928 1.02291 0.95022 1.25954 0.95445 1.02524 0.94912 1.70061 1.43031 1.37679 1.08268 0.85671 0.78147 0.79590 0.79345 1.19062 1.20887 1.17157 0.91679 0.90585 0.94216 0.90796 0.88595 0.85313 0.84025 0.82782 0.82403 0.91132 0.94420 0.96393 0.92230 0.96240 0.96193 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.33 71.98 0.67 -2.14 16 2 C 0.05 1.33 3.07 45.06 0.14 1.47 16 3 H 0.04 1.11 7.57 -2.38 -0.02 1.09 16 4 C -0.11 -2.06 6.06 31.47 0.19 -1.87 16 5 C -0.04 -0.89 3.28 -10.34 -0.03 -0.93 16 6 H 0.11 1.93 7.95 -2.39 -0.02 1.91 16 7 C -0.08 -1.63 4.92 -19.86 -0.10 -1.72 16 8 C -0.09 -2.00 8.18 22.26 0.18 -1.81 16 9 C -0.16 -3.26 10.03 22.31 0.22 -3.04 16 10 C 0.07 1.50 7.30 22.37 0.16 1.66 16 11 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 12 C -0.15 -2.60 10.03 22.31 0.22 -2.37 16 13 C -0.08 -1.37 9.68 22.26 0.22 -1.16 16 14 C 0.04 1.22 4.47 86.65 0.39 1.61 16 15 N -0.52 -16.72 5.03 -858.10 -4.31 -21.03 16 16 C 0.08 3.10 4.97 86.30 0.43 3.53 16 17 C 0.00 -0.08 3.70 29.85 0.11 0.03 16 18 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 19 H 0.03 2.04 7.99 -2.92 -0.02 2.01 16 20 C 0.01 0.52 5.47 84.66 0.46 0.98 16 21 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 22 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.34 7.17 -2.38 -0.02 1.33 16 30 H 0.10 1.46 7.69 -2.38 -0.02 1.44 16 31 H 0.13 2.75 7.24 -2.91 -0.02 2.73 16 32 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 1.77 7.98 -2.91 -0.02 1.74 16 35 H 0.07 2.24 7.66 -2.39 -0.02 2.22 16 36 H 0.04 1.18 6.57 -2.39 -0.02 1.17 16 37 H 0.02 0.75 7.81 -2.39 -0.02 0.73 16 38 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 40 H 0.02 0.94 5.84 -2.39 -0.01 0.92 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -67.05 330.69 3.11 -63.95 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.94 Total: 9.62 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.51 Total: -36.86 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -4.01 Total: -80.93 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -67.05 3.11 -63.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076809405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.083 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds