Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46873 * 2 1 4 4 C 1.52994 * 109.46935 * 240.00028 * 2 1 3 5 5 C 1.50707 * 109.46708 * 180.70887 * 4 2 1 6 6 C 1.38245 * 119.96859 * 275.91873 * 5 4 2 7 7 C 1.38203 * 120.02355 * 179.72564 * 6 5 4 8 8 C 1.38464 * 119.96867 * 0.57474 * 7 6 5 9 9 F 1.35106 * 120.02017 * 179.67915 * 8 7 6 10 10 C 1.38452 * 119.95139 * 359.70429 * 8 7 6 11 11 C 1.38195 * 119.97767 * 359.97438 * 10 8 7 12 12 N 1.46902 * 109.47038 * 119.99817 * 2 1 3 13 13 C 1.46897 * 110.99980 * 276.70820 * 12 2 1 14 14 C 1.53003 * 109.47096 * 175.60787 * 13 12 2 15 15 C 1.50695 * 115.55022 * 279.31806 * 14 13 12 16 16 H 1.08008 * 119.99718 * 144.33322 * 15 14 13 17 17 C 1.37878 * 120.00341 * 324.32895 * 15 14 13 18 18 N 1.31508 * 119.99886 * 339.73068 * 17 15 14 19 19 Si 1.86802 * 120.00134 * 159.72389 * 17 15 14 20 20 H 1.48492 * 109.46857 * 60.00051 * 19 17 15 21 21 H 1.48493 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47083 * 300.00361 * 19 17 15 23 23 C 1.52997 * 117.49877 * 133.60681 * 14 13 12 24 24 C 1.52996 * 60.00195 * 252.51286 * 23 14 13 25 25 H 1.08998 * 109.47159 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47483 * 300.00018 * 1 2 3 28 28 H 1.08998 * 109.47356 * 300.70360 * 4 2 1 29 29 H 1.08997 * 109.47382 * 60.70879 * 4 2 1 30 30 H 1.08000 * 119.99071 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.01593 * 180.25555 * 7 6 5 32 32 H 1.08007 * 120.01513 * 179.97438 * 10 8 7 33 33 H 1.07997 * 119.99096 * 179.97438 * 11 10 8 34 34 H 1.00893 * 110.99810 * 152.75240 * 12 2 1 35 35 H 1.09003 * 109.47378 * 295.60828 * 13 12 2 36 36 H 1.08999 * 109.47385 * 55.60974 * 13 12 2 37 37 H 0.96997 * 120.00281 * 185.03114 * 18 17 15 38 38 H 1.09006 * 117.49965 * 0.02562 * 23 14 13 39 39 H 1.09000 * 117.50001 * 145.02197 * 23 14 13 40 40 H 1.09002 * 117.49993 * 252.50988 * 24 23 14 41 41 H 1.09003 * 117.51927 * 107.48239 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5469 -0.7364 -1.2404 6 6 4.2513 0.3519 -1.7205 7 6 5.6333 0.3415 -1.7077 8 6 6.3122 -0.7644 -1.2248 9 9 7.6632 -0.7784 -1.2178 10 6 5.6056 -1.8562 -0.7496 11 6 4.2238 -1.8408 -0.7572 12 7 2.0197 -0.6925 1.1995 13 6 2.0441 0.2122 2.3565 14 6 2.4535 -0.5694 3.6065 15 6 1.3557 -1.3655 4.2638 16 1 1.5786 -2.3195 4.7186 17 6 0.0669 -0.8762 4.2847 18 7 -0.1516 0.4086 4.1087 19 14 -1.3690 -2.0382 4.5627 20 1 -1.2174 -2.7059 5.8804 21 1 -2.6394 -1.2696 4.5399 22 1 -1.3917 -3.0631 3.4882 23 6 3.5143 0.0558 4.5147 24 6 3.8679 -1.1515 3.6439 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6664 -1.7452 -1.2556 29 1 1.6871 -0.2001 -2.1391 30 1 3.7216 1.2123 -2.1019 31 1 6.1834 1.1935 -2.0789 32 1 6.1341 -2.7196 -0.3731 33 1 3.6724 -2.6924 -0.3870 34 1 2.9297 -1.0968 1.0373 35 1 2.7622 1.0125 2.1770 36 1 1.0526 0.6402 2.5042 37 1 -1.0498 0.7643 4.1957 38 1 3.9203 1.0241 4.2219 39 1 3.4183 -0.1086 5.5879 40 1 4.0045 -2.1102 4.1443 41 1 4.5067 -0.9781 2.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -3.368351 kcal Electronic energy + Delta-G solvation = -21794.510757 eV Core-core repulsion = 18589.119143 eV Total energy + Delta-G solvation = -3205.391615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.88325 -39.43410 -37.21274 -35.53649 -32.10150 -31.63232 -31.15446 -29.54179 -26.13511 -25.61605 -24.03006 -23.07300 -21.63609 -21.10258 -19.72593 -18.86936 -17.65703 -16.39614 -16.29701 -15.63571 -15.56146 -15.13127 -14.55725 -14.41444 -14.15436 -13.57206 -13.45386 -13.29560 -13.17778 -12.64415 -12.36333 -11.83668 -11.72762 -11.64829 -11.43682 -11.08237 -11.00702 -10.90469 -10.74396 -10.66731 -10.42552 -10.25910 -10.02896 -9.18583 -9.10828 -9.07373 -8.63097 -8.48779 -7.91928 -7.37491 -5.99679 -3.93539 1.13013 1.21661 3.34932 3.39902 3.46230 3.56609 4.25813 4.45621 4.67329 4.78309 4.85614 4.88310 5.11499 5.26356 5.31660 5.40364 5.60497 5.68721 5.71261 5.88515 5.97625 6.07783 6.11317 6.13750 6.19884 6.24127 6.29963 6.44298 6.52640 6.60038 6.68525 6.74195 6.81383 6.86899 6.91513 7.02249 7.16964 7.39667 7.70790 8.08572 8.13976 8.36562 8.61321 8.97627 9.61699 11.04026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.005261 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.028783 B = 5321.212899 C = 6023.109719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.032 0.968 4 C -0.084 4.084 5 C -0.088 4.088 6 C -0.091 4.091 7 C -0.154 4.154 8 C 0.087 3.913 9 F -0.145 7.145 10 C -0.149 4.149 11 C -0.084 4.084 12 N -0.669 5.669 13 C 0.087 3.913 14 C 0.069 3.931 15 C -0.477 4.477 16 H 0.057 0.943 17 C 0.080 3.920 18 N -0.876 5.876 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.274 1.274 23 C -0.207 4.207 24 C -0.212 4.212 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.325 0.675 35 H -0.014 1.014 36 H 0.126 0.874 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -0.373 -13.043 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.050 0.950 4 C -0.121 4.121 5 C -0.088 4.088 6 C -0.109 4.109 7 C -0.172 4.172 8 C 0.068 3.932 9 F -0.123 7.123 10 C -0.167 4.167 11 C -0.102 4.102 12 N -0.301 5.301 13 C -0.041 4.041 14 C 0.068 3.932 15 C -0.514 4.514 16 H 0.075 0.925 17 C -0.122 4.122 18 N -0.514 5.514 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.249 4.249 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.004 0.996 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.657 -0.504 -12.958 14.148 hybrid contribution 0.518 0.049 0.100 0.530 sum 6.175 -0.455 -12.858 14.271 Atomic orbital electron populations 1.21762 0.94551 1.02207 1.00997 1.21387 0.95923 0.95118 0.89460 0.95003 1.20887 0.89696 1.02870 0.98669 1.20086 0.96671 0.93946 0.98081 1.20909 0.92859 0.98218 0.98877 1.21090 0.95133 0.97934 1.03083 1.17722 0.76696 0.96276 1.02522 1.91481 1.29293 1.96920 1.94630 1.21166 0.94998 0.98319 1.02262 1.21080 0.93052 0.98636 0.97405 1.60512 1.31315 1.35493 1.02801 1.21869 1.03591 0.90947 0.87660 1.18885 0.86203 0.95450 0.92694 1.20354 0.91243 1.04100 1.35700 0.92497 1.24826 0.98514 0.94594 0.94290 1.69826 1.21535 1.11434 1.48584 0.86754 0.81610 0.81602 0.78585 1.20593 1.21487 1.19944 1.22996 1.09685 0.94359 0.97539 1.22780 1.03574 0.97002 1.01559 0.93847 0.92274 0.91560 0.89941 0.90660 0.85241 0.85071 0.84757 0.84329 0.85611 0.99605 0.85673 0.92915 0.92184 0.90501 0.90829 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.39 37.16 0.35 -1.92 16 2 C 0.09 1.50 2.70 -67.71 -0.18 1.32 16 3 H 0.03 0.54 7.88 -51.93 -0.41 0.13 16 4 C -0.08 -1.08 5.04 -27.88 -0.14 -1.22 16 5 C -0.09 -1.13 4.51 -104.61 -0.47 -1.60 16 6 C -0.09 -1.08 9.72 -39.59 -0.38 -1.47 16 7 C -0.15 -1.85 10.03 -39.51 -0.40 -2.24 16 8 C 0.09 1.14 7.30 -39.42 -0.29 0.85 16 9 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 10 C -0.15 -1.88 10.03 -39.52 -0.40 -2.27 16 11 C -0.08 -1.08 8.01 -39.59 -0.32 -1.39 16 12 N -0.67 -13.31 6.28 -106.73 -0.67 -13.98 16 13 C 0.09 2.04 5.15 -3.82 -0.02 2.02 16 14 C 0.07 1.70 1.95 -155.66 -0.30 1.40 16 15 C -0.48 -13.00 8.99 -34.44 -0.31 -13.31 16 16 H 0.06 1.57 7.90 -52.48 -0.41 1.16 16 17 C 0.08 2.16 5.07 -17.82 -0.09 2.07 16 18 N -0.88 -23.94 11.03 55.43 0.61 -23.33 16 19 Si 0.89 20.98 29.59 -169.99 -5.03 15.95 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.21 -4.88 9.88 -26.73 -0.26 -5.15 16 24 C -0.21 -4.71 9.57 -26.73 -0.26 -4.96 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.29 7.28 -51.93 -0.38 0.91 16 28 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.14 1.69 8.04 -52.49 -0.42 1.27 16 34 H 0.32 6.10 5.36 -39.30 -0.21 5.89 16 35 H -0.01 -0.33 7.94 -51.93 -0.41 -0.74 16 36 H 0.13 3.23 4.42 -51.93 -0.23 3.00 16 37 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.25 8.00 -51.93 -0.42 0.84 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -28.02 338.95 -9.66 -37.68 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.25 Total: 8.38 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.47 Total: -27.89 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.06 Total: -37.31 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.02 -9.66 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.314 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds