Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46873 * 2 1 4 4 C 1.52994 * 109.46935 * 240.00028 * 2 1 3 5 5 C 1.50707 * 109.46708 * 180.70887 * 4 2 1 6 6 C 1.38245 * 119.96859 * 275.91873 * 5 4 2 7 7 C 1.38203 * 120.02355 * 179.72564 * 6 5 4 8 8 C 1.38464 * 119.96867 * 0.57474 * 7 6 5 9 9 F 1.35106 * 120.02017 * 179.67915 * 8 7 6 10 10 C 1.38452 * 119.95139 * 359.70429 * 8 7 6 11 11 C 1.38195 * 119.97767 * 359.97438 * 10 8 7 12 12 N 1.46902 * 109.47038 * 119.99817 * 2 1 3 13 13 C 1.46897 * 110.99980 * 276.70820 * 12 2 1 14 14 C 1.53003 * 109.47096 * 175.60787 * 13 12 2 15 15 C 1.50695 * 115.55022 * 279.31806 * 14 13 12 16 16 H 1.08008 * 119.99718 * 144.33322 * 15 14 13 17 17 C 1.37878 * 120.00341 * 324.32895 * 15 14 13 18 18 N 1.31508 * 119.99886 * 339.73068 * 17 15 14 19 19 Si 1.86802 * 120.00134 * 159.72389 * 17 15 14 20 20 H 1.48492 * 109.46857 * 60.00051 * 19 17 15 21 21 H 1.48493 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47083 * 300.00361 * 19 17 15 23 23 C 1.52997 * 117.49877 * 133.60681 * 14 13 12 24 24 C 1.52996 * 60.00195 * 252.51286 * 23 14 13 25 25 H 1.08998 * 109.47159 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47483 * 300.00018 * 1 2 3 28 28 H 1.08998 * 109.47356 * 300.70360 * 4 2 1 29 29 H 1.08997 * 109.47382 * 60.70879 * 4 2 1 30 30 H 1.08000 * 119.99071 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.01593 * 180.25555 * 7 6 5 32 32 H 1.08007 * 120.01513 * 179.97438 * 10 8 7 33 33 H 1.07997 * 119.99096 * 179.97438 * 11 10 8 34 34 H 1.00893 * 110.99810 * 152.75240 * 12 2 1 35 35 H 1.09003 * 109.47378 * 295.60828 * 13 12 2 36 36 H 1.08999 * 109.47385 * 55.60974 * 13 12 2 37 37 H 0.96997 * 120.00281 * 185.03114 * 18 17 15 38 38 H 1.09006 * 117.49965 * 0.02562 * 23 14 13 39 39 H 1.09000 * 117.50001 * 145.02197 * 23 14 13 40 40 H 1.09002 * 117.49993 * 252.50988 * 24 23 14 41 41 H 1.09003 * 117.51927 * 107.48239 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5469 -0.7364 -1.2404 6 6 4.2513 0.3519 -1.7205 7 6 5.6333 0.3415 -1.7077 8 6 6.3122 -0.7644 -1.2248 9 9 7.6632 -0.7784 -1.2178 10 6 5.6056 -1.8562 -0.7496 11 6 4.2238 -1.8408 -0.7572 12 7 2.0197 -0.6925 1.1995 13 6 2.0441 0.2122 2.3565 14 6 2.4535 -0.5694 3.6065 15 6 1.3557 -1.3655 4.2638 16 1 1.5786 -2.3195 4.7186 17 6 0.0669 -0.8762 4.2847 18 7 -0.1516 0.4086 4.1087 19 14 -1.3690 -2.0382 4.5627 20 1 -1.2174 -2.7059 5.8804 21 1 -2.6394 -1.2696 4.5399 22 1 -1.3917 -3.0631 3.4882 23 6 3.5143 0.0558 4.5147 24 6 3.8679 -1.1515 3.6439 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6664 -1.7452 -1.2556 29 1 1.6871 -0.2001 -2.1391 30 1 3.7216 1.2123 -2.1019 31 1 6.1834 1.1935 -2.0789 32 1 6.1341 -2.7196 -0.3731 33 1 3.6724 -2.6924 -0.3870 34 1 2.9297 -1.0968 1.0373 35 1 2.7622 1.0125 2.1770 36 1 1.0526 0.6402 2.5042 37 1 -1.0498 0.7643 4.1957 38 1 3.9203 1.0241 4.2219 39 1 3.4183 -0.1086 5.5879 40 1 4.0045 -2.1102 4.1443 41 1 4.5067 -0.9781 2.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -16.729162 kcal Electronic energy + Delta-G solvation = -21795.090126 eV Core-core repulsion = 18589.119143 eV Total energy + Delta-G solvation = -3205.970983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88899 -40.45911 -38.87094 -36.99751 -34.14096 -32.86536 -32.08581 -30.88655 -27.67549 -27.22640 -25.70754 -24.02013 -22.99259 -22.62519 -21.02076 -20.79440 -18.62586 -18.20456 -17.36512 -16.81715 -16.62247 -16.58915 -16.37754 -15.89872 -15.20052 -15.18161 -14.89897 -14.46887 -14.29805 -14.08191 -13.61695 -13.44821 -13.21722 -12.98819 -12.76001 -12.71238 -12.59445 -12.44033 -12.26814 -12.07099 -12.00122 -11.86496 -11.59104 -11.07374 -10.97289 -10.54375 -10.05481 -9.88294 -9.49119 -8.95855 -8.03240 -6.03207 0.15440 0.28668 1.44645 1.49161 1.55954 2.48411 2.60708 3.04166 3.30589 3.43836 3.77008 3.79083 3.82668 3.98421 4.17272 4.30256 4.36315 4.37800 4.47766 4.58992 4.62540 4.76815 4.80474 4.89040 4.92753 4.98352 5.02949 5.05049 5.08830 5.16676 5.17238 5.28154 5.30313 5.35593 5.51635 5.54365 5.63179 5.69681 5.95081 6.15228 6.47906 6.53567 6.91412 6.92233 7.53926 8.98922 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.005261 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.028783 B = 5321.212899 C = 6023.109719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.090 3.910 3 H 0.028 0.972 4 C -0.073 4.073 5 C -0.097 4.097 6 C -0.092 4.092 7 C -0.155 4.155 8 C 0.071 3.929 9 F -0.150 7.150 10 C -0.155 4.155 11 C -0.093 4.093 12 N -0.676 5.676 13 C 0.101 3.899 14 C 0.041 3.959 15 C -0.500 4.500 16 H 0.045 0.955 17 C 0.044 3.956 18 N -0.894 5.894 19 Si 0.941 3.059 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.213 4.213 24 C -0.187 4.187 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.331 0.669 35 H -0.020 1.020 36 H 0.100 0.900 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -0.547 -14.545 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.046 0.954 4 C -0.110 4.110 5 C -0.097 4.097 6 C -0.110 4.110 7 C -0.174 4.174 8 C 0.052 3.948 9 F -0.129 7.129 10 C -0.173 4.173 11 C -0.111 4.111 12 N -0.309 5.309 13 C -0.028 4.028 14 C 0.040 3.960 15 C -0.537 4.537 16 H 0.063 0.937 17 C -0.156 4.156 18 N -0.532 5.532 19 Si 0.767 3.233 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.251 4.251 24 C -0.225 4.225 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.151 0.849 35 H -0.002 1.002 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.729 -0.684 -14.464 15.573 hybrid contribution 0.528 0.124 0.568 0.785 sum 6.257 -0.560 -13.896 15.250 Atomic orbital electron populations 1.21718 0.94741 1.01691 1.00865 1.21470 0.95718 0.95165 0.89670 0.95370 1.20792 0.89705 1.02839 0.97670 1.20177 0.96682 0.94362 0.98510 1.21174 0.92926 0.98547 0.98307 1.21355 0.95406 0.98165 1.02436 1.17966 0.76596 0.97006 1.03279 1.91464 1.29720 1.96991 1.94751 1.21333 0.95095 0.98739 1.02182 1.21191 0.93234 0.99000 0.97698 1.60424 1.31846 1.35346 1.03325 1.21532 1.01727 0.91019 0.88548 1.19023 0.86762 0.96559 0.93609 1.20548 0.92627 1.04012 1.36499 0.93723 1.25384 1.00338 0.95690 0.94234 1.69930 1.21849 1.12466 1.48965 0.85904 0.79161 0.79868 0.78361 1.20378 1.20959 1.19876 1.22984 1.09631 0.95442 0.97089 1.22734 1.01869 0.96416 1.01435 0.90433 0.92917 0.95185 0.89763 0.87843 0.83143 0.83190 0.83670 0.84097 0.84894 1.00206 0.88183 0.92915 0.91342 0.91447 0.90630 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.39 71.98 0.68 -3.55 16 2 C 0.09 2.81 2.70 44.91 0.12 2.93 16 3 H 0.03 0.92 7.88 -2.39 -0.02 0.90 16 4 C -0.07 -1.68 5.04 29.85 0.15 -1.53 16 5 C -0.10 -2.27 4.51 -19.86 -0.09 -2.36 16 6 C -0.09 -1.95 9.72 22.26 0.22 -1.73 16 7 C -0.16 -3.38 10.03 22.32 0.22 -3.16 16 8 C 0.07 1.74 7.30 22.37 0.16 1.90 16 9 F -0.15 -3.90 17.27 44.97 0.78 -3.12 16 10 C -0.15 -3.68 10.03 22.31 0.22 -3.46 16 11 C -0.09 -2.24 8.01 22.26 0.18 -2.06 16 12 N -0.68 -26.41 6.28 -491.58 -3.09 -29.50 16 13 C 0.10 4.70 5.15 86.30 0.44 5.14 16 14 C 0.04 2.05 1.95 -52.93 -0.10 1.95 16 15 C -0.50 -27.46 8.99 25.60 0.23 -27.23 16 16 H 0.04 2.49 7.90 -2.91 -0.02 2.47 16 17 C 0.04 2.40 5.07 84.66 0.43 2.83 16 18 N -0.89 -49.43 11.03 21.45 0.24 -49.19 16 19 Si 0.94 43.17 29.59 68.60 2.03 45.20 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.21 -9.98 9.88 30.59 0.30 -9.68 16 24 C -0.19 -8.13 9.57 30.59 0.29 -7.84 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.16 7.28 -2.38 -0.02 1.14 16 28 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 29 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.14 3.25 8.04 -2.91 -0.02 3.23 16 34 H 0.33 12.04 5.36 -89.70 -0.48 11.56 16 35 H -0.02 -0.93 7.94 -2.39 -0.02 -0.95 16 36 H 0.10 5.25 4.42 -2.39 -0.01 5.24 16 37 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 38 H 0.07 3.04 8.08 -2.38 -0.02 3.02 16 39 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.08 3.10 8.00 -2.39 -0.02 3.08 16 Total: -1.00 -59.51 338.95 3.95 -55.57 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.53 Total: 28.89 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 3.46 Total: -47.85 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -2.85 Total: -78.69 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -59.51 3.95 -55.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.837 kcal (2) G-P(sol) polarization free energy of solvation -59.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds