Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46664 * 119.99638 * 2 1 3 5 5 C 1.38220 * 120.01010 * 92.03799 * 4 2 1 6 6 C 1.38225 * 120.02675 * 179.97438 * 5 4 2 7 7 C 1.38271 * 120.04890 * 0.02562 * 6 5 4 8 8 C 1.38174 * 120.02580 * 0.02562 * 7 6 5 9 9 C 1.38433 * 120.01391 * 271.75797 * 4 2 1 10 10 F 1.35098 * 120.02734 * 0.02562 * 9 4 2 11 11 N 1.46900 * 109.47205 * 239.99975 * 2 1 3 12 12 C 1.46896 * 110.99662 * 173.28273 * 11 2 1 13 13 C 1.46898 * 111.00090 * 49.32727 * 11 2 1 14 14 C 1.53000 * 109.46988 * 188.52466 * 13 11 2 15 15 C 1.50707 * 115.55841 * 270.24813 * 14 13 11 16 16 H 1.07996 * 120.00035 * 139.97271 * 15 14 13 17 17 C 1.37884 * 119.99775 * 319.96891 * 15 14 13 18 18 N 1.31506 * 119.99891 * 343.26753 * 17 15 14 19 19 Si 1.86803 * 119.99541 * 163.26538 * 17 15 14 20 20 H 1.48500 * 109.47087 * 60.00683 * 19 17 15 21 21 H 1.48500 * 109.46754 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47220 * 300.00299 * 19 17 15 23 23 C 1.52992 * 117.50001 * 55.93224 * 14 13 11 24 24 C 1.53001 * 60.03113 * 107.47946 * 23 14 13 25 25 H 1.08999 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47527 * 300.00194 * 1 2 3 27 27 H 1.09005 * 109.46598 * 60.00291 * 1 2 3 28 28 H 1.08003 * 119.98884 * 359.97438 * 5 4 2 29 29 H 1.07994 * 119.97930 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.98381 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.01274 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47129 * 289.91179 * 12 11 2 33 33 H 1.09005 * 109.47364 * 49.91183 * 12 11 2 34 34 H 1.09003 * 109.47173 * 169.91541 * 12 11 2 35 35 H 1.08993 * 109.46997 * 68.52089 * 13 11 2 36 36 H 1.08999 * 109.47122 * 308.51947 * 13 11 2 37 37 H 0.96999 * 119.99754 * 185.01721 * 18 17 15 38 38 H 1.09005 * 117.50091 * 214.97792 * 23 14 13 39 39 H 1.09004 * 117.49984 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.49605 * 107.50079 * 24 23 14 41 41 H 1.09001 * 117.49825 * 252.52010 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.3028 -2.0650 1.1847 6 6 2.7640 -2.7168 2.3131 7 6 2.9547 -2.0147 3.4889 8 6 2.6839 -0.6606 3.5373 9 6 2.2284 -0.0052 2.4056 10 9 1.9692 1.3199 2.4501 11 7 2.0197 -0.6925 -1.1994 12 6 3.4793 -0.5747 -1.3162 13 6 1.3526 -0.1889 -2.4074 14 6 1.7261 -1.0698 -3.6012 15 6 2.9568 -0.6470 -4.3614 16 1 3.6516 -1.3914 -4.7213 17 6 3.1956 0.6903 -4.5976 18 7 2.2232 1.5655 -4.4642 19 14 4.9006 1.2588 -5.1069 20 1 5.2839 0.5958 -6.3792 21 1 4.8949 2.7314 -5.2977 22 1 5.8785 0.9011 -4.0481 23 6 1.4469 -2.5697 -3.4871 24 6 0.5823 -1.6987 -4.4007 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.1538 -2.6146 0.2670 29 1 2.9747 -3.7754 2.2765 30 1 3.3147 -2.5251 4.3700 31 1 2.8326 -0.1125 4.4559 32 1 3.7423 0.4541 -1.5621 33 1 3.9432 -0.8519 -0.3695 34 1 3.8356 -1.2388 -2.1037 35 1 1.6714 0.8358 -2.5980 36 1 0.2725 -0.2124 -2.2625 37 1 2.3712 2.4946 -4.7001 38 1 2.1533 -3.2508 -3.9620 39 1 0.9975 -2.9290 -2.5613 40 1 0.7199 -1.8067 -5.4766 41 1 -0.4359 -1.4847 -4.0759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = 4.299734 kcal Electronic energy + Delta-G solvation = -22306.893240 eV Core-core repulsion = 19101.834138 eV Total energy + Delta-G solvation = -3205.059102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87650 -40.51839 -39.05868 -36.98326 -34.18222 -32.85525 -31.46035 -30.49502 -28.02458 -27.52399 -25.42332 -24.03564 -23.23197 -22.80673 -21.22821 -20.41841 -18.59254 -18.02887 -17.46588 -16.90293 -16.70871 -16.55860 -16.04289 -15.71665 -15.50425 -15.15254 -14.87612 -14.38839 -14.24156 -14.01161 -13.44442 -13.38274 -13.22372 -13.02423 -12.91073 -12.81708 -12.63504 -12.35620 -12.31794 -12.22537 -12.07484 -11.93143 -11.59612 -11.07916 -10.78643 -10.47542 -10.00368 -9.77273 -9.53568 -9.03405 -8.08444 -6.11058 0.26661 0.38453 1.36949 1.41073 1.46040 2.40008 2.73918 2.98253 3.09909 3.41359 3.68110 3.81969 3.99365 4.15251 4.24951 4.30461 4.34439 4.46909 4.56181 4.58282 4.72119 4.76544 4.80542 4.86557 4.94705 5.04798 5.09277 5.10128 5.17683 5.25650 5.26378 5.29955 5.36245 5.40531 5.55897 5.61357 5.63436 5.69388 5.96736 6.05914 6.35033 6.43739 6.49840 6.89028 7.46098 8.92197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.005661 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.498812 B = 4944.542647 C = 5285.563425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.117 3.883 3 H 0.018 0.982 4 C -0.116 4.116 5 C -0.074 4.074 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.158 4.158 9 C 0.069 3.931 10 F -0.156 7.156 11 N -0.514 5.514 12 C 0.051 3.949 13 C 0.095 3.905 14 C 0.033 3.967 15 C -0.495 4.495 16 H 0.050 0.950 17 C 0.034 3.966 18 N -0.900 5.900 19 Si 0.930 3.070 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.271 1.271 23 C -0.166 4.166 24 C -0.207 4.207 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.151 0.849 32 H -0.010 1.010 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -6.708 15.820 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.036 0.964 4 C -0.117 4.117 5 C -0.092 4.092 6 C -0.147 4.147 7 C -0.108 4.108 8 C -0.176 4.176 9 C 0.049 3.951 10 F -0.134 7.134 11 N -0.238 5.238 12 C -0.098 4.098 13 C -0.032 4.032 14 C 0.032 3.968 15 C -0.532 4.532 16 H 0.068 0.932 17 C -0.166 4.166 18 N -0.538 5.538 19 Si 0.756 3.244 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.196 1.196 23 C -0.203 4.203 24 C -0.245 4.245 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.169 0.831 32 H 0.009 0.991 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.145 -6.923 15.898 17.340 hybrid contribution 0.876 2.027 -1.025 2.435 sum 0.732 -4.896 14.873 15.675 Atomic orbital electron populations 1.21828 0.92737 1.02882 1.01655 1.20360 0.96255 0.93634 0.88923 0.96448 1.19870 1.02850 0.95774 0.93197 1.21148 0.95979 0.92369 0.99712 1.21601 0.99199 1.01673 0.92199 1.21389 0.97560 0.92536 0.99277 1.21350 1.02481 0.96559 0.97259 1.17943 1.03829 0.77362 0.95942 1.91430 1.92187 1.32702 1.97127 1.62105 1.05028 1.55063 1.01584 1.22155 0.88333 0.98400 1.00884 1.21645 0.95870 0.98539 0.87174 1.18919 0.93685 0.90206 0.93953 1.20695 1.06134 0.91435 1.34981 0.93189 1.25466 0.98856 0.96938 0.95363 1.70022 1.32341 1.03454 1.47959 0.86043 0.82323 0.77003 0.79014 1.19696 1.21445 1.19614 1.22646 1.02859 0.94772 1.00008 1.22953 0.95761 1.09245 0.96543 0.91028 0.91750 0.92638 0.84474 0.82784 0.81769 0.83136 0.99119 0.91968 0.90954 0.93480 0.92935 0.93162 0.91143 0.89143 0.91954 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.59 71.98 0.62 -3.68 16 2 C 0.12 4.19 2.12 44.17 0.09 4.28 16 3 H 0.02 0.72 7.67 -2.39 -0.02 0.70 16 4 C -0.12 -3.52 4.11 -19.82 -0.08 -3.60 16 5 C -0.07 -1.95 8.31 22.26 0.18 -1.77 16 6 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 7 C -0.09 -1.55 10.04 22.26 0.22 -1.33 16 8 C -0.16 -3.38 10.03 22.31 0.22 -3.16 16 9 C 0.07 1.97 7.24 22.38 0.16 2.13 16 10 F -0.16 -4.97 16.51 44.97 0.74 -4.23 16 11 N -0.51 -20.23 3.39 -901.48 -3.06 -23.29 16 12 C 0.05 2.08 8.53 127.69 1.09 3.17 16 13 C 0.09 4.35 4.33 86.30 0.37 4.72 16 14 C 0.03 1.59 1.31 -52.91 -0.07 1.52 16 15 C -0.50 -26.21 7.22 25.60 0.18 -26.03 16 16 H 0.05 2.67 7.87 -2.91 -0.02 2.65 16 17 C 0.03 1.83 5.04 84.66 0.43 2.26 16 18 N -0.90 -50.54 11.21 21.45 0.24 -50.30 16 19 Si 0.93 42.88 29.57 68.60 2.03 44.91 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C -0.17 -6.89 9.74 30.59 0.30 -6.59 16 24 C -0.21 -9.33 9.89 30.62 0.30 -9.03 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.92 6.13 -2.38 -0.01 1.90 16 28 H 0.14 3.88 7.34 -2.91 -0.02 3.86 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H -0.01 -0.46 8.08 -2.39 -0.02 -0.48 16 33 H 0.06 2.24 6.44 -2.38 -0.02 2.22 16 34 H 0.07 3.17 6.47 -2.39 -0.02 3.15 16 35 H 0.05 2.53 5.44 -2.39 -0.01 2.51 16 36 H 0.05 2.33 5.40 -2.39 -0.01 2.32 16 37 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 38 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 39 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 40 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 Total: -1.00 -58.65 330.62 5.22 -53.43 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.01 Total: 18.87 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 4.25 Total: -39.39 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.82 Total: -73.59 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.74 Total: -4.23 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -58.65 5.22 -53.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.731 kcal (2) G-P(sol) polarization free energy of solvation -58.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds