Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.50692 * 109.47442 * 239.99803 * 2 1 3 5 5 C 1.38225 * 120.01006 * 268.52785 * 4 2 1 6 6 C 1.38222 * 120.02400 * 180.27403 * 5 4 2 7 7 C 1.38271 * 120.05253 * 359.97438 * 6 5 4 8 8 C 1.38179 * 120.02429 * 0.02562 * 7 6 5 9 9 C 1.38431 * 120.01591 * 88.79693 * 4 2 1 10 10 F 1.35098 * 120.02518 * 359.75411 * 9 4 2 11 11 N 1.46906 * 109.47190 * 119.99437 * 2 1 3 12 12 C 1.46898 * 110.99930 * 311.11631 * 11 2 1 13 13 C 1.46899 * 111.00053 * 187.16326 * 11 2 1 14 14 C 1.52996 * 109.47258 * 189.55027 * 13 11 2 15 15 C 1.50705 * 115.55057 * 281.71706 * 14 13 11 16 16 H 1.07997 * 119.99652 * 114.27358 * 15 14 13 17 17 C 1.37872 * 119.99914 * 294.27916 * 15 14 13 18 18 N 1.31515 * 120.00022 * 337.38793 * 17 15 14 19 19 Si 1.86799 * 119.99968 * 157.39713 * 17 15 14 20 20 H 1.48501 * 109.46952 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.46927 * 209.99644 * 19 17 15 22 22 H 1.48492 * 109.47329 * 329.99441 * 19 17 15 23 23 C 1.52996 * 117.50126 * 136.00845 * 14 13 11 24 24 C 1.52993 * 60.00126 * 252.51045 * 23 14 13 25 25 H 1.09006 * 109.47162 * 299.99781 * 1 2 3 26 26 H 1.08994 * 109.47345 * 60.00397 * 1 2 3 27 27 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99037 * 0.27105 * 5 4 2 29 29 H 1.07998 * 119.97654 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.98939 * 180.02562 * 7 6 5 31 31 H 1.08003 * 120.01220 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47100 * 54.37055 * 12 11 2 33 33 H 1.09007 * 109.47165 * 174.36998 * 12 11 2 34 34 H 1.09003 * 109.47390 * 294.36489 * 12 11 2 35 35 H 1.08997 * 109.47082 * 309.55082 * 13 11 2 36 36 H 1.09001 * 109.47365 * 69.54811 * 13 11 2 37 37 H 0.97000 * 120.00085 * 185.05306 * 18 17 15 38 38 H 1.09005 * 117.49891 * 0.02562 * 23 14 13 39 39 H 1.09001 * 117.50041 * 145.02121 * 23 14 13 40 40 H 1.08998 * 117.50145 * 252.51062 * 24 23 14 41 41 H 1.08997 * 117.52109 * 107.47979 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 6 2.2918 -2.0674 -1.1876 6 6 2.7580 -2.7182 -2.3144 7 6 2.9649 -2.0130 -3.4856 8 6 2.7062 -0.6564 -3.5306 9 6 2.2395 -0.0032 -2.4022 10 9 1.9867 1.3232 -2.4450 11 7 2.0197 -0.6924 1.1995 12 6 1.3449 -0.1960 2.4063 13 6 3.4781 -0.5657 1.3221 14 6 3.9783 -1.4876 2.4359 15 6 3.7724 -0.9813 3.8403 16 1 3.1012 -1.5005 4.5084 17 6 4.4407 0.1447 4.2721 18 7 5.5512 0.5195 3.6756 19 14 3.7689 1.1377 5.7046 20 1 4.3342 0.6177 6.9756 21 1 4.1497 2.5636 5.5402 22 1 2.2889 1.0211 5.7369 23 6 5.2376 -2.3112 2.1590 24 6 3.8704 -2.9963 2.2059 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.1303 -2.6194 -0.2735 29 1 2.9609 -3.7784 -2.2800 30 1 3.3288 -2.5226 -4.3655 31 1 2.8675 -0.1058 -4.4457 32 1 0.2654 -0.2739 2.2770 33 1 1.6519 -0.7923 3.2656 34 1 1.6168 0.8465 2.5718 35 1 3.9476 -0.8467 0.3794 36 1 3.7342 0.4663 1.5621 37 1 6.0604 1.2678 4.0244 38 1 5.7099 -2.1960 1.1834 39 1 5.9175 -2.4869 2.9926 40 1 3.6508 -3.6228 3.0705 41 1 3.4426 -3.3321 1.2613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = 15.035003 kcal Electronic energy + Delta-G solvation = -22433.097064 eV Core-core repulsion = 19228.503478 eV Total energy + Delta-G solvation = -3204.593585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.70989 -39.31190 -37.45718 -35.54756 -32.03273 -31.61588 -30.38625 -29.16479 -26.45783 -25.77878 -24.03268 -22.81969 -21.94556 -20.98424 -19.62773 -18.84740 -17.43468 -16.34648 -16.07726 -15.87052 -15.40969 -14.69533 -14.65264 -14.23480 -14.07496 -13.78459 -13.48428 -12.93147 -12.70025 -12.53320 -12.19219 -12.07045 -11.86665 -11.57985 -11.40217 -11.25698 -11.01819 -10.92854 -10.73549 -10.53126 -10.41034 -10.23031 -10.05124 -9.24010 -9.00450 -8.68656 -8.45597 -8.36734 -8.01640 -7.47134 -6.07831 -4.00759 1.32842 1.42336 3.25552 3.35102 3.38608 3.78173 4.38001 4.39529 4.57046 4.84200 4.98427 5.14316 5.16773 5.39158 5.47960 5.57225 5.61317 5.63204 5.85437 5.98480 6.10004 6.13751 6.24285 6.28748 6.35477 6.37572 6.40800 6.55679 6.59379 6.60252 6.69642 6.87526 6.88463 6.95666 7.09526 7.16321 7.19276 7.46015 7.58737 7.85164 7.95895 8.03314 8.49852 8.92596 9.55107 10.99200 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.006018 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.084402 B = 4651.892162 C = 5153.636010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.113 3.887 3 H 0.045 0.955 4 C -0.098 4.098 5 C -0.060 4.060 6 C -0.136 4.136 7 C -0.101 4.101 8 C -0.162 4.162 9 C 0.093 3.907 10 F -0.143 7.143 11 N -0.523 5.523 12 C 0.024 3.976 13 C 0.102 3.898 14 C 0.055 3.945 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.078 3.922 18 N -0.865 5.865 19 Si 0.870 3.130 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.270 1.270 23 C -0.172 4.172 24 C -0.193 4.193 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.015 0.985 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.260 0.740 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 -3.160 -11.611 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.004 3.996 3 H 0.063 0.937 4 C -0.100 4.100 5 C -0.078 4.078 6 C -0.154 4.154 7 C -0.119 4.119 8 C -0.181 4.181 9 C 0.074 3.926 10 F -0.121 7.121 11 N -0.247 5.247 12 C -0.123 4.123 13 C -0.026 4.026 14 C 0.054 3.946 15 C -0.536 4.536 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.500 5.500 19 Si 0.697 3.303 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.194 1.194 23 C -0.211 4.211 24 C -0.231 4.231 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.166 0.834 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.257 -3.397 -11.695 14.177 hybrid contribution 0.141 1.847 0.776 2.008 sum -7.116 -1.551 -10.919 13.126 Atomic orbital electron populations 1.21895 0.93812 1.02507 1.01542 1.20426 0.95128 0.95000 0.89065 0.93715 1.19956 1.01276 0.94994 0.93741 1.21181 0.94761 0.93084 0.98769 1.21267 1.00766 1.00377 0.93031 1.20934 0.99389 0.93190 0.98370 1.21003 1.03762 0.95722 0.97586 1.17622 1.02306 0.77575 0.95128 1.91459 1.92014 1.31625 1.97027 1.62082 1.06710 1.54853 1.01068 1.22644 0.96589 0.98896 0.94174 1.21666 0.84693 0.99338 0.96860 1.18703 0.95450 0.86631 0.93778 1.20299 1.26864 1.10305 0.96135 0.92044 1.24919 0.94195 0.97429 0.96084 1.70086 1.12234 1.27227 1.40455 0.86939 0.80258 0.80021 0.83070 1.20717 1.21255 1.19433 1.22686 0.91157 1.07708 0.99529 1.22727 1.01827 0.98614 0.99907 0.91641 0.92924 0.91692 0.83421 0.85631 0.85622 0.85342 0.93351 0.87848 0.96631 0.93757 0.94515 0.93020 0.92431 0.90324 0.91109 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.56 37.16 0.32 -1.69 16 2 C 0.11 1.92 2.12 -68.87 -0.15 1.78 16 3 H 0.05 0.84 7.65 -51.93 -0.40 0.45 16 4 C -0.10 -1.58 4.10 -104.56 -0.43 -2.01 16 5 C -0.06 -0.90 8.37 -39.59 -0.33 -1.23 16 6 C -0.14 -1.73 10.04 -39.58 -0.40 -2.13 16 7 C -0.10 -1.18 10.04 -39.59 -0.40 -1.58 16 8 C -0.16 -2.10 10.03 -39.51 -0.40 -2.49 16 9 C 0.09 1.44 7.24 -39.42 -0.29 1.15 16 10 F -0.14 -2.30 16.50 2.25 0.04 -2.26 16 11 N -0.52 -9.99 3.57 -236.29 -0.84 -10.83 16 12 C 0.02 0.47 8.38 60.06 0.50 0.98 16 13 C 0.10 2.27 4.58 -3.83 -0.02 2.25 16 14 C 0.06 1.31 1.24 -155.66 -0.19 1.11 16 15 C -0.50 -12.92 6.15 -34.44 -0.21 -13.13 16 16 H 0.06 1.60 7.55 -52.49 -0.40 1.21 16 17 C 0.08 2.08 5.13 -17.82 -0.09 1.99 16 18 N -0.86 -24.18 13.39 55.43 0.74 -23.44 16 19 Si 0.87 20.44 29.60 -169.99 -5.03 15.41 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.17 -4.01 9.84 -26.74 -0.26 -4.28 16 24 C -0.19 -4.11 9.94 -26.74 -0.27 -4.38 16 25 H 0.06 0.91 6.19 -51.93 -0.32 0.58 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.15 2.35 6.39 -52.49 -0.34 2.01 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.05 0.79 5.83 -51.93 -0.30 0.49 16 33 H 0.10 2.22 5.29 -51.93 -0.27 1.95 16 34 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 35 H 0.04 0.98 6.33 -51.93 -0.33 0.65 16 36 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 37 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.06 1.29 8.10 -51.93 -0.42 0.86 16 39 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.30 7.17 -51.93 -0.37 0.92 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -27.32 331.75 -8.78 -36.10 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.08 Total: 3.67 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.61 Total: -23.65 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.10 Total: -34.27 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.32 -8.78 -36.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.137 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds