Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 N 1.46496 * 109.47575 * 239.99149 * 2 1 3 5 5 C 1.34777 * 119.99614 * 84.99689 * 4 2 1 6 6 O 1.21588 * 120.00178 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99964 * 180.02562 * 5 4 2 8 8 C 1.46493 * 119.99864 * 179.73002 * 7 5 4 9 9 C 1.53001 * 109.47084 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47182 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46808 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00289 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00080 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99724 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00211 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47283 * 90.00145 * 15 13 11 17 17 H 1.48503 * 109.47123 * 210.00236 * 15 13 11 18 18 H 1.48500 * 109.47547 * 329.99942 * 15 13 11 19 19 C 1.50706 * 109.47023 * 119.99273 * 2 1 3 20 20 C 1.38670 * 120.41611 * 259.72723 * 19 2 1 21 21 C 1.38637 * 118.41775 * 179.78385 * 20 19 2 22 22 C 1.38226 * 119.15847 * 0.50886 * 21 20 19 23 23 N 1.31858 * 120.76640 * 359.72630 * 22 21 20 24 24 C 1.31891 * 121.72243 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47400 * 300.00490 * 1 2 3 27 27 H 1.09001 * 109.47056 * 60.01036 * 1 2 3 28 28 H 0.96996 * 120.00499 * 265.00266 * 4 2 1 29 29 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 31 31 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 32 32 H 1.09007 * 109.46593 * 299.99743 * 9 8 7 33 33 H 1.08993 * 109.47372 * 59.99485 * 9 8 7 34 34 H 1.08993 * 109.47057 * 299.99535 * 10 9 8 35 35 H 1.09001 * 109.47095 * 59.99863 * 10 9 8 36 36 H 0.96993 * 120.00031 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.79417 * 0.02562 * 20 19 2 38 38 H 1.07998 * 120.41809 * 180.21784 * 21 20 19 39 39 H 1.08000 * 119.61780 * 179.74789 * 22 21 20 40 40 H 1.08000 * 119.61210 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1471 -0.0185 -2.3570 6 8 1.8583 1.1613 -2.4117 7 7 2.5960 -0.6541 -3.4576 8 6 2.7302 0.0752 -4.7210 9 6 3.2548 -0.8711 -5.8028 10 6 3.3944 -0.1096 -7.1225 11 6 3.9116 -1.0416 -8.1879 12 1 4.1195 -2.0738 -7.9478 13 6 4.1184 -0.5768 -9.4694 14 7 3.8648 0.6802 -9.7618 15 14 4.7589 -1.7321 -10.7900 16 1 3.6139 -2.3820 -11.4769 17 1 5.5560 -0.9613 -11.7779 18 1 5.6160 -2.7715 -10.1654 19 6 2.0323 -0.7103 1.2306 20 6 2.4674 0.0135 2.3305 21 6 2.9168 -0.6822 3.4423 22 6 2.9262 -2.0641 3.4136 23 7 2.5095 -2.7195 2.3480 24 6 2.0708 -2.0908 1.2748 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.2491 -1.6319 -1.1524 29 1 2.8260 -1.5954 -3.4140 30 1 1.7574 0.4652 -5.0206 31 1 3.4287 0.9019 -4.5910 32 1 4.2275 -1.2615 -5.5035 33 1 2.5560 -1.6974 -5.9327 34 1 2.4215 0.2803 -7.4216 35 1 4.0930 0.7169 -6.9929 36 1 4.0106 1.0073 -10.6632 37 1 2.4528 1.0934 2.3228 38 1 3.2596 -0.1510 4.3179 39 1 3.2787 -2.6135 4.2741 40 1 1.7371 -2.6617 0.4209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171415272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -36.706229 kcal Electronic energy + Delta-G solvation = -20218.807142 eV Core-core repulsion = 17031.889850 eV Total energy + Delta-G solvation = -3186.917292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59273 -40.72341 -37.47918 -36.52933 -35.18792 -33.73328 -33.04597 -32.10086 -30.36113 -28.39807 -25.57112 -24.87264 -24.53783 -22.48763 -22.28753 -21.53867 -19.50736 -18.57128 -18.11319 -17.60167 -16.85403 -16.80677 -16.51601 -16.07759 -15.68332 -15.36772 -15.27358 -15.02204 -14.41573 -14.23214 -14.00543 -13.99006 -13.72539 -13.52280 -13.28427 -12.75141 -12.65579 -12.53609 -12.36052 -12.28540 -11.65815 -11.64699 -11.30549 -11.14323 -10.80845 -10.54481 -10.44224 -10.39912 -10.00897 -9.80582 -8.18729 -6.30053 0.08903 0.30717 1.42194 1.43570 1.54425 1.68205 2.13411 2.42582 2.83522 3.15016 3.28241 3.36777 3.69055 3.92151 3.99675 4.10912 4.17876 4.24604 4.28667 4.37826 4.56673 4.58026 4.70257 4.81503 4.87965 4.97587 5.01172 5.15072 5.18493 5.18836 5.26910 5.47540 5.51193 5.55528 5.72611 5.72772 5.85495 5.97044 6.23714 6.87315 6.99236 7.07482 7.39394 7.56237 8.93437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.002495 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.431848 B =11221.072243 C =11665.336152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.210 3.790 3 H 0.083 0.917 4 N -0.729 5.729 5 C 0.701 3.299 6 O -0.635 6.635 7 N -0.731 5.731 8 C 0.150 3.850 9 C -0.101 4.101 10 C 0.023 3.977 11 C -0.540 4.540 12 H 0.066 0.934 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.163 4.163 22 C 0.086 3.914 23 N -0.509 5.509 24 C 0.096 3.904 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.408 0.592 29 H 0.411 0.589 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.068 0.932 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -6.004 28.562 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.104 3.896 3 H 0.101 0.899 4 N -0.386 5.386 5 C 0.401 3.599 6 O -0.516 6.516 7 N -0.386 5.386 8 C 0.026 3.974 9 C -0.139 4.139 10 C -0.014 4.014 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.185 1.185 19 C -0.148 4.148 20 C -0.097 4.097 21 C -0.183 4.183 22 C -0.070 4.070 23 N -0.217 5.217 24 C -0.061 4.061 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.245 0.755 29 H 0.248 0.752 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.196 0.804 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.937 -5.738 28.379 29.220 hybrid contribution 0.409 0.084 -1.101 1.177 sum -3.528 -5.654 27.279 28.081 Atomic orbital electron populations 1.22143 0.93547 1.02982 1.02545 1.19497 0.94437 0.95751 0.79926 0.89871 1.45110 1.71531 1.14119 1.07862 1.16099 0.78092 0.84678 0.81062 1.90893 1.58950 1.16411 1.85355 1.45046 1.70464 1.14566 1.08532 1.21074 0.99941 0.94645 0.81786 1.21589 1.00889 0.97883 0.93491 1.18943 0.95145 0.95110 0.92242 1.21682 1.43609 0.97268 0.95254 0.91551 1.26030 0.95889 0.96773 1.01492 1.70113 1.50077 1.16398 1.20959 0.85413 0.78498 0.78631 0.78286 1.19812 1.21064 1.18457 1.20862 1.01930 0.95493 0.96547 1.21805 0.93883 1.01826 0.92140 1.22480 1.00181 0.95597 1.00008 1.23317 0.94651 0.92711 0.96348 1.67741 1.10873 1.42027 1.01081 1.22699 0.95519 0.91389 0.96514 0.91282 0.90076 0.93445 0.75458 0.75244 0.93402 0.93499 0.91458 0.91330 0.98892 0.98942 0.92824 0.82953 0.81645 0.80438 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.46 71.98 0.68 -1.93 16 2 C 0.21 3.82 2.80 44.25 0.12 3.94 16 3 H 0.08 1.82 7.47 -2.39 -0.02 1.80 16 4 N -0.73 -14.60 5.03 -461.40 -2.32 -16.92 16 5 C 0.70 20.53 8.53 179.05 1.53 22.05 16 6 O -0.63 -24.45 16.01 -3.99 -0.06 -24.51 16 7 N -0.73 -20.25 5.56 -478.52 -2.66 -22.91 16 8 C 0.15 5.36 5.67 86.38 0.49 5.85 16 9 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 10 C 0.02 1.22 4.97 29.85 0.15 1.37 16 11 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 12 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 14 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 15 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.15 -2.18 4.97 -19.77 -0.10 -2.28 16 20 C -0.07 -0.86 9.82 22.47 0.22 -0.64 16 21 C -0.16 -1.61 10.11 22.36 0.23 -1.39 16 22 C 0.09 1.07 11.18 84.69 0.95 2.02 16 23 N -0.51 -8.78 10.36 -195.84 -2.03 -10.81 16 24 C 0.10 1.48 10.23 84.67 0.87 2.35 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.41 5.84 6.91 -92.71 -0.64 5.20 16 29 H 0.41 8.53 8.49 -92.71 -0.79 7.74 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.16 1.95 6.93 -2.91 -0.02 1.93 16 Total: -1.00 -74.63 341.98 0.84 -73.79 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.38 Total: 14.59 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.99 Total: -2.11 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -6.73 Total: -107.67 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -74.63 0.84 -73.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171415272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds