Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47167 * 2 1 4 4 N 1.46496 * 109.47070 * 119.99525 * 2 1 3 5 5 C 1.34777 * 120.00443 * 275.00319 * 4 2 1 6 6 O 1.21594 * 119.99451 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00363 * 179.97438 * 5 4 2 8 8 C 1.46507 * 120.00109 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46968 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46826 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47200 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99865 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00376 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99862 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00299 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47207 * 60.00341 * 15 13 11 17 17 H 1.48503 * 109.47058 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47258 * 299.99973 * 15 13 11 19 19 C 1.50697 * 109.47396 * 239.99670 * 2 1 3 20 20 C 1.38678 * 120.42012 * 100.00057 * 19 2 1 21 21 C 1.38625 * 118.42261 * 180.02562 * 20 19 2 22 22 C 1.38222 * 119.16079 * 359.97438 * 21 20 19 23 23 N 1.31852 * 120.76489 * 0.02562 * 22 21 20 24 24 C 1.31887 * 121.72468 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47362 * 300.00422 * 1 2 3 26 26 H 1.08999 * 109.47129 * 60.00546 * 1 2 3 27 27 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 28 28 H 0.97009 * 120.00094 * 95.00348 * 4 2 1 29 29 H 0.96995 * 120.00368 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.46926 * 299.99926 * 8 7 5 31 31 H 1.08993 * 109.47142 * 59.99719 * 8 7 5 32 32 H 1.09001 * 109.47085 * 299.99644 * 9 8 7 33 33 H 1.08992 * 109.47128 * 60.00100 * 9 8 7 34 34 H 1.09002 * 109.47627 * 299.99961 * 10 9 8 35 35 H 1.09007 * 109.47096 * 59.99684 * 10 9 8 36 36 H 0.96998 * 119.99909 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.78653 * 0.29511 * 20 19 2 38 38 H 1.07998 * 120.41681 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.61999 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.61657 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1618 2.4116 7 7 2.5957 -0.6535 3.4577 8 6 2.7350 0.0773 4.7199 9 6 3.2596 -0.8689 5.8018 10 6 3.4056 -0.1056 7.1197 11 6 3.9217 -1.0376 8.1855 12 1 4.1255 -2.0709 7.9467 13 6 4.1346 -0.5709 9.4653 14 7 3.8869 0.6876 9.7560 15 14 4.7749 -1.7261 10.7863 16 1 6.0971 -2.2631 10.3757 17 1 4.9166 -0.9852 12.0654 18 1 3.8195 -2.8483 10.9680 19 6 2.0324 -0.7104 -1.2304 20 6 2.4623 0.0130 -2.3326 21 6 2.9157 -0.6827 -3.4426 22 6 2.9248 -2.0646 -3.4138 23 7 2.5084 -2.7198 -2.3480 24 6 2.0705 -2.0910 -1.2746 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2491 -1.6317 1.1527 29 1 2.8264 -1.5946 3.4143 30 1 3.4363 0.9012 4.5871 31 1 1.7643 0.4713 5.0206 32 1 2.5587 -1.6931 5.9346 33 1 4.2303 -1.2625 5.5007 34 1 4.1067 0.7184 6.9866 35 1 2.4349 0.2884 7.4209 36 1 4.0364 1.0158 10.6565 37 1 2.4482 1.0929 -2.3248 38 1 3.2583 -0.1517 -4.3183 39 1 3.2761 -2.6141 -4.2746 40 1 1.7371 -2.6617 -0.4205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171415274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = -13.037080 kcal Electronic energy + Delta-G solvation = -20217.627234 eV Core-core repulsion = 17031.736314 eV Total energy + Delta-G solvation = -3185.890921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85587 -39.70723 -36.41103 -35.13318 -33.38231 -32.87330 -31.89642 -30.87199 -29.56357 -26.61223 -24.70277 -24.10261 -23.11821 -21.57630 -20.76119 -20.31159 -18.41940 -17.50538 -16.89013 -16.42252 -15.97850 -15.50505 -15.22920 -14.63246 -14.53876 -14.39246 -14.14650 -13.99940 -13.56097 -13.46944 -13.14257 -12.66660 -12.27055 -12.02357 -11.80038 -11.70596 -11.56328 -10.87956 -10.71587 -10.61618 -10.23457 -10.14048 -9.85104 -9.82808 -9.50496 -9.41615 -9.25078 -9.13006 -8.64059 -8.36207 -6.01048 -4.04190 0.65107 0.85460 2.74467 3.31880 3.32566 3.37298 3.39230 3.41872 3.95173 4.26079 4.32477 4.44582 4.46063 4.53507 4.65897 4.99079 5.01635 5.10784 5.29774 5.34571 5.43169 5.58243 5.67314 5.72203 5.81831 5.83035 5.98504 6.18831 6.24553 6.39556 6.52323 6.62908 6.78925 7.02378 7.04098 7.55166 7.64257 7.77319 7.97776 8.11036 8.38682 8.71817 9.02303 9.59846 11.10205 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.002495 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.027136 B =11220.741526 C =11664.764044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.207 3.793 3 H 0.099 0.901 4 N -0.748 5.748 5 C 0.702 3.298 6 O -0.591 6.591 7 N -0.741 5.741 8 C 0.135 3.865 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.140 4.140 20 C -0.063 4.063 21 C -0.169 4.169 22 C 0.095 3.905 23 N -0.481 5.481 24 C 0.105 3.895 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.393 0.607 29 H 0.394 0.606 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -4.092 -26.994 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.101 3.899 3 H 0.117 0.883 4 N -0.405 5.405 5 C 0.402 3.598 6 O -0.469 6.469 7 N -0.395 5.395 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.143 4.143 20 C -0.090 4.090 21 C -0.189 4.189 22 C -0.062 4.062 23 N -0.189 5.189 24 C -0.052 4.052 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.227 0.773 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.173 0.827 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.517 -3.756 -26.758 27.395 hybrid contribution 0.594 -0.551 0.720 1.084 sum -3.924 -4.307 -26.038 26.682 Atomic orbital electron populations 1.22204 0.94083 1.02479 1.03019 1.19490 0.94048 0.96450 0.79908 0.88289 1.45265 1.72776 1.13546 1.08905 1.15975 0.78431 0.85142 0.80226 1.90920 1.57146 1.14300 1.84574 1.45395 1.70401 1.13897 1.09773 1.21521 1.01298 0.95229 0.80762 1.21891 0.99667 0.98212 0.96082 1.19023 0.97503 0.95472 0.89346 1.21167 1.44049 0.96342 0.94552 0.92712 1.25032 0.95641 0.95111 0.98694 1.69959 1.48704 1.14157 1.20467 0.86638 0.79421 0.80832 0.80975 1.20256 1.21279 1.20250 1.21025 1.00906 0.95532 0.96811 1.21506 0.94395 1.00880 0.92198 1.22170 1.01281 0.95888 0.99515 1.22828 0.95288 0.91854 0.96207 1.67718 1.09805 1.41146 1.00250 1.22538 0.95307 0.91227 0.96146 0.90976 0.91642 0.92312 0.77216 0.77293 0.91947 0.91897 0.92745 0.92775 0.96254 0.96244 0.92870 0.84394 0.84497 0.82653 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.46 37.16 0.35 -1.06 16 2 C 0.21 1.97 2.80 -69.09 -0.19 1.77 16 3 H 0.10 1.08 7.47 -51.93 -0.39 0.70 16 4 N -0.75 -7.86 5.03 -59.82 -0.30 -8.16 16 5 C 0.70 10.41 8.53 -86.92 -0.74 9.67 16 6 O -0.59 -11.18 16.01 5.28 0.08 -11.09 16 7 N -0.74 -10.59 5.56 -65.22 -0.36 -10.95 16 8 C 0.14 2.39 5.67 -4.04 -0.02 2.37 16 9 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.14 -1.15 4.97 -104.48 -0.52 -1.67 16 20 C -0.06 -0.45 9.82 -39.28 -0.39 -0.84 16 21 C -0.17 -1.06 10.11 -39.44 -0.40 -1.46 16 22 C 0.10 0.70 11.18 -17.55 -0.20 0.50 16 23 N -0.48 -4.55 10.36 -13.26 -0.14 -4.69 16 24 C 0.11 0.89 10.23 -17.55 -0.18 0.72 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.39 3.16 6.91 -40.82 -0.28 2.88 16 29 H 0.39 4.49 8.49 -40.82 -0.35 4.14 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.15 1.04 6.93 -52.49 -0.36 0.68 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -34.05 341.98 -8.82 -42.87 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.99 Total: 1.92 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.98 Total: -5.41 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.06 Total: -49.94 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.05 -8.82 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171415274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.833 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds