Wall clock time and date at job start Mon Mar 30 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46828 * 2 1 4 4 N 1.46499 * 109.47670 * 239.99731 * 2 1 3 5 5 C 1.34778 * 119.99821 * 84.99511 * 4 2 1 6 6 O 1.21587 * 120.00132 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99720 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99742 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46782 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46959 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47243 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99732 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99905 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00324 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47077 * 59.99779 * 15 13 11 17 17 H 1.48496 * 109.47167 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47189 * 300.00005 * 15 13 11 19 19 C 1.50703 * 109.47330 * 119.99391 * 2 1 3 20 20 C 1.38230 * 119.61556 * 274.72874 * 19 2 1 21 21 C 1.38628 * 119.15851 * 180.30022 * 20 19 2 22 22 C 1.38678 * 118.42181 * 359.97438 * 21 20 19 23 23 C 1.38183 * 119.15888 * 359.97438 * 22 21 20 24 24 N 1.31854 * 119.61803 * 95.00556 * 19 2 1 25 25 H 1.09005 * 109.46705 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 300.00212 * 1 2 3 27 27 H 1.08998 * 109.47429 * 60.00868 * 1 2 3 28 28 H 0.97002 * 119.99878 * 265.00413 * 4 2 1 29 29 H 0.97002 * 120.00257 * 359.97438 * 7 5 4 30 30 H 1.08991 * 109.47057 * 299.99928 * 8 7 5 31 31 H 1.09002 * 109.46909 * 60.00526 * 8 7 5 32 32 H 1.09001 * 109.47359 * 300.00457 * 9 8 7 33 33 H 1.09000 * 109.47383 * 60.00277 * 9 8 7 34 34 H 1.08996 * 109.47030 * 299.99761 * 10 9 8 35 35 H 1.08999 * 109.47625 * 60.00584 * 10 9 8 36 36 H 0.97005 * 120.00118 * 179.97438 * 14 13 11 37 37 H 1.07992 * 120.42429 * 0.25914 * 20 19 2 38 38 H 1.08001 * 120.79095 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.42216 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.61474 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1615 -2.4117 7 7 2.5960 -0.6538 -3.4576 8 6 2.7354 0.0768 -4.7198 9 6 3.2600 -0.8694 -5.8015 10 6 3.4061 -0.1062 -7.1195 11 6 3.9224 -1.0384 -8.1852 12 1 4.1254 -2.0720 -7.9464 13 6 4.1343 -0.5721 -9.4653 14 7 3.8856 0.6861 -9.7564 15 14 4.7735 -1.7277 -10.7864 16 1 3.8178 -2.8499 -10.9670 17 1 4.9143 -0.9873 -12.0659 18 1 6.0959 -2.2649 -10.3767 19 6 2.0324 -0.7103 1.2305 20 6 2.1667 -0.0115 2.4156 21 6 2.6356 -0.6727 3.5402 22 6 2.9529 -2.0183 3.4304 23 6 2.7916 -2.6508 2.2125 24 7 2.3439 -1.9897 1.1629 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.8268 -1.5950 -3.4140 30 1 1.7646 0.4706 -5.0206 31 1 3.4366 0.9008 -4.5871 32 1 4.2308 -1.2630 -5.5003 33 1 2.5592 -1.6937 -5.9343 34 1 2.4355 0.2875 -7.4208 35 1 4.1072 0.7177 -6.9865 36 1 4.0351 1.0142 -10.6569 37 1 1.9102 1.0364 2.4647 38 1 2.7512 -0.1524 4.4795 39 1 3.3213 -2.5649 4.2860 40 1 3.0361 -3.6986 2.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171731887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:54 Heat of formation + Delta-G solvation = -35.209627 kcal Electronic energy + Delta-G solvation = -20220.446053 eV Core-core repulsion = 17033.593659 eV Total energy + Delta-G solvation = -3186.852395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54402 -40.69693 -37.34130 -36.36837 -35.17676 -33.42591 -33.33324 -32.27679 -30.37772 -28.38911 -25.63244 -24.82169 -24.40353 -22.49405 -22.28397 -21.47717 -19.51190 -18.56287 -17.90560 -17.45936 -16.80528 -16.68954 -16.49218 -16.26035 -15.76204 -15.33272 -15.29665 -15.09428 -14.41190 -14.23639 -13.97883 -13.85223 -13.72149 -13.42943 -13.16814 -12.80106 -12.69769 -12.54065 -12.38783 -12.17011 -11.65583 -11.63775 -11.30440 -11.14665 -10.80816 -10.53761 -10.53306 -10.35442 -9.98034 -9.72718 -8.18201 -6.29810 0.13734 0.37346 1.42069 1.45491 1.53232 1.70242 2.14388 2.42959 2.84325 3.12403 3.15217 3.33160 3.79287 4.07616 4.16860 4.19407 4.21784 4.24934 4.30096 4.30973 4.55711 4.57962 4.74745 4.82103 4.87261 4.97300 5.01065 5.15976 5.17843 5.22083 5.29506 5.47627 5.52470 5.56172 5.72422 5.78903 5.85336 6.03243 6.23961 6.87059 7.00020 7.12275 7.39496 7.58472 8.93765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.002503 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.129788 B =11184.964705 C =11672.850693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.211 3.789 3 H 0.090 0.910 4 N -0.723 5.723 5 C 0.699 3.301 6 O -0.637 6.637 7 N -0.732 5.732 8 C 0.151 3.849 9 C -0.100 4.100 10 C 0.024 3.976 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.105 3.895 20 C -0.169 4.169 21 C -0.072 4.072 22 C -0.171 4.171 23 C 0.089 3.911 24 N -0.505 5.505 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.413 0.587 29 H 0.410 0.590 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.067 0.933 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -7.429 30.669 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.105 3.895 3 H 0.108 0.892 4 N -0.380 5.380 5 C 0.399 3.601 6 O -0.519 6.519 7 N -0.387 5.387 8 C 0.026 3.974 9 C -0.138 4.138 10 C -0.014 4.014 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.033 4.033 20 C -0.189 4.189 21 C -0.098 4.098 22 C -0.190 4.190 23 C -0.068 4.068 24 N -0.215 5.215 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.250 0.750 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.799 -6.683 29.683 30.662 hybrid contribution 0.531 -0.430 -0.299 0.746 sum -3.268 -7.114 29.384 30.409 Atomic orbital electron populations 1.22097 0.93269 1.02564 1.02946 1.19614 0.94717 0.95328 0.79855 0.89172 1.44945 1.70979 1.14590 1.07502 1.16130 0.78215 0.84685 0.81110 1.90874 1.59249 1.16298 1.85432 1.45051 1.70530 1.14477 1.08640 1.21078 0.99920 0.94626 0.81770 1.21589 1.00833 0.97870 0.93549 1.18937 0.95157 0.95101 0.92167 1.21652 1.43805 0.97145 0.95368 0.91576 1.26036 0.95853 0.96811 1.01469 1.70109 1.49951 1.16346 1.21116 0.85456 0.79230 0.78592 0.77487 1.19031 1.21124 1.19027 1.21165 0.96682 0.90775 0.94653 1.22102 1.01217 1.02478 0.93082 1.21990 0.93847 0.94758 0.99225 1.22537 1.00703 0.95894 0.99904 1.23211 0.94175 1.01100 0.88298 1.67189 1.12046 1.08663 1.33621 0.92124 0.89448 0.93105 0.74952 0.75401 0.93384 0.93485 0.91490 0.91419 0.98883 0.98909 0.92800 0.83073 0.81772 0.81806 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.47 71.98 0.68 -2.31 16 2 C 0.21 4.65 2.82 44.25 0.12 4.78 16 3 H 0.09 2.21 7.54 -2.38 -0.02 2.19 16 4 N -0.72 -18.12 5.05 -461.40 -2.33 -20.45 16 5 C 0.70 22.86 8.53 179.05 1.53 24.39 16 6 O -0.64 -26.08 16.01 -3.99 -0.06 -26.15 16 7 N -0.73 -22.50 5.56 -478.54 -2.66 -25.16 16 8 C 0.15 5.67 5.67 86.38 0.49 6.16 16 9 C -0.10 -4.03 5.27 30.59 0.16 -3.87 16 10 C 0.02 1.28 4.97 29.85 0.15 1.43 16 11 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 14 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 15 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.10 1.93 5.89 42.55 0.25 2.18 16 20 C -0.17 -2.27 9.76 22.36 0.22 -2.05 16 21 C -0.07 -0.68 10.18 22.47 0.23 -0.45 16 22 C -0.17 -1.53 10.11 22.36 0.23 -1.30 16 23 C 0.09 1.14 11.18 84.67 0.95 2.09 16 24 N -0.51 -9.26 9.04 -183.88 -1.66 -10.92 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.41 9.01 7.64 -92.71 -0.71 8.30 16 29 H 0.41 9.98 8.49 -92.71 -0.79 9.19 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 40 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -74.83 343.46 0.84 -73.99 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.45 Total: 19.15 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.70 Total: 0.75 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.37 Total: -114.11 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.83 0.84 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171731887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.785 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds