Wall clock time and date at job start Mon Mar 30 2020 02:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.50694 * 109.47260 * 120.00030 * 2 1 3 5 5 C 1.38250 * 119.97505 * 260.00414 * 4 2 1 6 6 C 1.38196 * 120.02428 * 180.27926 * 5 4 2 7 7 C 1.38457 * 119.97339 * 359.50816 * 6 5 4 8 8 F 1.35103 * 120.02364 * 180.21557 * 7 6 5 9 9 C 1.38456 * 119.94977 * 0.48564 * 7 6 5 10 10 C 1.38199 * 119.97506 * 359.75344 * 9 7 6 11 11 N 1.46899 * 109.46908 * 240.00433 * 2 1 3 12 12 C 1.46853 * 110.99599 * 184.20821 * 11 2 1 13 13 C 1.53039 * 109.51980 * 174.15838 * 12 11 2 14 14 C 1.53119 * 109.28139 * 59.18225 * 13 12 11 15 15 C 1.50691 * 109.52526 * 182.44078 * 14 13 12 16 16 H 1.07998 * 120.00446 * 119.67821 * 15 14 13 17 17 C 1.37888 * 119.99839 * 299.68187 * 15 14 13 18 18 N 1.31509 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99818 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47400 * 89.99756 * 19 17 15 21 21 H 1.48506 * 109.46799 * 209.99711 * 19 17 15 22 22 H 1.48498 * 109.47233 * 329.99127 * 19 17 15 23 23 C 1.53119 * 109.15590 * 302.34492 * 14 13 12 24 24 C 1.46845 * 111.00533 * 59.99846 * 11 2 1 25 25 H 1.09001 * 109.47471 * 60.00120 * 1 2 3 26 26 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47261 * 300.00091 * 1 2 3 28 28 H 1.08002 * 119.98396 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.00978 * 179.72210 * 6 5 4 30 30 H 1.07999 * 120.01335 * 179.72141 * 9 7 6 31 31 H 1.07999 * 119.98943 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46448 * 294.17431 * 12 11 2 33 33 H 1.09001 * 109.46204 * 54.14332 * 12 11 2 34 34 H 1.09001 * 109.50477 * 299.23472 * 13 12 11 35 35 H 1.09001 * 109.53180 * 179.13908 * 13 12 11 36 36 H 1.08994 * 109.52217 * 62.24340 * 14 13 12 37 37 H 0.96995 * 120.00520 * 180.02562 * 18 17 15 38 38 H 1.09007 * 109.50327 * 297.70785 * 23 14 13 39 39 H 1.09005 * 109.50088 * 177.59936 * 23 14 13 40 40 H 1.09003 * 109.45919 * 305.85928 * 24 11 2 41 41 H 1.09003 * 109.46277 * 65.82164 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4586 0.0200 2.3241 6 6 2.9249 -0.6303 3.4508 7 6 2.9555 -2.0140 3.4879 8 9 3.4071 -2.6509 4.5905 9 6 2.5283 -2.7445 2.3920 10 6 2.0670 -2.0919 1.2645 11 7 2.0196 -0.6924 -1.1995 12 6 3.4841 -0.7997 -1.1842 13 6 3.9470 -1.6499 -2.3695 14 6 3.4780 -0.9978 -3.6731 15 6 3.8791 -1.8616 -4.8410 16 1 3.1233 -2.2677 -5.4969 17 6 5.2110 -2.1334 -5.0721 18 7 6.1313 -1.6385 -4.2737 19 14 5.7081 -3.2035 -6.5202 20 1 5.9316 -2.3487 -7.7138 21 1 6.9601 -3.9313 -6.1911 22 1 4.6280 -4.1814 -6.8070 23 6 1.9540 -0.8536 -3.6429 24 6 1.5488 -0.0265 -2.4207 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.4317 1.0994 2.2960 29 1 3.2620 -0.0594 4.3033 30 1 2.5559 -3.8238 2.4181 31 1 1.7341 -2.6615 0.4094 32 1 3.9221 0.1957 -1.2582 33 1 3.8042 -1.2688 -0.2538 34 1 3.5206 -2.6498 -2.2887 35 1 5.0349 -1.7170 -2.3670 36 1 3.9351 -0.0134 -3.7729 37 1 7.0682 -1.8294 -4.4364 38 1 1.4961 -1.8410 -3.5822 39 1 1.6179 -0.3512 -4.5500 40 1 0.4632 0.0660 -2.3883 41 1 1.9957 0.9653 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259812349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:33 Heat of formation + Delta-G solvation = -28.264892 kcal Electronic energy + Delta-G solvation = -21747.525537 eV Core-core repulsion = 18541.054327 eV Total energy + Delta-G solvation = -3206.471210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.86643 -39.74820 -37.82268 -34.65687 -32.30522 -31.12673 -30.19144 -30.03662 -28.34794 -25.56899 -23.59190 -23.04456 -21.86679 -21.65570 -20.04221 -18.60114 -17.61982 -16.58744 -16.30127 -15.79133 -15.56165 -15.07720 -14.46481 -14.31723 -14.12454 -13.56703 -13.44190 -13.08310 -12.96079 -12.67632 -12.56625 -12.45019 -12.30133 -11.80404 -11.37255 -11.28641 -10.98399 -10.90925 -10.86428 -10.64475 -10.41025 -10.19747 -9.95486 -9.42799 -9.05699 -8.94052 -8.70039 -8.44189 -8.27771 -7.78762 -5.95797 -4.01128 1.16623 1.28505 3.32028 3.39025 3.42323 3.61324 4.28174 4.30844 4.46510 4.72552 4.81459 4.90394 5.30291 5.31935 5.34701 5.41126 5.48942 5.62039 5.76782 5.87432 5.89809 6.00813 6.07735 6.11162 6.15161 6.18121 6.26462 6.34772 6.39186 6.59380 6.64472 6.64544 6.86722 6.93283 7.09133 7.17165 7.45412 7.62004 7.69295 7.84016 8.06264 8.17867 8.49971 9.02722 9.63314 11.10350 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.004514 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821674 B = 6201.363616 C = 7068.821918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.116 3.884 3 H 0.043 0.957 4 C -0.079 4.079 5 C -0.091 4.091 6 C -0.158 4.158 7 C 0.088 3.912 8 F -0.146 7.146 9 C -0.157 4.157 10 C -0.059 4.059 11 N -0.527 5.527 12 C 0.055 3.945 13 C -0.102 4.102 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.105 4.105 24 C 0.058 3.942 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 3.067 13.320 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.079 4.079 5 C -0.110 4.110 6 C -0.176 4.176 7 C 0.069 3.931 8 F -0.124 7.124 9 C -0.176 4.176 10 C -0.077 4.077 11 N -0.253 5.253 12 C -0.072 4.072 13 C -0.141 4.141 14 C 0.029 3.971 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.143 4.143 24 C -0.070 4.070 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.075 2.571 13.375 16.367 hybrid contribution 0.924 0.164 -0.518 1.072 sum -8.151 2.735 12.857 15.467 Atomic orbital electron populations 1.21870 0.93711 1.02753 1.01413 1.20519 0.95410 0.94788 0.88520 0.93870 1.19902 0.98887 0.94075 0.95070 1.20870 0.97845 0.99972 0.92285 1.21012 1.03976 0.92509 1.00149 1.17742 1.00548 0.90762 0.84026 1.91474 1.86979 1.82356 1.51625 1.21208 1.02495 1.00778 0.93071 1.21036 0.95756 0.94043 0.96871 1.62081 1.12030 1.50750 1.00429 1.22323 0.85270 0.99058 1.00523 1.21645 1.02933 0.96901 0.92578 1.18684 0.88933 0.96162 0.93322 1.21209 0.91847 1.30696 1.11098 0.92787 1.24964 0.96741 0.95981 0.96282 1.69872 1.00505 1.45272 1.37476 0.86651 0.77987 0.80705 0.82981 1.20826 1.21319 1.19953 1.21671 1.00127 0.98679 0.93845 1.22187 0.98603 0.95618 0.90562 0.91979 0.91632 0.92641 0.85431 0.85142 0.84908 0.83802 0.96135 0.92307 0.93887 0.89053 0.96246 0.93118 0.92481 0.93239 0.91896 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.95 37.16 0.33 -1.27 16 2 C 0.12 1.58 2.28 -68.87 -0.16 1.42 16 3 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 4 C -0.08 -1.03 3.68 -104.62 -0.39 -1.42 16 5 C -0.09 -1.07 9.67 -39.59 -0.38 -1.45 16 6 C -0.16 -1.84 10.03 -39.52 -0.40 -2.24 16 7 C 0.09 1.14 7.30 -39.42 -0.29 0.85 16 8 F -0.15 -1.94 17.27 2.25 0.04 -1.90 16 9 C -0.16 -2.00 10.03 -39.52 -0.40 -2.39 16 10 C -0.06 -0.79 8.11 -39.59 -0.32 -1.11 16 11 N -0.53 -8.76 3.87 -228.08 -0.88 -9.64 16 12 C 0.06 1.06 5.07 -3.83 -0.02 1.04 16 13 C -0.10 -2.38 5.12 -26.65 -0.14 -2.51 16 14 C 0.05 1.16 2.16 -91.65 -0.20 0.97 16 15 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 18 N -0.89 -25.41 11.37 55.43 0.63 -24.78 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.11 -2.15 5.32 -26.65 -0.14 -2.29 16 24 C 0.06 0.99 5.22 -3.84 -0.02 0.97 16 25 H 0.06 0.69 6.28 -51.93 -0.33 0.36 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 29 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.14 2.01 7.71 -52.49 -0.40 1.61 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.09 5.96 -51.93 -0.31 0.78 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.93 6.01 -51.93 -0.31 0.62 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -28.00 325.64 -9.50 -37.50 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.28 Total: -0.29 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.90 Total: -22.05 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.25 Total: -34.42 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.00 -9.50 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.236 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds