Wall clock time and date at job start Mon Mar 30 2020 02:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.50694 * 109.47260 * 120.00030 * 2 1 3 5 5 C 1.38250 * 119.97505 * 260.00414 * 4 2 1 6 6 C 1.38196 * 120.02428 * 180.27926 * 5 4 2 7 7 C 1.38457 * 119.97339 * 359.50816 * 6 5 4 8 8 F 1.35103 * 120.02364 * 180.21557 * 7 6 5 9 9 C 1.38456 * 119.94977 * 0.48564 * 7 6 5 10 10 C 1.38199 * 119.97506 * 359.75344 * 9 7 6 11 11 N 1.46899 * 109.46908 * 240.00433 * 2 1 3 12 12 C 1.46853 * 110.99599 * 184.20821 * 11 2 1 13 13 C 1.53039 * 109.51980 * 174.15838 * 12 11 2 14 14 C 1.53119 * 109.28139 * 59.18225 * 13 12 11 15 15 C 1.50691 * 109.52526 * 182.44078 * 14 13 12 16 16 H 1.07998 * 120.00446 * 119.67821 * 15 14 13 17 17 C 1.37888 * 119.99839 * 299.68187 * 15 14 13 18 18 N 1.31509 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99818 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47400 * 89.99756 * 19 17 15 21 21 H 1.48506 * 109.46799 * 209.99711 * 19 17 15 22 22 H 1.48498 * 109.47233 * 329.99127 * 19 17 15 23 23 C 1.53119 * 109.15590 * 302.34492 * 14 13 12 24 24 C 1.46845 * 111.00533 * 59.99846 * 11 2 1 25 25 H 1.09001 * 109.47471 * 60.00120 * 1 2 3 26 26 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47261 * 300.00091 * 1 2 3 28 28 H 1.08002 * 119.98396 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.00978 * 179.72210 * 6 5 4 30 30 H 1.07999 * 120.01335 * 179.72141 * 9 7 6 31 31 H 1.07999 * 119.98943 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46448 * 294.17431 * 12 11 2 33 33 H 1.09001 * 109.46204 * 54.14332 * 12 11 2 34 34 H 1.09001 * 109.50477 * 299.23472 * 13 12 11 35 35 H 1.09001 * 109.53180 * 179.13908 * 13 12 11 36 36 H 1.08994 * 109.52217 * 62.24340 * 14 13 12 37 37 H 0.96995 * 120.00520 * 180.02562 * 18 17 15 38 38 H 1.09007 * 109.50327 * 297.70785 * 23 14 13 39 39 H 1.09005 * 109.50088 * 177.59936 * 23 14 13 40 40 H 1.09003 * 109.45919 * 305.85928 * 24 11 2 41 41 H 1.09003 * 109.46277 * 65.82164 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4586 0.0200 2.3241 6 6 2.9249 -0.6303 3.4508 7 6 2.9555 -2.0140 3.4879 8 9 3.4071 -2.6509 4.5905 9 6 2.5283 -2.7445 2.3920 10 6 2.0670 -2.0919 1.2645 11 7 2.0196 -0.6924 -1.1995 12 6 3.4841 -0.7997 -1.1842 13 6 3.9470 -1.6499 -2.3695 14 6 3.4780 -0.9978 -3.6731 15 6 3.8791 -1.8616 -4.8410 16 1 3.1233 -2.2677 -5.4969 17 6 5.2110 -2.1334 -5.0721 18 7 6.1313 -1.6385 -4.2737 19 14 5.7081 -3.2035 -6.5202 20 1 5.9316 -2.3487 -7.7138 21 1 6.9601 -3.9313 -6.1911 22 1 4.6280 -4.1814 -6.8070 23 6 1.9540 -0.8536 -3.6429 24 6 1.5488 -0.0265 -2.4207 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.4317 1.0994 2.2960 29 1 3.2620 -0.0594 4.3033 30 1 2.5559 -3.8238 2.4181 31 1 1.7341 -2.6615 0.4094 32 1 3.9221 0.1957 -1.2582 33 1 3.8042 -1.2688 -0.2538 34 1 3.5206 -2.6498 -2.2887 35 1 5.0349 -1.7170 -2.3670 36 1 3.9351 -0.0134 -3.7729 37 1 7.0682 -1.8294 -4.4364 38 1 1.4961 -1.8410 -3.5822 39 1 1.6179 -0.3512 -4.5500 40 1 0.4632 0.0660 -2.3883 41 1 1.9957 0.9653 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:33 Heat of formation + Delta-G solvation = -41.877900 kcal Electronic energy + Delta-G solvation = -21748.115842 eV Core-core repulsion = 18541.054327 eV Total energy + Delta-G solvation = -3207.061514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.86804 -40.88740 -39.15547 -36.22715 -34.05664 -32.12209 -31.67550 -31.51540 -29.52020 -27.39438 -24.86785 -24.04202 -23.51357 -23.06039 -21.20817 -20.31179 -18.60017 -18.45276 -17.54786 -16.97427 -16.61669 -16.55824 -16.09862 -15.57106 -15.25050 -14.95215 -14.55741 -14.38286 -14.34498 -14.24018 -14.04085 -13.78639 -13.43530 -13.13503 -12.88864 -12.76486 -12.47673 -12.41299 -12.27915 -11.97953 -11.87743 -11.80756 -11.76695 -11.31657 -10.73745 -10.62309 -10.35747 -9.99324 -9.45948 -9.15744 -8.06688 -6.19864 0.18246 0.33989 1.41027 1.42224 1.52149 2.44573 2.63007 3.03499 3.20570 3.32877 3.70455 3.86365 4.01222 4.23060 4.27067 4.27636 4.39019 4.44351 4.52832 4.55996 4.64971 4.77856 4.87658 4.91900 4.96482 5.01925 5.08205 5.10916 5.15546 5.20772 5.27496 5.31418 5.39459 5.42418 5.59235 5.61162 5.67720 5.96642 6.03735 6.06423 6.32958 6.39549 6.43030 6.92594 7.48057 8.97722 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.004514 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821674 B = 6201.363616 C = 7068.821918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.117 3.883 3 H 0.050 0.950 4 C -0.088 4.088 5 C -0.089 4.089 6 C -0.154 4.154 7 C 0.074 3.926 8 F -0.150 7.150 9 C -0.163 4.163 10 C -0.070 4.070 11 N -0.529 5.529 12 C 0.073 3.927 13 C -0.092 4.092 14 C 0.043 3.957 15 C -0.532 4.532 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.268 1.268 23 C -0.099 4.099 24 C 0.064 3.936 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.056 0.944 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 3.688 14.140 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.089 4.089 5 C -0.107 4.107 6 C -0.172 4.172 7 C 0.055 3.945 8 F -0.129 7.129 9 C -0.181 4.181 10 C -0.089 4.089 11 N -0.254 5.254 12 C -0.055 4.055 13 C -0.131 4.131 14 C 0.025 3.975 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.136 4.136 24 C -0.063 4.063 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.437 3.195 14.199 17.910 hybrid contribution 1.346 -0.022 -0.748 1.540 sum -9.092 3.173 13.451 16.542 Atomic orbital electron populations 1.21846 0.91660 1.02928 1.02762 1.20627 0.96939 0.94602 0.86947 0.93246 1.19966 0.99467 0.93980 0.95465 1.21121 0.96834 1.01162 0.91586 1.21296 1.02964 0.92098 1.00865 1.17948 1.01081 0.91490 0.83964 1.91462 1.87103 1.82554 1.51795 1.21324 1.02380 1.01425 0.93006 1.20987 0.96654 0.94400 0.96838 1.62005 1.09878 1.51817 1.01714 1.21983 0.87282 0.97448 0.98780 1.21387 1.00641 0.97014 0.94042 1.18665 0.91794 0.93872 0.93171 1.21607 0.92146 1.31144 1.12073 0.93061 1.25726 0.96830 0.97234 0.98786 1.70018 1.00646 1.46307 1.38891 0.85667 0.77637 0.79124 0.79897 1.20220 1.21073 1.19271 1.21533 0.96824 0.99261 0.96025 1.22121 1.00515 0.94468 0.89213 0.91381 0.92040 0.90539 0.83019 0.82865 0.84085 0.84824 0.97301 0.91490 0.95030 0.92559 0.99603 0.93198 0.92892 0.92889 0.88521 0.96181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.95 71.98 0.64 -1.98 16 2 C 0.12 2.88 2.28 44.17 0.10 2.98 16 3 H 0.05 1.20 8.00 -2.38 -0.02 1.18 16 4 C -0.09 -2.13 3.68 -19.86 -0.07 -2.21 16 5 C -0.09 -1.83 9.67 22.26 0.22 -1.62 16 6 C -0.15 -3.20 10.03 22.31 0.22 -2.98 16 7 C 0.07 1.81 7.30 22.37 0.16 1.97 16 8 F -0.15 -3.82 17.27 44.97 0.78 -3.04 16 9 C -0.16 -4.01 10.03 22.31 0.22 -3.78 16 10 C -0.07 -1.82 8.11 22.26 0.18 -1.64 16 11 N -0.53 -16.88 3.87 -875.50 -3.38 -20.27 16 12 C 0.07 2.81 5.07 86.33 0.44 3.24 16 13 C -0.09 -4.43 5.12 30.65 0.16 -4.27 16 14 C 0.04 2.19 2.16 -11.46 -0.02 2.17 16 15 C -0.53 -29.62 8.56 25.60 0.22 -29.40 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.70 5.31 84.66 0.45 1.15 16 18 N -0.92 -53.82 11.37 21.45 0.24 -53.57 16 19 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 C -0.10 -3.99 5.32 30.64 0.16 -3.83 16 24 C 0.06 2.08 5.22 86.32 0.45 2.53 16 25 H 0.07 1.25 6.28 -2.39 -0.01 1.24 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.15 2.37 8.04 -2.91 -0.02 2.35 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.13 3.69 7.71 -2.91 -0.02 3.67 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 2.46 5.96 -2.39 -0.01 2.45 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 3.08 6.17 -2.39 -0.01 3.07 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.10 2.54 6.01 -2.39 -0.01 2.52 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -61.32 325.64 4.19 -57.12 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.00 Total: 11.29 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 3.53 Total: -37.66 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -3.14 Total: -73.84 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.32 4.19 -57.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.243 kcal (2) G-P(sol) polarization free energy of solvation -61.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds