Wall clock time and date at job start Mon Mar 30 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46848 * 2 1 4 4 C 1.50697 * 109.46940 * 239.99953 * 2 1 3 5 5 C 1.38245 * 119.97445 * 105.73385 * 4 2 1 6 6 C 1.38197 * 120.02453 * 179.76212 * 5 4 2 7 7 C 1.38463 * 119.97595 * 0.51277 * 6 5 4 8 8 F 1.35100 * 120.02562 * 179.76030 * 7 6 5 9 9 C 1.38463 * 119.94571 * 359.74649 * 7 6 5 10 10 C 1.38196 * 119.97251 * 359.97438 * 9 7 6 11 11 N 1.46896 * 109.47023 * 120.00137 * 2 1 3 12 12 C 1.46851 * 110.99835 * 300.88439 * 11 2 1 13 13 C 1.53043 * 109.52405 * 174.16290 * 12 11 2 14 14 C 1.53120 * 109.27457 * 59.17867 * 13 12 11 15 15 C 1.53114 * 109.16167 * 302.34580 * 14 13 12 16 16 H 1.09006 * 109.50661 * 297.67708 * 15 14 13 17 17 C 1.50701 * 109.50421 * 177.59802 * 15 14 13 18 18 H 1.08003 * 120.00203 * 240.00103 * 17 15 14 19 19 C 1.37876 * 120.00088 * 59.99722 * 17 15 14 20 20 N 1.31517 * 120.00381 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 120.00023 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.47028 * 269.99887 * 21 19 17 23 23 H 1.48505 * 109.47045 * 29.99281 * 21 19 17 24 24 H 1.48495 * 109.47404 * 149.99580 * 21 19 17 25 25 C 1.46848 * 111.00017 * 176.67971 * 11 2 1 26 26 H 1.09002 * 109.47433 * 60.00314 * 1 2 3 27 27 H 1.09003 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47578 * 299.99832 * 1 2 3 29 29 H 1.07995 * 119.98846 * 0.02871 * 5 4 2 30 30 H 1.08003 * 120.01759 * 180.25815 * 6 5 4 31 31 H 1.07994 * 120.00808 * 179.97438 * 9 7 6 32 32 H 1.08002 * 119.98446 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.46091 * 54.14732 * 12 11 2 34 34 H 1.09001 * 109.46495 * 294.17880 * 12 11 2 35 35 H 1.08997 * 109.49938 * 299.24169 * 13 12 11 36 36 H 1.08996 * 109.50465 * 179.11644 * 13 12 11 37 37 H 1.08998 * 109.52134 * 182.43959 * 14 13 12 38 38 H 1.09001 * 109.57789 * 62.28543 * 14 13 12 39 39 H 0.97003 * 119.99985 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.46348 * 65.81831 * 25 11 2 41 41 H 1.09004 * 109.45905 * 305.85126 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.5687 0.0163 -2.2770 6 6 3.0341 -0.6344 -3.4038 7 6 2.9533 -2.0141 -3.4888 8 9 3.4036 -2.6509 -4.5920 9 6 2.4110 -2.7405 -2.4422 10 6 1.9515 -2.0880 -1.3140 11 7 2.0196 -0.6925 1.1994 12 6 1.5315 -0.0389 2.4205 13 6 1.9382 -0.8672 3.6415 14 6 3.4638 -0.9924 3.6820 15 6 3.9504 -1.6317 2.3786 16 1 3.5377 -2.6367 2.2899 17 6 5.4556 -1.7047 2.3853 18 1 6.0243 -1.1981 1.6195 19 6 6.1069 -2.4181 3.3691 20 7 7.4205 -2.4814 3.3753 21 14 5.1234 -3.2948 4.6933 22 1 4.9144 -2.3784 5.8431 23 1 3.8070 -3.7054 4.1421 24 1 5.8667 -4.4974 5.1476 25 6 3.4854 -0.7813 1.1943 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.6279 1.0927 -2.2122 30 1 3.4569 -0.0669 -4.2196 31 1 2.3471 -3.8166 -2.5076 32 1 1.5288 -2.6544 -0.4974 33 1 0.4451 0.0400 2.3807 34 1 1.9654 0.9581 2.4971 35 1 1.4934 -1.8599 3.5723 36 1 1.5894 -0.3738 4.5486 37 1 3.7556 -1.6178 4.5256 38 1 3.9086 -0.0032 3.7908 39 1 7.8786 -2.9836 4.0673 40 1 3.9101 0.2191 1.2766 41 1 3.8181 -1.2415 0.2639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:48 Heat of formation + Delta-G solvation = -20.740260 kcal Electronic energy + Delta-G solvation = -22024.866664 eV Core-core repulsion = 18818.721747 eV Total energy + Delta-G solvation = -3206.144917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.78669 -39.75373 -37.98582 -34.74326 -32.50491 -31.05096 -30.52426 -30.32000 -28.67093 -24.95500 -24.10504 -23.06052 -22.64756 -21.11754 -20.04199 -18.88575 -17.56670 -16.79012 -16.35779 -15.94243 -15.47905 -15.28833 -14.43619 -14.35808 -14.13836 -13.78781 -13.42257 -13.15089 -13.04004 -12.88279 -12.75864 -12.54914 -12.32264 -12.19539 -11.66690 -11.41988 -11.13129 -11.04693 -10.86955 -10.80982 -10.43445 -10.06350 -9.92586 -9.67748 -9.09551 -8.97728 -8.92289 -8.50355 -8.40159 -7.86910 -6.05091 -4.04056 1.23447 1.35982 3.28888 3.40214 3.43229 3.67016 4.24638 4.36599 4.43604 4.72952 4.85841 4.97465 5.25422 5.28535 5.29415 5.39411 5.46230 5.52144 5.55190 5.67730 5.78343 5.86459 5.99377 6.03647 6.11628 6.16325 6.21345 6.22337 6.30202 6.31110 6.38952 6.48236 6.63146 6.64807 6.82282 6.84134 6.99864 7.22339 7.40573 7.58950 7.66152 7.87534 8.54413 8.98477 9.57659 11.08255 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.005936 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.366792 B = 4716.036467 C = 5833.497664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.119 3.881 3 H 0.045 0.955 4 C -0.080 4.080 5 C -0.089 4.089 6 C -0.157 4.157 7 C 0.091 3.909 8 F -0.145 7.145 9 C -0.155 4.155 10 C -0.057 4.057 11 N -0.535 5.535 12 C 0.060 3.940 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.034 0.966 17 C -0.513 4.513 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.902 5.902 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.263 1.263 24 H -0.299 1.299 25 C 0.076 3.924 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 4.722 -8.674 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.063 0.937 4 C -0.081 4.081 5 C -0.108 4.108 6 C -0.175 4.175 7 C 0.072 3.928 8 F -0.124 7.124 9 C -0.174 4.174 10 C -0.076 4.076 11 N -0.260 5.260 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.161 4.161 15 C 0.003 3.997 16 H 0.052 0.948 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.541 5.541 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.188 1.188 24 H -0.227 1.227 25 C -0.050 4.050 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.795 4.158 -8.632 17.626 hybrid contribution 0.245 0.252 0.649 0.738 sum -14.550 4.410 -7.982 17.171 Atomic orbital electron populations 1.21892 0.93821 1.02741 1.01403 1.20480 0.95229 0.94812 0.88371 0.93746 1.19822 0.98984 0.94108 0.95170 1.20859 0.97420 0.99949 0.92550 1.21013 1.03780 0.92599 1.00147 1.17737 0.99961 0.90811 0.84323 1.91474 1.87145 1.82338 1.51432 1.21185 1.01789 1.00750 0.93656 1.20947 0.96450 0.93909 0.96259 1.62092 1.12460 1.51156 1.00275 1.22057 0.99044 0.95457 0.90175 1.21647 0.98230 1.00036 0.95743 1.22035 0.92745 1.00987 1.00309 1.19141 0.96161 0.94910 0.89529 0.94764 1.21001 0.89082 1.32279 1.12769 0.91057 1.24985 0.94673 0.95809 0.97644 1.69905 1.07399 1.42151 1.34629 0.86827 0.80383 0.78694 0.82227 1.20778 1.18833 1.22673 1.22108 0.83423 0.98789 1.00699 0.92494 0.91612 0.92146 0.85459 0.85117 0.84913 0.84146 0.91324 0.95416 0.91820 0.92820 0.93610 0.92613 0.92728 0.95745 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.87 37.16 0.33 -1.18 16 2 C 0.12 1.58 2.28 -68.87 -0.16 1.43 16 3 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 4 C -0.08 -1.08 3.49 -104.62 -0.37 -1.45 16 5 C -0.09 -1.11 9.66 -39.59 -0.38 -1.49 16 6 C -0.16 -1.97 10.03 -39.51 -0.40 -2.36 16 7 C 0.09 1.26 7.30 -39.42 -0.29 0.97 16 8 F -0.15 -2.07 17.27 2.25 0.04 -2.03 16 9 C -0.16 -2.10 10.03 -39.51 -0.40 -2.50 16 10 C -0.06 -0.80 8.47 -39.59 -0.34 -1.13 16 11 N -0.53 -8.60 4.04 -228.08 -0.92 -9.52 16 12 C 0.06 0.91 5.20 -3.83 -0.02 0.89 16 13 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 14 C -0.12 -2.62 4.73 -26.61 -0.13 -2.75 16 15 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 16 H 0.03 0.84 7.21 -51.93 -0.37 0.46 16 17 C -0.51 -14.37 9.15 -34.44 -0.31 -14.68 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 21 Si 0.89 22.12 24.35 -169.99 -4.14 17.98 16 22 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 23 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 25 C 0.08 1.52 4.36 -3.84 -0.02 1.50 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 29 H 0.13 1.32 7.99 -52.49 -0.42 0.90 16 30 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.14 1.95 7.90 -52.49 -0.41 1.54 16 33 H 0.07 0.87 5.98 -51.93 -0.31 0.55 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.04 3.34 -51.93 -0.17 0.86 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.44 6.29 -51.93 -0.33 1.12 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -30.05 319.37 -8.49 -38.54 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.16 Total: -0.10 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.90 Total: -22.67 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.15 Total: -36.53 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.05 -8.49 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.799 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds