Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46848 * 2 1 4 4 C 1.50697 * 109.46940 * 239.99953 * 2 1 3 5 5 C 1.38245 * 119.97445 * 105.73385 * 4 2 1 6 6 C 1.38197 * 120.02453 * 179.76212 * 5 4 2 7 7 C 1.38463 * 119.97595 * 0.51277 * 6 5 4 8 8 F 1.35100 * 120.02562 * 179.76030 * 7 6 5 9 9 C 1.38463 * 119.94571 * 359.74649 * 7 6 5 10 10 C 1.38196 * 119.97251 * 359.97438 * 9 7 6 11 11 N 1.46896 * 109.47023 * 120.00137 * 2 1 3 12 12 C 1.46851 * 110.99835 * 300.88439 * 11 2 1 13 13 C 1.53043 * 109.52405 * 174.16290 * 12 11 2 14 14 C 1.53120 * 109.27457 * 59.17867 * 13 12 11 15 15 C 1.53114 * 109.16167 * 302.34580 * 14 13 12 16 16 H 1.09006 * 109.50661 * 297.67708 * 15 14 13 17 17 C 1.50701 * 109.50421 * 177.59802 * 15 14 13 18 18 H 1.08003 * 120.00203 * 240.00103 * 17 15 14 19 19 C 1.37876 * 120.00088 * 59.99722 * 17 15 14 20 20 N 1.31517 * 120.00381 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 120.00023 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.47028 * 269.99887 * 21 19 17 23 23 H 1.48505 * 109.47045 * 29.99281 * 21 19 17 24 24 H 1.48495 * 109.47404 * 149.99580 * 21 19 17 25 25 C 1.46848 * 111.00017 * 176.67971 * 11 2 1 26 26 H 1.09002 * 109.47433 * 60.00314 * 1 2 3 27 27 H 1.09003 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47578 * 299.99832 * 1 2 3 29 29 H 1.07995 * 119.98846 * 0.02871 * 5 4 2 30 30 H 1.08003 * 120.01759 * 180.25815 * 6 5 4 31 31 H 1.07994 * 120.00808 * 179.97438 * 9 7 6 32 32 H 1.08002 * 119.98446 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.46091 * 54.14732 * 12 11 2 34 34 H 1.09001 * 109.46495 * 294.17880 * 12 11 2 35 35 H 1.08997 * 109.49938 * 299.24169 * 13 12 11 36 36 H 1.08996 * 109.50465 * 179.11644 * 13 12 11 37 37 H 1.08998 * 109.52134 * 182.43959 * 14 13 12 38 38 H 1.09001 * 109.57789 * 62.28543 * 14 13 12 39 39 H 0.97003 * 119.99985 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.46348 * 65.81831 * 25 11 2 41 41 H 1.09004 * 109.45905 * 305.85126 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.5687 0.0163 -2.2770 6 6 3.0341 -0.6344 -3.4038 7 6 2.9533 -2.0141 -3.4888 8 9 3.4036 -2.6509 -4.5920 9 6 2.4110 -2.7405 -2.4422 10 6 1.9515 -2.0880 -1.3140 11 7 2.0196 -0.6925 1.1994 12 6 1.5315 -0.0389 2.4205 13 6 1.9382 -0.8672 3.6415 14 6 3.4638 -0.9924 3.6820 15 6 3.9504 -1.6317 2.3786 16 1 3.5377 -2.6367 2.2899 17 6 5.4556 -1.7047 2.3853 18 1 6.0243 -1.1981 1.6195 19 6 6.1069 -2.4181 3.3691 20 7 7.4205 -2.4814 3.3753 21 14 5.1234 -3.2948 4.6933 22 1 4.9144 -2.3784 5.8431 23 1 3.8070 -3.7054 4.1421 24 1 5.8667 -4.4974 5.1476 25 6 3.4854 -0.7813 1.1943 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.6279 1.0927 -2.2122 30 1 3.4569 -0.0669 -4.2196 31 1 2.3471 -3.8166 -2.5076 32 1 1.5288 -2.6544 -0.4974 33 1 0.4451 0.0400 2.3807 34 1 1.9654 0.9581 2.4971 35 1 1.4934 -1.8599 3.5723 36 1 1.5894 -0.3738 4.5486 37 1 3.7556 -1.6178 4.5256 38 1 3.9086 -0.0032 3.7908 39 1 7.8786 -2.9836 4.0673 40 1 3.9101 0.2191 1.2766 41 1 3.8181 -1.2415 0.2639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259819547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -38.197029 kcal Electronic energy + Delta-G solvation = -22025.623646 eV Core-core repulsion = 18818.721747 eV Total energy + Delta-G solvation = -3206.901900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87537 -40.90895 -39.26527 -36.20284 -34.38843 -32.16671 -32.07134 -31.60842 -29.76201 -26.76034 -25.45228 -24.16253 -23.85381 -22.59900 -21.25129 -20.44101 -18.84420 -18.58634 -17.59770 -17.19814 -16.58575 -16.56871 -16.06567 -15.67807 -15.38225 -15.20285 -14.81801 -14.41907 -14.35251 -14.27007 -14.05625 -13.91275 -13.74350 -13.31144 -12.96510 -12.81818 -12.57761 -12.45285 -12.10771 -12.02902 -11.87894 -11.73549 -11.66087 -11.37229 -10.98763 -10.74772 -10.59266 -9.99680 -9.46375 -9.16368 -8.30061 -6.33456 0.18679 0.34455 1.29691 1.36236 1.47432 2.32936 2.62417 3.04325 3.06160 3.33281 3.70219 3.85275 4.00526 4.06291 4.17419 4.21779 4.32873 4.39918 4.46505 4.54063 4.55844 4.65886 4.77920 4.83299 4.90702 4.96894 4.97510 5.04381 5.12504 5.15926 5.19127 5.20500 5.27178 5.35713 5.40737 5.49585 5.59981 5.67239 5.76941 5.97319 6.18703 6.32396 6.39149 6.74462 7.32181 8.87056 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.005936 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.366792 B = 4716.036467 C = 5833.497664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.119 3.881 3 H 0.050 0.950 4 C -0.089 4.089 5 C -0.091 4.091 6 C -0.157 4.157 7 C 0.072 3.928 8 F -0.151 7.151 9 C -0.164 4.164 10 C -0.069 4.069 11 N -0.536 5.536 12 C 0.059 3.941 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.025 0.975 17 C -0.518 4.518 18 H 0.027 0.973 19 C 0.011 3.989 20 N -0.952 5.952 21 Si 0.953 3.047 22 H -0.267 1.267 23 H -0.245 1.245 24 H -0.301 1.301 25 C 0.094 3.906 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.265 0.735 40 H 0.010 0.990 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 5.604 -8.103 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.090 4.090 5 C -0.110 4.110 6 C -0.175 4.175 7 C 0.053 3.947 8 F -0.130 7.130 9 C -0.183 4.183 10 C -0.087 4.087 11 N -0.261 5.261 12 C -0.068 4.068 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.003 3.997 16 H 0.043 0.957 17 C -0.557 4.557 18 H 0.046 0.954 19 C -0.185 4.185 20 N -0.593 5.593 21 Si 0.780 3.220 22 H -0.193 1.193 23 H -0.169 1.169 24 H -0.230 1.230 25 C -0.034 4.034 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.935 5.057 -8.075 20.309 hybrid contribution 1.280 0.028 0.368 1.332 sum -16.656 5.085 -7.707 19.044 Atomic orbital electron populations 1.21858 0.91290 1.03077 1.02911 1.20609 0.97064 0.94490 0.86698 0.93188 1.20008 0.99121 0.94095 0.95756 1.21143 0.96619 1.01149 0.92048 1.21299 1.03133 0.92248 1.00848 1.17975 1.00762 0.91568 0.84404 1.91454 1.87316 1.82542 1.51680 1.21348 1.01796 1.01428 0.93703 1.20988 0.97077 0.94352 0.96292 1.62029 1.09361 1.52546 1.02121 1.22167 1.01130 0.94839 0.88651 1.21628 0.94323 1.01039 0.98114 1.21931 0.96396 0.99758 0.98016 1.19047 0.92741 0.95394 0.92534 0.95721 1.21352 0.91902 1.31158 1.11266 0.95416 1.25870 0.95566 0.96808 1.00285 1.70062 1.09431 1.43792 1.36007 0.85773 0.79372 0.77372 0.79468 1.19268 1.16922 1.22953 1.21697 0.86337 0.96993 0.98370 0.90833 0.91849 0.90805 0.83157 0.83090 0.84051 0.84430 0.87678 0.95268 0.91637 0.89914 0.94906 0.93542 0.92651 0.97181 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.87 71.98 0.64 -1.70 16 2 C 0.12 2.83 2.28 44.17 0.10 2.93 16 3 H 0.05 1.16 7.94 -2.39 -0.02 1.15 16 4 C -0.09 -2.27 3.49 -19.86 -0.07 -2.34 16 5 C -0.09 -2.11 9.66 22.26 0.22 -1.89 16 6 C -0.16 -3.74 10.03 22.31 0.22 -3.52 16 7 C 0.07 1.96 7.30 22.38 0.16 2.13 16 8 F -0.15 -4.28 17.27 44.97 0.78 -3.51 16 9 C -0.16 -4.42 10.03 22.31 0.22 -4.20 16 10 C -0.07 -1.86 8.47 22.26 0.19 -1.68 16 11 N -0.54 -15.99 4.04 -875.51 -3.53 -19.52 16 12 C 0.06 1.56 5.20 86.33 0.45 2.00 16 13 C -0.11 -3.42 6.09 30.65 0.19 -3.23 16 14 C -0.12 -5.05 4.73 30.67 0.15 -4.91 16 15 C 0.02 1.02 1.85 -11.49 -0.02 1.00 16 16 H 0.02 1.19 7.21 -2.38 -0.02 1.18 16 17 C -0.52 -30.09 9.15 25.60 0.23 -29.85 16 18 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 19 C 0.01 0.67 5.45 84.65 0.46 1.13 16 20 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 21 Si 0.95 45.87 24.35 68.60 1.67 47.54 16 22 H -0.27 -12.15 6.89 99.48 0.69 -11.46 16 23 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 C 0.09 3.70 4.36 86.32 0.38 4.08 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.07 1.10 6.26 -2.39 -0.01 1.09 16 29 H 0.15 2.70 7.99 -2.91 -0.02 2.68 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.14 3.73 7.90 -2.91 -0.02 3.71 16 33 H 0.11 2.07 5.98 -2.39 -0.01 2.06 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.03 1.42 3.34 -2.39 -0.01 1.41 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.05 2.29 6.29 -2.39 -0.01 2.27 16 Total: -1.00 -67.36 319.37 3.66 -63.70 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.93 Total: 12.28 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 3.52 Total: -40.04 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.23 Total: -79.97 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -67.36 3.66 -63.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.502 kcal (2) G-P(sol) polarization free energy of solvation -67.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds