Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46769 * 2 1 4 4 C 1.50694 * 109.47458 * 120.00171 * 2 1 3 5 5 C 1.38250 * 119.97505 * 260.00136 * 4 2 1 6 6 C 1.38196 * 120.02428 * 180.25731 * 5 4 2 7 7 C 1.38459 * 119.97353 * 359.44128 * 6 5 4 8 8 F 1.35105 * 120.02438 * 180.30367 * 7 6 5 9 9 C 1.38456 * 119.94904 * 0.55720 * 7 6 5 10 10 C 1.38199 * 119.97510 * 359.72011 * 9 7 6 11 11 N 1.46897 * 109.46935 * 240.00434 * 2 1 3 12 12 C 1.46843 * 111.00410 * 184.20786 * 11 2 1 13 13 C 1.53034 * 109.52610 * 174.15793 * 12 11 2 14 14 C 1.53117 * 109.28019 * 59.18202 * 13 12 11 15 15 C 1.53124 * 109.15761 * 302.34411 * 14 13 12 16 16 H 1.08999 * 109.53878 * 297.69189 * 15 14 13 17 17 C 1.50707 * 109.50349 * 177.59222 * 15 14 13 18 18 H 1.07998 * 120.00170 * 240.19663 * 17 15 14 19 19 C 1.37877 * 119.99430 * 60.19470 * 17 15 14 20 20 N 1.31516 * 120.00549 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99744 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46848 * 60.00376 * 21 19 17 23 23 H 1.48499 * 109.47132 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47150 * 300.00600 * 21 19 17 25 25 C 1.46853 * 111.00409 * 59.99511 * 11 2 1 26 26 H 1.09010 * 109.46959 * 299.99858 * 1 2 3 27 27 H 1.08997 * 109.47741 * 59.99194 * 1 2 3 28 28 H 1.08993 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.98396 * 359.97139 * 5 4 2 30 30 H 1.08004 * 120.00978 * 179.72210 * 6 5 4 31 31 H 1.08000 * 120.01258 * 179.74646 * 9 7 6 32 32 H 1.08004 * 119.98508 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46357 * 294.17543 * 12 11 2 34 34 H 1.09008 * 109.46243 * 54.13951 * 12 11 2 35 35 H 1.08997 * 109.50324 * 299.23657 * 13 12 11 36 36 H 1.09006 * 109.50451 * 179.12165 * 13 12 11 37 37 H 1.08994 * 109.52663 * 182.44014 * 14 13 12 38 38 H 1.08997 * 109.57599 * 62.27609 * 14 13 12 39 39 H 0.96998 * 119.99933 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.45877 * 305.86046 * 25 11 2 41 41 H 1.09003 * 109.45991 * 65.83142 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4587 0.0200 2.3240 6 6 2.9246 -0.6303 3.4509 7 6 2.9535 -2.0141 3.4886 8 9 3.4030 -2.6510 4.5921 9 6 2.5263 -2.7446 2.3928 10 6 2.0661 -2.0920 1.2648 11 7 2.0196 -0.6924 -1.1995 12 6 3.4840 -0.7998 -1.1843 13 6 3.9468 -1.6500 -2.3696 14 6 3.4778 -0.9979 -3.6732 15 6 1.9537 -0.8536 -3.6429 16 1 1.4952 -1.8407 -3.5826 17 6 1.4890 -0.1589 -4.8970 18 1 0.9578 0.7790 -4.8295 19 6 1.7423 -0.7207 -6.1304 20 7 2.3888 -1.8630 -6.2125 21 14 1.1657 0.1401 -7.6848 22 1 1.7916 1.4842 -7.7675 23 1 1.5588 -0.6633 -8.8703 24 1 -0.3120 0.2833 -7.6522 25 6 1.5487 -0.0265 -2.4207 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0276 0.0005 29 1 2.4319 1.0993 2.2959 30 1 3.2618 -0.0594 4.3034 31 1 2.5522 -3.8239 2.4196 32 1 1.7332 -2.6616 0.4097 33 1 3.9220 0.1956 -1.2584 34 1 3.8042 -1.2689 -0.2539 35 1 3.5204 -2.6498 -2.2888 36 1 5.0349 -1.7165 -2.3670 37 1 3.7678 -1.6226 -4.5179 38 1 3.9349 -0.0135 -3.7742 39 1 2.5666 -2.2583 -7.0803 40 1 0.4631 0.0660 -2.3883 41 1 1.9957 0.9652 -2.4890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259819552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -41.486299 kcal Electronic energy + Delta-G solvation = -21729.819181 eV Core-core repulsion = 18522.774647 eV Total energy + Delta-G solvation = -3207.044533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.85148 -40.88867 -39.15570 -36.07179 -34.28056 -32.07942 -31.89366 -31.33054 -29.58811 -26.87306 -25.37250 -24.05723 -23.55692 -22.85230 -21.24234 -20.31464 -18.60792 -18.39705 -17.43412 -17.08983 -16.55742 -16.38458 -16.18325 -15.57703 -15.27543 -14.93625 -14.56325 -14.40947 -14.33688 -14.21946 -13.90549 -13.80432 -13.65800 -13.17597 -12.82639 -12.71505 -12.52943 -12.47172 -12.33630 -11.95601 -11.86804 -11.79868 -11.64556 -11.29550 -10.82608 -10.61296 -10.34993 -9.98613 -9.45628 -9.11411 -8.05622 -6.19462 0.18877 0.34773 1.43283 1.44053 1.51590 2.44271 2.64418 3.07251 3.21664 3.33648 3.70712 3.87619 4.02806 4.20067 4.23669 4.28645 4.40395 4.45490 4.51126 4.55752 4.65479 4.76222 4.85027 4.90301 4.92903 5.02955 5.09698 5.10959 5.13882 5.20991 5.22752 5.34314 5.37631 5.44365 5.53743 5.64587 5.67806 5.96580 6.01158 6.16178 6.24107 6.40332 6.49151 6.93668 7.48444 8.98715 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036746 B = 0.003926 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.808895 B = 7130.155194 C = 7505.827640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 H 0.050 0.950 4 C -0.086 4.086 5 C -0.087 4.087 6 C -0.151 4.151 7 C 0.076 3.924 8 F -0.150 7.150 9 C -0.159 4.159 10 C -0.071 4.071 11 N -0.536 5.536 12 C 0.069 3.931 13 C -0.109 4.109 14 C -0.103 4.103 15 C 0.054 3.946 16 H -0.002 1.002 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.271 1.271 25 C 0.081 3.919 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 2.865 18.110 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.086 4.086 5 C -0.105 4.105 6 C -0.170 4.170 7 C 0.057 3.943 8 F -0.129 7.129 9 C -0.178 4.178 10 C -0.089 4.089 11 N -0.260 5.260 12 C -0.059 4.059 13 C -0.147 4.147 14 C -0.142 4.142 15 C 0.036 3.964 16 H 0.016 0.984 17 C -0.575 4.575 18 H 0.070 0.930 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.047 4.047 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.262 2.244 18.026 18.167 hybrid contribution 0.239 0.769 -1.127 1.385 sum 0.501 3.013 16.898 17.172 Atomic orbital electron populations 1.21850 0.92730 1.02630 1.02294 1.20572 0.96357 0.94774 0.87229 0.93192 1.19900 0.99502 0.94007 0.95236 1.21097 0.96785 1.01132 0.91483 1.21285 1.02893 0.92115 1.00706 1.17932 1.01033 0.91427 0.83885 1.91467 1.87141 1.82534 1.51719 1.21302 1.02245 1.01429 0.92816 1.20969 0.96674 0.94275 0.97012 1.61986 1.10320 1.52187 1.01548 1.21983 0.87381 0.97941 0.98557 1.21565 0.99366 0.98978 0.94788 1.21460 0.98106 0.97904 0.96703 1.18567 0.92577 0.94193 0.91109 0.98374 1.21515 1.36341 1.07327 0.92292 0.92969 1.25693 0.95252 0.95518 1.01910 1.70030 1.41626 1.18887 1.24932 0.85715 0.78914 0.78572 0.79058 1.19762 1.21128 1.19606 1.22034 0.99137 0.94421 0.89081 0.90302 0.92557 0.92362 0.83110 0.82808 0.83934 0.85061 0.95988 0.90054 0.92978 0.91774 0.92571 0.96113 0.93159 0.91418 0.96868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.95 71.98 0.64 -2.71 16 2 C 0.12 3.13 2.28 44.17 0.10 3.23 16 3 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 4 C -0.09 -2.00 3.68 -19.86 -0.07 -2.07 16 5 C -0.09 -1.65 9.67 22.26 0.22 -1.44 16 6 C -0.15 -2.83 10.03 22.31 0.22 -2.60 16 7 C 0.08 1.67 7.30 22.37 0.16 1.84 16 8 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 9 C -0.16 -3.55 10.03 22.31 0.22 -3.32 16 10 C -0.07 -1.73 8.11 22.26 0.18 -1.55 16 11 N -0.54 -18.05 3.87 -875.53 -3.38 -21.44 16 12 C 0.07 2.28 5.07 86.33 0.44 2.72 16 13 C -0.11 -4.18 6.09 30.64 0.19 -3.99 16 14 C -0.10 -4.94 5.03 30.67 0.15 -4.79 16 15 C 0.05 2.72 2.26 -11.48 -0.03 2.70 16 16 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 17 C -0.54 -29.44 8.56 25.60 0.22 -29.22 16 18 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 19 C 0.02 0.83 5.30 84.65 0.45 1.28 16 20 N -0.92 -53.09 11.36 21.45 0.24 -52.85 16 21 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.08 3.27 4.44 86.32 0.38 3.65 16 26 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.48 6.28 -2.39 -0.02 1.47 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.15 2.18 8.04 -2.91 -0.02 2.16 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.13 3.53 7.72 -2.91 -0.02 3.51 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 2.40 5.96 -2.38 -0.01 2.38 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.06 3.05 6.16 -2.39 -0.01 3.04 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.07 2.69 6.01 -2.39 -0.01 2.67 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -59.73 325.62 4.15 -55.58 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.00 Total: 12.15 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.48 Total: -36.27 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -3.14 Total: -74.29 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -59.73 4.15 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.092 kcal (2) G-P(sol) polarization free energy of solvation -59.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds