Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.70951 * 2 1 4 4 C 1.53317 * 109.70466 * 120.51524 * 2 1 3 5 5 C 1.52740 * 108.33023 * 49.79066 * 4 2 1 6 6 C 1.50629 * 110.57536 * 51.11734 * 5 4 2 7 7 C 1.39137 * 117.74246 * 162.47984 * 6 5 4 8 8 F 1.35097 * 119.75622 * 359.71287 * 7 6 5 9 9 C 1.38163 * 120.48912 * 179.68556 * 7 6 5 10 10 C 1.38222 * 119.73863 * 0.02562 * 9 7 6 11 11 C 1.37940 * 119.80493 * 0.08485 * 10 9 7 12 12 C 1.37611 * 122.58645 * 342.35668 * 6 5 4 13 13 C 1.50644 * 122.56612 * 0.45452 * 12 6 5 14 14 H 1.09004 * 109.24753 * 102.69832 * 13 12 6 15 15 N 1.46894 * 109.25372 * 222.16179 * 13 12 6 16 16 C 1.46898 * 111.00120 * 206.08851 * 15 13 12 17 17 C 1.52999 * 109.47486 * 185.13850 * 16 15 13 18 18 C 1.50698 * 109.47406 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99724 * 359.73272 * 18 17 16 20 20 C 1.37875 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00261 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46864 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47236 * 119.99895 * 22 20 18 25 25 H 1.48500 * 109.47276 * 240.00304 * 22 20 18 26 26 H 1.08999 * 109.47221 * 180.53352 * 1 2 3 27 27 H 1.09004 * 109.46916 * 300.53239 * 1 2 3 28 28 H 1.08996 * 109.47480 * 60.53071 * 1 2 3 29 29 H 1.09001 * 109.68816 * 290.09475 * 4 2 1 30 30 H 1.08996 * 109.74754 * 169.52486 * 4 2 1 31 31 H 1.09000 * 109.25445 * 290.83679 * 5 4 2 32 32 H 1.08998 * 109.22456 * 171.38391 * 5 4 2 33 33 H 1.07994 * 120.12829 * 180.02562 * 9 7 6 34 34 H 1.08000 * 120.09757 * 180.11139 * 10 9 7 35 35 H 1.08002 * 119.70331 * 180.02562 * 11 10 9 36 36 H 1.00902 * 111.00047 * 330.04422 * 15 13 12 37 37 H 1.09001 * 109.47455 * 65.13679 * 16 15 13 38 38 H 1.08999 * 109.46992 * 305.13556 * 16 15 13 39 39 H 1.09001 * 109.46913 * 59.99497 * 17 16 15 40 40 H 1.09001 * 109.47268 * 299.99948 * 17 16 15 41 41 H 0.97004 * 119.99600 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7329 1.2435 5 6 1.3277 -2.0767 1.3427 6 6 1.4152 -2.8217 0.0365 7 6 1.1513 -4.1877 0.0510 8 9 0.8360 -4.7974 1.2146 9 6 1.2089 -4.9253 -1.1159 10 6 1.5315 -4.3012 -2.3062 11 6 1.7954 -2.9474 -2.3211 12 6 1.7396 -2.2031 -1.1492 13 6 2.0443 -0.7306 -1.2387 14 1 3.1226 -0.5908 -1.3166 15 7 1.3963 -0.1735 -2.4335 16 6 2.1113 1.0164 -2.9138 17 6 1.3382 1.6411 -4.0770 18 6 2.0714 2.8622 -4.5693 19 1 2.9940 3.1651 -4.0967 20 6 1.5617 3.5955 -5.6198 21 7 0.4354 3.2296 -6.1918 22 14 2.4709 5.1088 -6.2305 23 1 3.7032 5.3043 -5.4253 24 1 2.8369 4.9239 -7.6578 25 1 1.5957 6.3007 -6.0943 26 1 -0.3633 -1.0276 0.0096 27 1 -0.3633 0.5221 0.8852 28 1 -0.3634 0.5055 -0.8947 29 1 1.8388 -0.1385 2.1331 30 1 3.1208 -0.8969 1.1544 31 1 0.2799 -1.9062 1.5898 32 1 1.7898 -2.6739 2.1288 33 1 1.0026 -5.9852 -1.0979 34 1 1.5764 -4.8718 -3.2221 35 1 2.0470 -2.4613 -3.2522 36 1 1.3210 -0.8684 -3.1613 37 1 3.1073 0.7302 -3.2517 38 1 2.1966 1.7407 -2.1037 39 1 0.3422 1.9274 -3.7392 40 1 1.2528 0.9169 -4.8872 41 1 0.0770 3.7453 -6.9311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272150755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -38.741774 kcal Electronic energy + Delta-G solvation = -21583.845801 eV Core-core repulsion = 18376.920280 eV Total energy + Delta-G solvation = -3206.925522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.97291 -40.42204 -37.04751 -35.33428 -33.08111 -31.28989 -31.04212 -29.14977 -28.05299 -26.31475 -24.22715 -23.26448 -22.46672 -21.43141 -20.41371 -18.49505 -17.40776 -16.56837 -16.29796 -16.02969 -15.81881 -15.26350 -14.75256 -14.60272 -14.40935 -14.15985 -13.62542 -13.29186 -13.02792 -12.91338 -12.36791 -12.21965 -12.12552 -11.97241 -11.74335 -11.56626 -11.31591 -11.03093 -10.95751 -10.66784 -10.58048 -10.32940 -10.14962 -9.96558 -9.38927 -9.15819 -8.86525 -8.65869 -8.36110 -7.79468 -6.00789 -4.03340 1.08446 1.13670 3.30317 3.37916 3.41568 3.48105 4.11612 4.41496 4.48813 4.53546 4.66920 4.85789 4.93547 5.07571 5.12337 5.18386 5.32132 5.35458 5.41003 5.55018 5.70427 5.76684 5.85583 5.87763 5.90985 5.97795 6.09627 6.17466 6.23529 6.26533 6.32053 6.41128 6.50299 6.53574 6.82193 6.83806 6.96959 7.44458 7.70717 7.78842 7.93050 8.07252 8.42253 9.04294 9.60670 11.10569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.003818 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.901637 B = 7331.035253 C = 7907.309876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.079 4.079 6 C -0.100 4.100 7 C 0.091 3.909 8 F -0.142 7.142 9 C -0.159 4.159 10 C -0.092 4.092 11 C -0.128 4.128 12 C -0.037 4.037 13 C 0.128 3.872 14 H 0.055 0.945 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.027 3.973 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.337 0.663 37 H 0.015 0.985 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -14.569 13.305 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.072 3.928 8 F -0.121 7.121 9 C -0.178 4.178 10 C -0.110 4.110 11 C -0.146 4.146 12 C -0.038 4.038 13 C 0.018 3.982 14 H 0.072 0.928 15 N -0.314 5.314 16 C -0.063 4.063 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.712 -14.169 13.554 19.683 hybrid contribution 1.169 0.221 -0.735 1.398 sum 2.881 -13.948 12.819 19.162 Atomic orbital electron populations 1.21722 0.94134 1.01495 1.02016 1.21082 0.97358 0.99003 0.92354 0.90558 1.21610 0.99757 0.95282 0.98611 1.20432 1.02070 0.95969 0.93147 1.19572 1.02360 0.91731 0.96488 1.17712 1.02703 0.90798 0.81629 1.91458 1.90483 1.83233 1.46895 1.21021 1.04404 1.00547 0.91835 1.20884 0.98173 0.94574 0.97392 1.21256 1.00945 0.94149 0.98282 1.19610 0.96653 0.95800 0.91712 1.20371 0.96457 0.88085 0.93290 0.92769 1.60769 1.53562 1.09730 1.07292 1.22239 0.94751 0.90242 0.99060 1.19042 0.95989 0.94845 0.91150 1.21210 1.08258 1.10530 1.16004 0.92751 1.24995 0.94981 0.97712 0.96626 1.69986 1.19643 1.39663 1.23892 0.86552 0.79851 0.83067 0.78609 1.19781 1.21049 1.20980 0.93184 0.93995 0.90407 0.91107 0.91843 0.89909 0.90995 0.85021 0.85016 0.85253 0.84252 0.96624 0.92177 0.95613 0.96866 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.20 37.16 0.30 -1.59 16 2 C -0.08 -1.05 2.84 -90.59 -0.26 -1.31 16 3 H 0.08 1.07 7.61 -51.93 -0.39 0.68 16 4 C -0.11 -1.25 5.65 -26.70 -0.15 -1.40 16 5 C -0.08 -0.88 4.74 -28.05 -0.13 -1.01 16 6 C -0.10 -1.26 5.02 -104.55 -0.52 -1.79 16 7 C 0.09 1.12 7.22 -39.28 -0.28 0.83 16 8 F -0.14 -1.76 16.47 2.25 0.04 -1.72 16 9 C -0.16 -1.74 10.02 -39.61 -0.40 -2.13 16 10 C -0.09 -0.99 10.05 -39.70 -0.40 -1.39 16 11 C -0.13 -1.57 8.85 -39.43 -0.35 -1.92 16 12 C -0.04 -0.49 5.13 -104.62 -0.54 -1.03 16 13 C 0.13 1.82 2.22 -69.03 -0.15 1.67 16 14 H 0.05 0.79 7.84 -51.93 -0.41 0.39 16 15 N -0.68 -11.52 5.15 -108.13 -0.56 -12.08 16 16 C 0.07 1.31 5.38 -3.83 -0.02 1.29 16 17 C 0.03 0.69 5.28 -27.88 -0.15 0.55 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.69 5.54 -51.93 -0.29 0.40 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.28 7.40 -51.93 -0.38 0.89 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.08 0.91 6.79 -51.93 -0.35 0.56 16 32 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.54 6.54 -52.49 -0.34 1.20 16 36 H 0.34 5.52 6.11 -39.29 -0.24 5.28 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 1.22 7.48 -51.93 -0.39 0.83 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -29.57 325.04 -9.49 -39.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.13 Total: 1.89 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -3.46 Total: -22.56 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.18 Total: -38.04 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.57 -9.49 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272150755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.322 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds