Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.70951 * 2 1 4 4 C 1.53317 * 109.70466 * 120.51524 * 2 1 3 5 5 C 1.52740 * 108.33023 * 49.79066 * 4 2 1 6 6 C 1.50629 * 110.57536 * 51.11734 * 5 4 2 7 7 C 1.39137 * 117.74246 * 162.47984 * 6 5 4 8 8 F 1.35097 * 119.75622 * 359.71287 * 7 6 5 9 9 C 1.38163 * 120.48912 * 179.68556 * 7 6 5 10 10 C 1.38222 * 119.73863 * 0.02562 * 9 7 6 11 11 C 1.37940 * 119.80493 * 0.08485 * 10 9 7 12 12 C 1.37611 * 122.58645 * 342.35668 * 6 5 4 13 13 C 1.50644 * 122.56612 * 0.45452 * 12 6 5 14 14 H 1.09004 * 109.24753 * 102.69832 * 13 12 6 15 15 N 1.46894 * 109.25372 * 222.16179 * 13 12 6 16 16 C 1.46898 * 111.00120 * 206.08851 * 15 13 12 17 17 C 1.52999 * 109.47486 * 185.13850 * 16 15 13 18 18 C 1.50698 * 109.47406 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99724 * 359.73272 * 18 17 16 20 20 C 1.37875 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00261 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46864 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47236 * 119.99895 * 22 20 18 25 25 H 1.48500 * 109.47276 * 240.00304 * 22 20 18 26 26 H 1.08999 * 109.47221 * 180.53352 * 1 2 3 27 27 H 1.09004 * 109.46916 * 300.53239 * 1 2 3 28 28 H 1.08996 * 109.47480 * 60.53071 * 1 2 3 29 29 H 1.09001 * 109.68816 * 290.09475 * 4 2 1 30 30 H 1.08996 * 109.74754 * 169.52486 * 4 2 1 31 31 H 1.09000 * 109.25445 * 290.83679 * 5 4 2 32 32 H 1.08998 * 109.22456 * 171.38391 * 5 4 2 33 33 H 1.07994 * 120.12829 * 180.02562 * 9 7 6 34 34 H 1.08000 * 120.09757 * 180.11139 * 10 9 7 35 35 H 1.08002 * 119.70331 * 180.02562 * 11 10 9 36 36 H 1.00902 * 111.00047 * 330.04422 * 15 13 12 37 37 H 1.09001 * 109.47455 * 65.13679 * 16 15 13 38 38 H 1.08999 * 109.46992 * 305.13556 * 16 15 13 39 39 H 1.09001 * 109.46913 * 59.99497 * 17 16 15 40 40 H 1.09001 * 109.47268 * 299.99948 * 17 16 15 41 41 H 0.97004 * 119.99600 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7329 1.2435 5 6 1.3277 -2.0767 1.3427 6 6 1.4152 -2.8217 0.0365 7 6 1.1513 -4.1877 0.0510 8 9 0.8360 -4.7974 1.2146 9 6 1.2089 -4.9253 -1.1159 10 6 1.5315 -4.3012 -2.3062 11 6 1.7954 -2.9474 -2.3211 12 6 1.7396 -2.2031 -1.1492 13 6 2.0443 -0.7306 -1.2387 14 1 3.1226 -0.5908 -1.3166 15 7 1.3963 -0.1735 -2.4335 16 6 2.1113 1.0164 -2.9138 17 6 1.3382 1.6411 -4.0770 18 6 2.0714 2.8622 -4.5693 19 1 2.9940 3.1651 -4.0967 20 6 1.5617 3.5955 -5.6198 21 7 0.4354 3.2296 -6.1918 22 14 2.4709 5.1088 -6.2305 23 1 3.7032 5.3043 -5.4253 24 1 2.8369 4.9239 -7.6578 25 1 1.5957 6.3007 -6.0943 26 1 -0.3633 -1.0276 0.0096 27 1 -0.3633 0.5221 0.8852 28 1 -0.3634 0.5055 -0.8947 29 1 1.8388 -0.1385 2.1331 30 1 3.1208 -0.8969 1.1544 31 1 0.2799 -1.9062 1.5898 32 1 1.7898 -2.6739 2.1288 33 1 1.0026 -5.9852 -1.0979 34 1 1.5764 -4.8718 -3.2221 35 1 2.0470 -2.4613 -3.2522 36 1 1.3210 -0.8684 -3.1613 37 1 3.1073 0.7302 -3.2517 38 1 2.1966 1.7407 -2.1037 39 1 0.3422 1.9274 -3.7392 40 1 1.2528 0.9169 -4.8872 41 1 0.0770 3.7453 -6.9311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272150755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = -54.074237 kcal Electronic energy + Delta-G solvation = -21584.510667 eV Core-core repulsion = 18376.920280 eV Total energy + Delta-G solvation = -3207.590387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90180 -41.42528 -38.10905 -36.69636 -35.00110 -32.68258 -32.08489 -30.46232 -29.31917 -27.52758 -25.97042 -24.31032 -23.53177 -22.65023 -22.01520 -19.49271 -18.57800 -18.28833 -17.53925 -17.03424 -16.80626 -16.54234 -16.29586 -15.92206 -15.49158 -15.38269 -14.94553 -14.58528 -14.21494 -14.04331 -13.97146 -13.44528 -13.21113 -13.14832 -12.96234 -12.87330 -12.72425 -12.59499 -12.43114 -12.24795 -11.92901 -11.63190 -11.49317 -11.32749 -11.15095 -11.09400 -10.55824 -9.87519 -9.57718 -9.14986 -8.19234 -6.30303 0.15004 0.22872 1.40965 1.41412 1.54458 2.41002 2.55720 3.14607 3.15223 3.37769 3.57367 3.62474 3.96564 3.99845 4.09097 4.11264 4.24406 4.36156 4.44316 4.53470 4.54745 4.63523 4.76055 4.82728 4.87821 4.90632 5.01283 5.06972 5.10272 5.15287 5.24400 5.28679 5.35159 5.45381 5.46528 5.53818 5.64814 5.70161 5.81559 5.93006 6.15378 6.28356 6.53284 6.87535 7.39073 8.93015 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.003818 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.901637 B = 7331.035253 C = 7907.309876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 H 0.066 0.934 4 C -0.106 4.106 5 C -0.079 4.079 6 C -0.107 4.107 7 C 0.078 3.922 8 F -0.144 7.144 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.140 4.140 12 C -0.053 4.053 13 C 0.131 3.869 14 H 0.053 0.947 15 N -0.684 5.684 16 C 0.086 3.914 17 C 0.035 3.965 18 C -0.542 4.542 19 H 0.060 0.940 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.279 1.279 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.339 0.661 37 H 0.019 0.981 38 H 0.059 0.941 39 H -0.007 1.007 40 H -0.009 1.009 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -15.217 14.202 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.115 4.115 6 C -0.108 4.108 7 C 0.059 3.941 8 F -0.122 7.122 9 C -0.173 4.173 10 C -0.107 4.107 11 C -0.158 4.158 12 C -0.053 4.053 13 C 0.021 3.979 14 H 0.070 0.930 15 N -0.317 5.317 16 C -0.043 4.043 17 C -0.003 4.003 18 C -0.581 4.581 19 H 0.078 0.922 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.205 1.205 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.009 0.991 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.742 -14.831 14.470 20.901 hybrid contribution 0.803 0.340 -1.016 1.339 sum 3.544 -14.491 13.454 20.089 Atomic orbital electron populations 1.21626 0.94616 1.01248 1.01156 1.21100 0.96902 0.98745 0.93234 0.91540 1.21562 0.99885 0.95127 0.97832 1.20467 1.02293 0.95968 0.92805 1.19716 1.02128 0.92209 0.96773 1.17879 1.03279 0.90901 0.82088 1.91453 1.90560 1.83181 1.47036 1.21346 1.02974 1.01729 0.91235 1.21175 0.97003 0.93966 0.98515 1.21389 1.01352 0.95121 0.97980 1.19511 0.98280 0.95002 0.92549 1.20367 0.96108 0.89229 0.92152 0.92978 1.60671 1.53614 1.09176 1.08231 1.21813 0.94093 0.91381 0.96985 1.18879 0.94923 0.94185 0.92274 1.21641 1.08644 1.11431 1.16337 0.92187 1.25944 0.95780 1.01102 0.96795 1.70120 1.21299 1.41237 1.24504 0.85404 0.78786 0.78720 0.78153 1.18554 1.20376 1.20465 0.93106 0.92449 0.93554 0.89287 0.91350 0.89749 0.89810 0.82608 0.82371 0.85483 0.84030 0.96272 0.92222 0.98813 0.99110 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.20 71.98 0.59 -2.96 16 2 C -0.08 -2.10 2.84 -10.78 -0.03 -2.13 16 3 H 0.07 1.85 7.61 -2.39 -0.02 1.83 16 4 C -0.11 -2.13 5.65 30.61 0.17 -1.96 16 5 C -0.08 -1.60 4.74 29.74 0.14 -1.46 16 6 C -0.11 -2.55 5.02 -19.82 -0.10 -2.65 16 7 C 0.08 1.77 7.22 22.47 0.16 1.93 16 8 F -0.14 -3.29 16.47 44.97 0.74 -2.55 16 9 C -0.15 -3.00 10.02 22.25 0.22 -2.77 16 10 C -0.09 -1.72 10.05 22.20 0.22 -1.50 16 11 C -0.14 -3.33 8.85 22.37 0.20 -3.13 16 12 C -0.05 -1.36 5.13 -19.86 -0.10 -1.46 16 13 C 0.13 3.71 2.22 44.06 0.10 3.81 16 14 H 0.05 1.51 7.84 -2.38 -0.02 1.49 16 15 N -0.68 -23.71 5.15 -496.02 -2.55 -26.26 16 16 C 0.09 3.54 5.38 86.30 0.46 4.01 16 17 C 0.03 1.85 5.28 29.85 0.16 2.00 16 18 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 22 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H 0.05 1.37 5.54 -2.39 -0.01 1.36 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.05 1.56 7.40 -2.39 -0.02 1.54 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 31 H 0.08 1.70 6.79 -2.39 -0.02 1.68 16 32 H 0.08 1.52 7.85 -2.39 -0.02 1.50 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.13 3.02 6.54 -2.91 -0.02 3.00 16 36 H 0.34 11.43 6.11 -89.69 -0.55 10.88 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 2.45 7.48 -2.39 -0.02 2.43 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -63.98 325.04 3.87 -60.11 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.48 Total: 17.33 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.89 Total: -38.26 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -2.27 Total: -82.80 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.74 Total: -2.55 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.98 3.87 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272150755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.039 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds