Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47129 * 2 1 4 4 C 1.50698 * 109.47229 * 120.00102 * 2 1 3 5 5 C 1.38654 * 120.78761 * 65.39303 * 4 2 1 6 6 C 1.38200 * 119.15821 * 179.75291 * 5 4 2 7 7 N 1.31873 * 120.76809 * 0.53314 * 6 5 4 8 8 C 1.31874 * 121.71991 * 359.73964 * 7 6 5 9 9 C 1.38197 * 120.76743 * 359.97438 * 8 7 6 10 10 N 1.46498 * 109.46864 * 240.00511 * 2 1 3 11 11 C 1.46501 * 120.00008 * 306.06425 * 10 2 1 12 12 C 1.34773 * 120.00306 * 126.07470 * 10 2 1 13 13 O 1.21583 * 120.00119 * 359.97438 * 12 10 2 14 14 N 1.34777 * 120.00118 * 179.72284 * 12 10 2 15 15 C 1.46505 * 120.00126 * 180.26983 * 14 12 10 16 16 C 1.52996 * 109.47209 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47196 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99591 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00413 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99602 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00372 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47345 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47419 * 119.99985 * 21 19 17 24 24 H 1.48502 * 109.47275 * 239.99826 * 21 19 17 25 25 H 1.09001 * 109.47444 * 59.99890 * 1 2 3 26 26 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47069 * 299.99450 * 1 2 3 28 28 H 1.07999 * 120.41883 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.62032 * 180.24983 * 6 5 4 30 30 H 1.08005 * 119.61283 * 180.02562 * 8 7 6 31 31 H 1.08004 * 120.41690 * 179.97438 * 9 8 7 32 32 H 1.09002 * 109.47840 * 264.87999 * 11 10 2 33 33 H 1.09003 * 109.46807 * 24.88428 * 11 10 2 34 34 H 1.09008 * 109.47246 * 144.87624 * 11 10 2 35 35 H 0.96994 * 120.00198 * 0.27328 * 14 12 10 36 36 H 1.08995 * 109.47166 * 300.00347 * 15 14 12 37 37 H 1.09005 * 109.46879 * 59.99951 * 15 14 12 38 38 H 1.09003 * 109.47439 * 300.00096 * 16 15 14 39 39 H 1.09005 * 109.46987 * 60.00327 * 16 15 14 40 40 H 0.96998 * 119.99574 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.8013 -2.0655 1.4116 6 6 2.2817 -2.6842 2.5502 7 7 2.9431 -1.9989 3.4623 8 6 3.1764 -0.7081 3.3258 9 6 2.7316 -0.0234 2.2109 10 7 2.0182 -0.6905 -1.1962 11 6 1.5582 -2.0484 -1.4972 12 6 2.8908 -0.0766 -2.0197 13 8 3.2725 1.0504 -1.7702 14 7 3.3443 -0.7140 -3.1173 15 6 4.2974 -0.0490 -4.0093 16 6 4.6483 -0.9835 -5.1687 17 6 5.6291 -0.2996 -6.0860 18 1 5.9686 0.7013 -5.8638 19 6 6.0932 -0.9517 -7.2087 20 7 5.6801 -2.1707 -7.4789 21 14 7.3095 -0.1043 -8.3452 22 1 7.6137 1.2519 -7.8221 23 1 8.5607 -0.9010 -8.4138 24 1 6.7206 0.0103 -9.7037 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2567 -2.6313 0.6702 29 1 2.1095 -3.7402 2.6969 30 1 3.7222 -0.1803 4.0939 31 1 2.9255 1.0339 2.1051 32 1 2.2761 -2.7702 -1.1075 33 1 0.5867 -2.2145 -1.0316 34 1 1.4693 -2.1711 -2.5768 35 1 3.0396 -1.6131 -3.3166 36 1 3.8513 0.8651 -4.4011 37 1 5.2029 0.1973 -3.4548 38 1 5.0945 -1.8974 -4.7766 39 1 3.7429 -1.2302 -5.7234 40 1 6.0063 -2.6293 -8.2689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273024691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 5.299720 kcal Electronic energy + Delta-G solvation = -21081.629070 eV Core-core repulsion = 17896.533292 eV Total energy + Delta-G solvation = -3185.095777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76459 -39.62360 -36.62359 -34.85967 -33.37405 -32.53767 -31.40766 -30.40668 -29.17969 -27.23689 -24.99559 -24.13512 -23.56741 -21.80263 -20.88388 -19.59886 -18.02469 -17.05138 -16.66822 -16.25627 -16.05944 -15.54910 -15.40391 -14.53530 -14.32187 -14.15445 -14.03490 -13.77048 -13.59644 -13.39931 -12.77632 -12.57379 -12.53680 -12.31241 -12.18824 -11.72496 -11.30862 -11.16132 -11.05798 -10.62253 -10.34985 -9.98323 -9.81606 -9.70393 -9.55017 -9.32998 -9.25519 -8.80843 -8.49040 -8.26363 -6.10254 -4.12755 0.95476 1.01563 2.81517 3.28056 3.35730 3.41098 3.47074 3.65972 4.23254 4.28185 4.33460 4.46017 4.57197 4.85801 4.86616 4.91658 5.01713 5.04900 5.27079 5.31678 5.33909 5.45392 5.53187 5.55609 5.66208 5.75619 5.89781 6.12288 6.22688 6.37865 6.49654 6.52563 6.75344 6.96390 7.08942 7.54039 7.61521 7.78119 7.88900 8.21726 8.33209 8.88786 8.94862 9.52130 11.01500 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.003206 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.375683 B = 8730.628933 C = 8833.622678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.191 3.809 3 H 0.114 0.886 4 C -0.047 4.047 5 C -0.167 4.167 6 C 0.095 3.905 7 N -0.489 5.489 8 C 0.097 3.903 9 C -0.158 4.158 10 N -0.630 5.630 11 C 0.071 3.929 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.735 5.735 15 C 0.139 3.861 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -0.998 18.192 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.087 3.913 3 H 0.132 0.868 4 C -0.056 4.056 5 C -0.187 4.187 6 C -0.061 4.061 7 N -0.198 5.198 8 C -0.059 4.059 9 C -0.179 4.179 10 N -0.368 5.368 11 C -0.072 4.072 12 C 0.403 3.597 13 O -0.474 6.474 14 N -0.390 5.390 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.607 -0.727 18.932 22.219 hybrid contribution 0.239 0.174 -1.587 1.614 sum -11.368 -0.553 17.346 20.746 Atomic orbital electron populations 1.22157 0.93733 1.02638 1.03022 1.19757 0.93953 0.97267 0.80343 0.86821 1.20699 0.95046 0.94386 0.95489 1.22218 1.01981 0.95108 0.99385 1.22746 0.93550 1.00062 0.89762 1.67666 1.13183 1.08648 1.30281 1.22754 0.96461 0.90283 0.96437 1.22110 0.98871 1.01844 0.95048 1.47015 1.48195 1.16535 1.25097 1.21876 1.00054 0.83475 1.01795 1.15979 0.79064 0.84397 0.80210 1.90868 1.62623 1.18369 1.75511 1.45665 1.48652 1.19528 1.25109 1.21618 0.89733 0.96609 0.90441 1.19326 0.97161 0.94643 0.91321 1.21087 1.25588 1.01470 1.07706 0.92153 1.24998 0.96645 0.94900 0.97787 1.69968 1.44220 1.12014 1.27147 0.86452 0.80847 0.79761 0.80485 1.19555 1.20934 1.20945 0.91234 0.91989 0.91168 0.84530 0.82857 0.82742 0.84554 0.92556 0.90523 0.91036 0.77175 0.92710 0.92765 0.96006 0.95993 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.94 37.16 0.33 -0.98 16 2 C 0.19 2.15 2.97 -69.09 -0.21 1.94 16 3 H 0.11 1.49 6.73 -51.93 -0.35 1.14 16 4 C -0.05 -0.50 4.98 -104.32 -0.52 -1.02 16 5 C -0.17 -1.58 8.40 -39.44 -0.33 -1.91 16 6 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 7 N -0.49 -5.66 10.36 -13.25 -0.14 -5.80 16 8 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 9 C -0.16 -1.66 9.76 -39.45 -0.39 -2.04 16 10 N -0.63 -8.17 2.75 -181.01 -0.50 -8.66 16 11 C 0.07 0.67 7.89 59.85 0.47 1.14 16 12 C 0.70 12.42 8.28 -86.92 -0.72 11.70 16 13 O -0.60 -12.66 15.68 5.29 0.08 -12.58 16 14 N -0.74 -13.22 5.42 -65.23 -0.35 -13.57 16 15 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.43 6.15 -51.93 -0.32 0.11 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.14 1.01 5.08 -52.49 -0.27 0.74 16 29 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.14 1.25 8.02 -52.48 -0.42 0.83 16 32 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 33 H 0.08 0.52 5.14 -51.93 -0.27 0.25 16 34 H 0.07 0.67 6.65 -51.92 -0.35 0.32 16 35 H 0.39 6.16 6.32 -40.82 -0.26 5.90 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -33.59 329.83 -8.08 -41.67 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.54 Total: 2.61 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.32 Total: 0.34 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.25 Total: -53.37 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.59 -8.08 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273024691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds