Wall clock time and date at job start Mon Mar 30 2020 02:22:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47129 * 2 1
4 4 C 1.50698 * 109.47229 * 120.00102 * 2 1 3
5 5 C 1.38654 * 120.78761 * 65.39303 * 4 2 1
6 6 C 1.38200 * 119.15821 * 179.75291 * 5 4 2
7 7 N 1.31873 * 120.76809 * 0.53314 * 6 5 4
8 8 C 1.31874 * 121.71991 * 359.73964 * 7 6 5
9 9 C 1.38197 * 120.76743 * 359.97438 * 8 7 6
10 10 N 1.46498 * 109.46864 * 240.00511 * 2 1 3
11 11 C 1.46501 * 120.00008 * 306.06425 * 10 2 1
12 12 C 1.34773 * 120.00306 * 126.07470 * 10 2 1
13 13 O 1.21583 * 120.00119 * 359.97438 * 12 10 2
14 14 N 1.34777 * 120.00118 * 179.72284 * 12 10 2
15 15 C 1.46505 * 120.00126 * 180.26983 * 14 12 10
16 16 C 1.52996 * 109.47209 * 179.97438 * 15 14 12
17 17 C 1.50701 * 109.47196 * 180.02562 * 16 15 14
18 18 H 1.08003 * 119.99591 * 0.02562 * 17 16 15
19 19 C 1.37876 * 120.00413 * 180.02562 * 17 16 15
20 20 N 1.31520 * 119.99602 * 359.97438 * 19 17 16
21 21 Si 1.86791 * 120.00372 * 180.02562 * 19 17 16
22 22 H 1.48505 * 109.47345 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47419 * 119.99985 * 21 19 17
24 24 H 1.48502 * 109.47275 * 239.99826 * 21 19 17
25 25 H 1.09001 * 109.47444 * 59.99890 * 1 2 3
26 26 H 1.09000 * 109.47129 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47069 * 299.99450 * 1 2 3
28 28 H 1.07999 * 120.41883 * 0.02562 * 5 4 2
29 29 H 1.08000 * 119.62032 * 180.24983 * 6 5 4
30 30 H 1.08005 * 119.61283 * 180.02562 * 8 7 6
31 31 H 1.08004 * 120.41690 * 179.97438 * 9 8 7
32 32 H 1.09002 * 109.47840 * 264.87999 * 11 10 2
33 33 H 1.09003 * 109.46807 * 24.88428 * 11 10 2
34 34 H 1.09008 * 109.47246 * 144.87624 * 11 10 2
35 35 H 0.96994 * 120.00198 * 0.27328 * 14 12 10
36 36 H 1.08995 * 109.47166 * 300.00347 * 15 14 12
37 37 H 1.09005 * 109.46879 * 59.99951 * 15 14 12
38 38 H 1.09003 * 109.47439 * 300.00096 * 16 15 14
39 39 H 1.09005 * 109.46987 * 60.00327 * 16 15 14
40 40 H 0.96998 * 119.99574 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2304
5 6 1.8013 -2.0655 1.4116
6 6 2.2817 -2.6842 2.5502
7 7 2.9431 -1.9989 3.4623
8 6 3.1764 -0.7081 3.3258
9 6 2.7316 -0.0234 2.2109
10 7 2.0182 -0.6905 -1.1962
11 6 1.5582 -2.0484 -1.4972
12 6 2.8908 -0.0766 -2.0197
13 8 3.2725 1.0504 -1.7702
14 7 3.3443 -0.7140 -3.1173
15 6 4.2974 -0.0490 -4.0093
16 6 4.6483 -0.9835 -5.1687
17 6 5.6291 -0.2996 -6.0860
18 1 5.9686 0.7013 -5.8638
19 6 6.0932 -0.9517 -7.2087
20 7 5.6801 -2.1707 -7.4789
21 14 7.3095 -0.1043 -8.3452
22 1 7.6137 1.2519 -7.8221
23 1 8.5607 -0.9010 -8.4138
24 1 6.7206 0.0103 -9.7037
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.2567 -2.6313 0.6702
29 1 2.1095 -3.7402 2.6969
30 1 3.7222 -0.1803 4.0939
31 1 2.9255 1.0339 2.1051
32 1 2.2761 -2.7702 -1.1075
33 1 0.5867 -2.2145 -1.0316
34 1 1.4693 -2.1711 -2.5768
35 1 3.0396 -1.6131 -3.3166
36 1 3.8513 0.8651 -4.4011
37 1 5.2029 0.1973 -3.4548
38 1 5.0945 -1.8974 -4.7766
39 1 3.7429 -1.2302 -5.7234
40 1 6.0063 -2.6293 -8.2689
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273024691.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:22:08
Heat of formation + Delta-G solvation = 5.299720 kcal
Electronic energy + Delta-G solvation = -21081.629070 eV
Core-core repulsion = 17896.533292 eV
Total energy + Delta-G solvation = -3185.095777 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.153 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.76459 -39.62360 -36.62359 -34.85967 -33.37405 -32.53767 -31.40766 -30.40668
-29.17969 -27.23689 -24.99559 -24.13512 -23.56741 -21.80263 -20.88388 -19.59886
-18.02469 -17.05138 -16.66822 -16.25627 -16.05944 -15.54910 -15.40391 -14.53530
-14.32187 -14.15445 -14.03490 -13.77048 -13.59644 -13.39931 -12.77632 -12.57379
-12.53680 -12.31241 -12.18824 -11.72496 -11.30862 -11.16132 -11.05798 -10.62253
-10.34985 -9.98323 -9.81606 -9.70393 -9.55017 -9.32998 -9.25519 -8.80843
-8.49040 -8.26363 -6.10254 -4.12755 0.95476 1.01563 2.81517 3.28056
3.35730 3.41098 3.47074 3.65972 4.23254 4.28185 4.33460 4.46017
4.57197 4.85801 4.86616 4.91658 5.01713 5.04900 5.27079 5.31678
5.33909 5.45392 5.53187 5.55609 5.66208 5.75619 5.89781 6.12288
6.22688 6.37865 6.49654 6.52563 6.75344 6.96390 7.08942 7.54039
7.61521 7.78119 7.88900 8.21726 8.33209 8.88786 8.94862 9.52130
11.01500
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.028848 B = 0.003206 C = 0.003169
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.375683 B = 8730.628933 C = 8833.622678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.191 3.809
3 H 0.114 0.886
4 C -0.047 4.047
5 C -0.167 4.167
6 C 0.095 3.905
7 N -0.489 5.489
8 C 0.097 3.903
9 C -0.158 4.158
10 N -0.630 5.630
11 C 0.071 3.929
12 C 0.702 3.298
13 O -0.595 6.595
14 N -0.735 5.735
15 C 0.139 3.861
16 C 0.013 3.987
17 C -0.520 4.520
18 H 0.060 0.940
19 C 0.058 3.942
20 N -0.894 5.894
21 Si 0.897 3.103
22 H -0.271 1.271
23 H -0.283 1.283
24 H -0.283 1.283
25 H 0.069 0.931
26 H 0.061 0.939
27 H 0.069 0.931
28 H 0.137 0.863
29 H 0.154 0.846
30 H 0.155 0.845
31 H 0.137 0.863
32 H 0.056 0.944
33 H 0.076 0.924
34 H 0.071 0.929
35 H 0.394 0.606
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.022 0.978
39 H 0.022 0.978
40 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.245 -0.998 18.192 21.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.087 3.913
3 H 0.132 0.868
4 C -0.056 4.056
5 C -0.187 4.187
6 C -0.061 4.061
7 N -0.198 5.198
8 C -0.059 4.059
9 C -0.179 4.179
10 N -0.368 5.368
11 C -0.072 4.072
12 C 0.403 3.597
13 O -0.474 6.474
14 N -0.390 5.390
15 C 0.016 3.984
16 C -0.025 4.025
17 C -0.559 4.559
18 H 0.078 0.922
19 C -0.143 4.143
20 N -0.533 5.533
21 Si 0.725 3.275
22 H -0.196 1.196
23 H -0.209 1.209
24 H -0.209 1.209
25 H 0.088 0.912
26 H 0.080 0.920
27 H 0.088 0.912
28 H 0.155 0.845
29 H 0.171 0.829
30 H 0.173 0.827
31 H 0.154 0.846
32 H 0.074 0.926
33 H 0.095 0.905
34 H 0.090 0.910
35 H 0.228 0.772
36 H 0.073 0.927
37 H 0.072 0.928
38 H 0.040 0.960
39 H 0.040 0.960
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -11.607 -0.727 18.932 22.219
hybrid contribution 0.239 0.174 -1.587 1.614
sum -11.368 -0.553 17.346 20.746
Atomic orbital electron populations
1.22157 0.93733 1.02638 1.03022 1.19757 0.93953 0.97267 0.80343
0.86821 1.20699 0.95046 0.94386 0.95489 1.22218 1.01981 0.95108
0.99385 1.22746 0.93550 1.00062 0.89762 1.67666 1.13183 1.08648
1.30281 1.22754 0.96461 0.90283 0.96437 1.22110 0.98871 1.01844
0.95048 1.47015 1.48195 1.16535 1.25097 1.21876 1.00054 0.83475
1.01795 1.15979 0.79064 0.84397 0.80210 1.90868 1.62623 1.18369
1.75511 1.45665 1.48652 1.19528 1.25109 1.21618 0.89733 0.96609
0.90441 1.19326 0.97161 0.94643 0.91321 1.21087 1.25588 1.01470
1.07706 0.92153 1.24998 0.96645 0.94900 0.97787 1.69968 1.44220
1.12014 1.27147 0.86452 0.80847 0.79761 0.80485 1.19555 1.20934
1.20945 0.91234 0.91989 0.91168 0.84530 0.82857 0.82742 0.84554
0.92556 0.90523 0.91036 0.77175 0.92710 0.92765 0.96006 0.95993
0.92916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.31 8.94 37.16 0.33 -0.98 16
2 C 0.19 2.15 2.97 -69.09 -0.21 1.94 16
3 H 0.11 1.49 6.73 -51.93 -0.35 1.14 16
4 C -0.05 -0.50 4.98 -104.32 -0.52 -1.02 16
5 C -0.17 -1.58 8.40 -39.44 -0.33 -1.91 16
6 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16
7 N -0.49 -5.66 10.36 -13.25 -0.14 -5.80 16
8 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16
9 C -0.16 -1.66 9.76 -39.45 -0.39 -2.04 16
10 N -0.63 -8.17 2.75 -181.01 -0.50 -8.66 16
11 C 0.07 0.67 7.89 59.85 0.47 1.14 16
12 C 0.70 12.42 8.28 -86.92 -0.72 11.70 16
13 O -0.60 -12.66 15.68 5.29 0.08 -12.58 16
14 N -0.74 -13.22 5.42 -65.23 -0.35 -13.57 16
15 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16
16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16
17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16
18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16
19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
20 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16
21 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16
22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
26 H 0.06 0.43 6.15 -51.93 -0.32 0.11 16
27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.14 1.01 5.08 -52.49 -0.27 0.74 16
29 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16
30 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16
31 H 0.14 1.25 8.02 -52.48 -0.42 0.83 16
32 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16
33 H 0.08 0.52 5.14 -51.93 -0.27 0.25 16
34 H 0.07 0.67 6.65 -51.92 -0.35 0.32 16
35 H 0.39 6.16 6.32 -40.82 -0.26 5.90 16
36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
LS Contribution 329.83 15.07 4.97 4.97
Total: -1.00 -33.59 329.83 -8.08 -41.67
By element:
Atomic # 1 Polarization: 8.15 SS G_CDS: -5.54 Total: 2.61 kcal
Atomic # 6 Polarization: 2.66 SS G_CDS: -2.32 Total: 0.34 kcal
Atomic # 7 Polarization: -53.12 SS G_CDS: -0.25 Total: -53.37 kcal
Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -33.59 -8.08 -41.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273024691.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal
(2) G-P(sol) polarization free energy of solvation -33.587 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.384 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds