Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.01197 * 2 1 4 4 C 1.51137 * 109.94900 * 121.23490 * 2 1 3 5 5 C 1.34209 * 127.60010 * 288.71632 * 4 2 1 6 6 C 1.41056 * 107.28394 * 179.67217 * 5 4 2 7 7 C 1.34963 * 107.46796 * 0.09081 * 6 5 4 8 8 N 1.36096 * 108.26736 * 0.14403 * 7 6 5 9 9 C 1.46704 * 126.92951 * 179.37984 * 8 7 6 10 10 C 1.53706 * 109.21189 * 161.37607 * 9 8 7 11 11 N 1.47060 * 109.02790 * 46.47906 * 10 9 8 12 12 C 1.34777 * 120.98099 * 115.91067 * 11 10 9 13 13 O 1.21581 * 120.00209 * 4.63864 * 12 11 10 14 14 N 1.34775 * 119.99744 * 184.63813 * 12 11 10 15 15 C 1.46505 * 119.99999 * 175.18093 * 14 12 11 16 16 C 1.53001 * 109.47141 * 179.72748 * 15 14 12 17 17 C 1.50700 * 109.47212 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99488 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00260 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47306 * 89.99842 * 21 19 17 23 23 H 1.48500 * 109.47215 * 209.99884 * 21 19 17 24 24 H 1.48496 * 109.47065 * 329.99357 * 21 19 17 25 25 H 1.08997 * 109.47338 * 181.23323 * 1 2 3 26 26 H 1.09000 * 109.46908 * 301.23930 * 1 2 3 27 27 H 1.09004 * 109.46360 * 61.23048 * 1 2 3 28 28 H 1.08001 * 126.35462 * 359.64596 * 5 4 2 29 29 H 1.07999 * 126.26428 * 180.09554 * 6 5 4 30 30 H 1.08002 * 125.86686 * 180.16988 * 7 6 5 31 31 H 1.08994 * 109.51500 * 281.42851 * 9 8 7 32 32 H 1.09001 * 109.51062 * 41.57569 * 9 8 7 33 33 H 1.09000 * 109.63329 * 286.62092 * 10 9 8 34 34 H 1.09000 * 109.63667 * 166.34711 * 10 9 8 35 35 H 0.96999 * 120.00274 * 354.90181 * 14 12 11 36 36 H 1.08997 * 109.46568 * 299.72075 * 15 14 12 37 37 H 1.08997 * 109.47063 * 59.72414 * 15 14 12 38 38 H 1.09003 * 109.46837 * 299.99633 * 16 15 14 39 39 H 1.09003 * 109.47414 * 59.99403 * 16 15 14 40 40 H 0.96994 * 120.00123 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0457 -0.7367 1.2148 5 6 2.0044 -0.3351 2.4947 6 6 2.5965 -1.3521 3.2723 7 6 2.9781 -2.3355 2.4305 8 7 2.6478 -1.9645 1.1634 9 6 2.8884 -2.7240 -0.0684 10 6 1.9720 -2.1882 -1.1801 11 7 2.0332 -0.7189 -1.1853 12 6 2.5295 -0.0490 -2.2443 13 8 2.8566 -0.6535 -3.2471 14 7 2.6631 1.2911 -2.1915 15 6 3.2995 2.0080 -3.2994 16 6 3.3183 3.5069 -2.9930 17 6 3.9723 4.2445 -4.1330 18 1 4.3383 3.6986 -4.9899 19 6 4.1034 5.6160 -4.0818 20 7 3.6573 6.2807 -3.0384 21 14 4.9147 6.5300 -5.4944 22 1 3.8842 6.9145 -6.4920 23 1 5.5816 7.7513 -4.9758 24 1 5.9235 5.6509 -6.1384 25 1 -0.3634 -1.0274 0.0221 26 1 -0.3633 0.5330 0.8787 27 1 -0.3632 0.4946 -0.9009 28 1 1.5942 0.5944 2.8611 29 1 2.7216 -1.3450 4.3450 30 1 3.4620 -3.2586 2.7137 31 1 3.9305 -2.6122 -0.3675 32 1 2.6697 -3.7777 0.1050 33 1 0.9467 -2.5089 -0.9958 34 1 2.3053 -2.5697 -2.1452 35 1 2.3344 1.7814 -1.4218 36 1 4.3213 1.6499 -3.4245 37 1 2.7377 1.8316 -4.2166 38 1 2.2964 3.8650 -2.8678 39 1 3.8801 3.6833 -2.0757 40 1 3.7492 7.2457 -3.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273106335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = 25.642081 kcal Electronic energy + Delta-G solvation = -21556.397634 eV Core-core repulsion = 18372.183968 eV Total energy + Delta-G solvation = -3184.213666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71988 -39.70209 -36.36783 -35.03265 -33.89333 -32.75303 -30.97774 -29.76704 -28.37426 -27.97188 -24.90801 -23.70006 -23.19881 -21.10113 -20.71499 -20.09499 -18.49906 -17.72434 -17.43637 -16.36158 -16.10177 -15.48160 -15.14391 -14.53041 -14.35080 -14.11665 -13.86711 -13.63031 -13.58867 -13.15032 -12.83560 -12.46626 -12.30305 -12.25466 -12.13178 -11.94251 -11.58392 -11.45354 -11.14399 -11.03542 -10.63197 -10.33972 -10.00008 -9.57368 -9.27166 -8.97134 -8.66336 -8.48739 -8.28579 -8.11119 -6.08779 -4.11594 2.13725 2.45539 2.94892 3.00989 3.30081 3.36254 3.40524 3.41017 4.10671 4.34567 4.39196 4.45292 4.75030 4.78322 4.93428 5.02940 5.06571 5.28368 5.39848 5.46687 5.50831 5.53992 5.57207 5.66231 5.98019 6.13078 6.18181 6.26469 6.37309 6.40025 6.74684 6.89898 6.93434 7.05374 7.11685 7.28131 7.54467 7.62447 7.89832 8.19111 8.31367 8.84148 8.94772 9.53202 11.02894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.003716 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.828306 B = 7533.243589 C = 8010.240518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.208 3.792 3 H 0.105 0.895 4 C 0.009 3.991 5 C -0.185 4.185 6 C -0.202 4.202 7 C -0.012 4.012 8 N -0.442 5.442 9 C 0.089 3.911 10 C 0.120 3.880 11 N -0.637 5.637 12 C 0.707 3.293 13 O -0.593 6.593 14 N -0.735 5.735 15 C 0.139 3.861 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 -17.190 11.633 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.103 3.897 3 H 0.122 0.878 4 C -0.103 4.103 5 C -0.210 4.210 6 C -0.227 4.227 7 C -0.142 4.142 8 N -0.118 5.118 9 C -0.034 4.034 10 C -0.005 4.005 11 N -0.376 5.376 12 C 0.409 3.591 13 O -0.472 6.472 14 N -0.390 5.390 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.349 -17.634 10.584 21.251 hybrid contribution 0.356 0.763 -0.138 0.853 sum -4.993 -16.871 10.446 20.462 Atomic orbital electron populations 1.22129 0.93409 1.02744 1.03114 1.19894 0.94323 0.95337 0.80110 0.87782 1.20404 1.05407 0.88548 0.95908 1.20457 1.07996 1.01158 0.91393 1.20889 1.07406 0.95492 0.98924 1.21722 1.07989 1.01760 0.82758 1.44054 1.45913 1.15608 1.06232 1.22467 1.01698 0.95972 0.83245 1.21685 0.99248 0.79993 0.99551 1.47476 1.67080 1.05932 1.17129 1.15894 0.78205 0.82538 0.82456 1.90878 1.57503 1.67978 1.30830 1.45698 1.63981 1.04660 1.24648 1.21639 0.95831 0.93972 0.86935 1.19328 0.97926 0.87274 0.97937 1.21035 1.38971 0.91895 1.04074 0.92227 1.24988 0.95515 0.97673 0.96067 1.69955 1.46470 1.07829 1.29011 0.86510 0.79605 0.79237 0.82195 1.20558 1.21171 1.19734 0.92247 0.90626 0.91361 0.84461 0.84697 0.82330 0.89793 0.88667 0.90643 0.86761 0.77163 0.92809 0.92561 0.95917 0.95956 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.43 37.16 0.35 -1.20 16 2 C 0.21 2.48 3.17 -68.33 -0.22 2.27 16 3 H 0.10 1.27 5.88 -51.93 -0.31 0.97 16 4 C 0.01 0.11 5.96 -81.56 -0.49 -0.37 16 5 C -0.19 -2.17 10.81 -39.93 -0.43 -2.60 16 6 C -0.20 -2.21 10.87 -39.68 -0.43 -2.64 16 7 C -0.01 -0.13 11.49 -16.82 -0.19 -0.32 16 8 N -0.44 -4.99 3.15 -111.89 -0.35 -5.34 16 9 C 0.09 0.84 7.14 -3.56 -0.03 0.81 16 10 C 0.12 1.30 6.32 -3.37 -0.02 1.28 16 11 N -0.64 -8.73 2.62 -171.25 -0.45 -9.18 16 12 C 0.71 12.60 8.31 -86.92 -0.72 11.88 16 13 O -0.59 -12.51 15.79 5.29 0.08 -12.43 16 14 N -0.74 -13.38 5.46 -65.22 -0.36 -13.74 16 15 C 0.14 3.00 5.62 -4.04 -0.02 2.98 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 H 0.06 0.57 7.50 -51.93 -0.39 0.18 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.70 7.48 -51.93 -0.39 0.31 16 34 H 0.11 1.33 7.01 -51.93 -0.36 0.96 16 35 H 0.39 6.36 6.07 -40.82 -0.25 6.12 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -32.91 329.24 -9.04 -41.95 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.89 Total: 3.74 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.75 Total: -0.97 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.42 Total: -53.63 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.91 -9.04 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273106335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.589 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds