Wall clock time and date at job start Mon Mar 30 2020 02:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47336 * 2 1 4 4 C 1.50694 * 109.47329 * 120.00027 * 2 1 3 5 5 C 1.38678 * 120.41611 * 68.08421 * 4 2 1 6 6 C 1.38628 * 118.41933 * 179.78275 * 5 4 2 7 7 C 1.38226 * 119.16030 * 0.51465 * 6 5 4 8 8 N 1.31853 * 120.76280 * 359.71810 * 7 6 5 9 9 C 1.31883 * 121.72682 * 0.02562 * 8 7 6 10 10 N 1.46501 * 109.46890 * 240.00557 * 2 1 3 11 11 C 1.46501 * 119.99913 * 305.64097 * 10 2 1 12 12 C 1.34774 * 120.00107 * 125.64757 * 10 2 1 13 13 O 1.21589 * 120.00375 * 359.97438 * 12 10 2 14 14 N 1.34784 * 119.99925 * 180.27380 * 12 10 2 15 15 C 1.46497 * 119.99779 * 179.72295 * 14 12 10 16 16 C 1.53004 * 109.46866 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47033 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00067 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00338 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99705 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47340 * 90.00368 * 21 19 17 23 23 H 1.48505 * 109.47115 * 210.00093 * 21 19 17 24 24 H 1.48502 * 109.47327 * 330.00090 * 21 19 17 25 25 H 1.08991 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47024 * 299.99822 * 1 2 3 27 27 H 1.09002 * 109.46817 * 59.99263 * 1 2 3 28 28 H 1.07995 * 120.78989 * 0.02562 * 5 4 2 29 29 H 1.08001 * 120.41666 * 180.21211 * 6 5 4 30 30 H 1.08003 * 119.61406 * 179.75165 * 7 6 5 31 31 H 1.08001 * 119.61466 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47392 * 267.02444 * 11 10 2 33 33 H 1.09005 * 109.47072 * 27.02403 * 11 10 2 34 34 H 1.08999 * 109.46825 * 147.02432 * 11 10 2 35 35 H 0.96997 * 119.99735 * 359.72008 * 14 12 10 36 36 H 1.09004 * 109.47247 * 299.99914 * 15 14 12 37 37 H 1.08996 * 109.47279 * 60.00118 * 15 14 12 38 38 H 1.08997 * 109.46922 * 299.99780 * 16 15 14 39 39 H 1.08996 * 109.47003 * 60.00038 * 16 15 14 40 40 H 0.97000 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.8456 -2.0766 1.3778 6 6 2.3285 -2.6887 2.5240 7 6 2.9660 -1.9205 3.4802 8 7 3.1216 -0.6225 3.3086 9 6 2.6796 -0.0078 2.2287 10 7 2.0183 -0.6905 -1.1963 11 6 1.5654 -2.0519 -1.4923 12 6 2.8842 -0.0734 -2.0243 13 8 3.2599 1.0567 -1.7789 14 7 3.3292 -0.7066 -3.1278 15 6 4.2657 -0.0335 -4.0311 16 6 4.6097 -0.9646 -5.1954 17 6 5.5736 -0.2724 -6.1243 18 1 5.9071 0.7313 -5.9063 19 6 6.0288 -0.9202 -7.2531 20 7 6.8696 -0.3160 -8.0640 21 14 5.4513 -2.6561 -7.6305 22 1 4.2219 -2.5992 -8.4615 23 1 6.5152 -3.3820 -8.3699 24 1 5.1578 -3.3674 -6.3604 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.3395 -2.6507 0.6158 29 1 2.2038 -3.7514 2.6704 30 1 3.3415 -2.3891 4.3778 31 1 2.8252 1.0572 2.1236 32 1 2.2695 -2.7690 -1.0701 33 1 0.5796 -2.2101 -1.0549 34 1 1.5102 -2.1897 -2.5722 35 1 3.0293 -1.6080 -3.3238 36 1 3.8075 0.8773 -4.4168 37 1 5.1760 0.2198 -3.4878 38 1 5.0681 -1.8750 -4.8093 39 1 3.6995 -1.2183 -5.7389 40 1 7.1902 -0.7719 -8.8579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273153821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:54 Heat of formation + Delta-G solvation = 11.229627 kcal Electronic energy + Delta-G solvation = -21151.533440 eV Core-core repulsion = 17966.694802 eV Total energy + Delta-G solvation = -3184.838637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83506 -39.68060 -36.63836 -34.97364 -33.24263 -32.47658 -32.19163 -30.17470 -29.46947 -27.35946 -25.09030 -24.08457 -23.68848 -21.70784 -20.78909 -19.58759 -18.05788 -17.35722 -16.97723 -16.49935 -16.28629 -15.70880 -15.15674 -14.44063 -14.27197 -14.12227 -14.08702 -13.86435 -13.58382 -13.40050 -12.94690 -12.65187 -12.60690 -12.56374 -12.23798 -12.04183 -11.46234 -11.24249 -11.21019 -10.40379 -10.26807 -10.06731 -9.97992 -9.85147 -9.66657 -9.33380 -9.23472 -8.85076 -8.62937 -8.38191 -6.11309 -4.11349 0.84257 1.03693 2.74340 3.24019 3.31506 3.32885 3.41261 3.60776 4.16566 4.21315 4.36955 4.45143 4.55434 4.71280 4.75087 4.80134 4.97520 5.00285 5.21491 5.22305 5.24159 5.39130 5.46259 5.51911 5.65275 5.80819 5.86946 5.97121 6.06747 6.23926 6.43260 6.45807 6.57398 6.79162 6.95772 7.21710 7.24291 7.66819 7.74579 8.17461 8.44768 8.83283 8.93650 9.48709 11.01801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.003450 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.034142 B = 8113.409007 C = 8230.436001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.197 3.803 3 H 0.115 0.885 4 C -0.142 4.142 5 C -0.072 4.072 6 C -0.175 4.175 7 C 0.094 3.906 8 N -0.484 5.484 9 C 0.113 3.887 10 N -0.631 5.631 11 C 0.071 3.929 12 C 0.703 3.297 13 O -0.590 6.590 14 N -0.740 5.740 15 C 0.147 3.853 16 C -0.021 4.021 17 C -0.522 4.522 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.391 0.609 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -7.277 20.069 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.092 3.908 3 H 0.132 0.868 4 C -0.146 4.146 5 C -0.098 4.098 6 C -0.194 4.194 7 C -0.063 4.063 8 N -0.192 5.192 9 C -0.044 4.044 10 N -0.369 5.369 11 C -0.073 4.073 12 C 0.404 3.596 13 O -0.468 6.468 14 N -0.394 5.394 15 C 0.024 3.976 16 C -0.059 4.059 17 C -0.560 4.560 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.514 -5.959 20.676 25.955 hybrid contribution -0.740 -2.088 -1.125 2.484 sum -15.254 -8.047 19.550 26.070 Atomic orbital electron populations 1.22157 0.93889 1.02442 1.03025 1.19662 0.93764 0.97265 0.80101 0.86753 1.21270 1.00357 0.95206 0.97723 1.21724 0.96782 0.94282 0.97028 1.22144 1.00553 1.01429 0.95309 1.22786 0.95211 0.89726 0.98590 1.67724 1.17655 1.11143 1.22703 1.22734 0.92542 1.00538 0.88621 1.47042 1.48518 1.16103 1.25200 1.21881 1.00094 0.83582 1.01714 1.15951 0.79062 0.84432 0.80131 1.90892 1.62366 1.17957 1.75603 1.45660 1.49991 1.19214 1.24570 1.21399 0.90583 0.96069 0.89529 1.19790 0.97054 0.95731 0.93304 1.20915 1.25831 1.02975 1.06317 0.90555 1.24997 0.94570 0.97902 0.95812 1.69901 1.32170 1.37846 1.13750 0.86752 0.78595 0.85041 0.78670 1.20232 1.21262 1.19147 0.92219 0.91115 0.91311 0.84489 0.84840 0.82898 0.82571 0.92675 0.90534 0.91093 0.77409 0.92075 0.92113 0.96100 0.96517 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.96 37.16 0.33 -0.91 16 2 C 0.20 2.12 2.96 -69.08 -0.20 1.92 16 3 H 0.11 1.45 6.69 -51.93 -0.35 1.10 16 4 C -0.14 -1.48 4.96 -104.49 -0.52 -2.00 16 5 C -0.07 -0.63 8.48 -39.27 -0.33 -0.97 16 6 C -0.17 -1.42 10.11 -39.44 -0.40 -1.82 16 7 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 8 N -0.48 -5.74 10.36 -13.25 -0.14 -5.88 16 9 C 0.11 1.28 10.83 -17.55 -0.19 1.09 16 10 N -0.63 -7.73 2.75 -181.00 -0.50 -8.23 16 11 C 0.07 0.60 7.92 59.85 0.47 1.07 16 12 C 0.70 11.93 8.28 -86.91 -0.72 11.21 16 13 O -0.59 -12.29 15.68 5.29 0.08 -12.21 16 14 N -0.74 -12.52 5.42 -65.22 -0.35 -12.87 16 15 C 0.15 3.05 5.61 -4.04 -0.02 3.03 16 16 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 17 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 18 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 21 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 25 H 0.06 0.39 6.28 -51.93 -0.33 0.06 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 0.93 4.89 -52.49 -0.26 0.67 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.16 1.59 7.97 -52.49 -0.42 1.17 16 32 H 0.05 0.44 7.19 -51.93 -0.37 0.07 16 33 H 0.08 0.46 5.32 -51.93 -0.28 0.18 16 34 H 0.07 0.58 6.52 -51.93 -0.34 0.24 16 35 H 0.39 5.54 6.26 -40.82 -0.26 5.29 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -34.40 325.86 -7.70 -42.10 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.48 Total: 2.87 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.32 Total: -0.39 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.21 Total: -53.58 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.40 -7.70 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273153821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.328 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds