Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47336 * 2 1 4 4 C 1.50694 * 109.47329 * 120.00027 * 2 1 3 5 5 C 1.38678 * 120.41611 * 68.08421 * 4 2 1 6 6 C 1.38628 * 118.41933 * 179.78275 * 5 4 2 7 7 C 1.38226 * 119.16030 * 0.51465 * 6 5 4 8 8 N 1.31853 * 120.76280 * 359.71810 * 7 6 5 9 9 C 1.31883 * 121.72682 * 0.02562 * 8 7 6 10 10 N 1.46501 * 109.46890 * 240.00557 * 2 1 3 11 11 C 1.46501 * 119.99913 * 305.64097 * 10 2 1 12 12 C 1.34774 * 120.00107 * 125.64757 * 10 2 1 13 13 O 1.21589 * 120.00375 * 359.97438 * 12 10 2 14 14 N 1.34784 * 119.99925 * 180.27380 * 12 10 2 15 15 C 1.46497 * 119.99779 * 179.72295 * 14 12 10 16 16 C 1.53004 * 109.46866 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47033 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00067 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00338 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99705 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47340 * 90.00368 * 21 19 17 23 23 H 1.48505 * 109.47115 * 210.00093 * 21 19 17 24 24 H 1.48502 * 109.47327 * 330.00090 * 21 19 17 25 25 H 1.08991 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47024 * 299.99822 * 1 2 3 27 27 H 1.09002 * 109.46817 * 59.99263 * 1 2 3 28 28 H 1.07995 * 120.78989 * 0.02562 * 5 4 2 29 29 H 1.08001 * 120.41666 * 180.21211 * 6 5 4 30 30 H 1.08003 * 119.61406 * 179.75165 * 7 6 5 31 31 H 1.08001 * 119.61466 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47392 * 267.02444 * 11 10 2 33 33 H 1.09005 * 109.47072 * 27.02403 * 11 10 2 34 34 H 1.08999 * 109.46825 * 147.02432 * 11 10 2 35 35 H 0.96997 * 119.99735 * 359.72008 * 14 12 10 36 36 H 1.09004 * 109.47247 * 299.99914 * 15 14 12 37 37 H 1.08996 * 109.47279 * 60.00118 * 15 14 12 38 38 H 1.08997 * 109.46922 * 299.99780 * 16 15 14 39 39 H 1.08996 * 109.47003 * 60.00038 * 16 15 14 40 40 H 0.97000 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.8456 -2.0766 1.3778 6 6 2.3285 -2.6887 2.5240 7 6 2.9660 -1.9205 3.4802 8 7 3.1216 -0.6225 3.3086 9 6 2.6796 -0.0078 2.2287 10 7 2.0183 -0.6905 -1.1963 11 6 1.5654 -2.0519 -1.4923 12 6 2.8842 -0.0734 -2.0243 13 8 3.2599 1.0567 -1.7789 14 7 3.3292 -0.7066 -3.1278 15 6 4.2657 -0.0335 -4.0311 16 6 4.6097 -0.9646 -5.1954 17 6 5.5736 -0.2724 -6.1243 18 1 5.9071 0.7313 -5.9063 19 6 6.0288 -0.9202 -7.2531 20 7 6.8696 -0.3160 -8.0640 21 14 5.4513 -2.6561 -7.6305 22 1 4.2219 -2.5992 -8.4615 23 1 6.5152 -3.3820 -8.3699 24 1 5.1578 -3.3674 -6.3604 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.3395 -2.6507 0.6158 29 1 2.2038 -3.7514 2.6704 30 1 3.3415 -2.3891 4.3778 31 1 2.8252 1.0572 2.1236 32 1 2.2695 -2.7690 -1.0701 33 1 0.5796 -2.2101 -1.0549 34 1 1.5102 -2.1897 -2.5722 35 1 3.0293 -1.6080 -3.3238 36 1 3.8075 0.8773 -4.4168 37 1 5.1760 0.2198 -3.4878 38 1 5.0681 -1.8750 -4.8093 39 1 3.6995 -1.2183 -5.7389 40 1 7.1902 -0.7719 -8.8579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273153821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = -12.973451 kcal Electronic energy + Delta-G solvation = -21152.582964 eV Core-core repulsion = 17966.694802 eV Total energy + Delta-G solvation = -3185.888162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.75189 -40.74459 -37.70702 -36.57831 -34.93044 -33.72922 -32.97253 -31.70428 -30.40209 -28.18463 -26.79624 -24.99073 -24.42415 -22.96897 -22.38242 -20.73270 -19.22199 -18.97637 -18.05742 -17.59257 -17.16094 -16.85039 -16.32310 -16.05429 -15.51352 -15.50207 -15.08979 -14.78726 -14.61858 -14.57022 -14.29462 -13.99811 -13.40294 -13.29964 -13.25081 -13.04129 -12.89188 -12.73238 -12.19256 -12.16254 -11.94195 -11.75630 -11.52589 -11.26616 -10.78567 -10.74697 -10.51555 -10.17496 -9.97767 -9.54295 -8.29579 -6.37275 0.11287 0.33802 1.39226 1.42585 1.53713 1.63474 2.10388 2.37524 2.83447 3.05358 3.06488 3.46163 3.69271 3.89996 4.03020 4.06597 4.15827 4.26652 4.31562 4.38464 4.43418 4.59685 4.61568 4.74430 4.76461 4.81151 4.85976 4.92860 5.12146 5.16217 5.23836 5.27211 5.40470 5.43041 5.53244 5.66412 5.77589 5.90697 6.23110 6.69857 6.97003 7.01394 7.27224 7.53856 8.87399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.003450 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.034142 B = 8113.409007 C = 8230.436001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.195 3.805 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.166 4.166 7 C 0.081 3.919 8 N -0.515 5.515 9 C 0.088 3.912 10 N -0.620 5.620 11 C 0.058 3.942 12 C 0.697 3.303 13 O -0.639 6.639 14 N -0.730 5.730 15 C 0.164 3.836 16 C -0.009 4.009 17 C -0.540 4.540 18 H 0.027 0.973 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.236 1.236 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.177 0.823 31 H 0.149 0.851 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.409 0.591 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 -11.510 20.980 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.091 3.909 3 H 0.102 0.898 4 C -0.152 4.152 5 C -0.098 4.098 6 C -0.185 4.185 7 C -0.076 4.076 8 N -0.224 5.224 9 C -0.068 4.068 10 N -0.356 5.356 11 C -0.083 4.083 12 C 0.398 3.602 13 O -0.521 6.521 14 N -0.387 5.387 15 C 0.039 3.961 16 C -0.047 4.047 17 C -0.579 4.579 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.159 1.159 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.182 0.818 29 H 0.186 0.814 30 H 0.194 0.806 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.117 -10.230 21.633 29.421 hybrid contribution 0.083 -0.700 -1.318 1.495 sum -17.033 -10.930 20.315 28.676 Atomic orbital electron populations 1.22099 0.91237 1.04021 1.03208 1.19721 0.95622 0.95769 0.79813 0.89831 1.21192 1.00772 0.96194 0.97056 1.22054 0.96420 0.93409 0.97888 1.22526 0.98820 1.02973 0.94224 1.23313 0.95194 0.89117 0.99960 1.67695 1.18711 1.12763 1.23196 1.22767 0.93806 1.00729 0.89521 1.47067 1.46755 1.17438 1.24368 1.22255 1.02113 0.81187 1.02791 1.16155 0.79561 0.84012 0.80469 1.90864 1.64183 1.20320 1.76696 1.45252 1.49436 1.19797 1.24169 1.20876 0.90402 0.95380 0.89413 1.19625 0.96469 0.95760 0.92875 1.21249 1.27111 1.01621 1.07885 0.95443 1.26107 0.94435 1.03545 0.95296 1.70079 1.34015 1.40424 1.14633 0.85513 0.78245 0.78170 0.79781 1.18808 1.21298 1.15874 0.89815 0.90153 0.91963 0.81838 0.81356 0.80623 0.83353 0.91333 0.87229 0.90354 0.75332 0.94034 0.94449 0.94572 0.94449 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.96 71.98 0.64 -1.35 16 2 C 0.20 4.03 2.96 44.24 0.13 4.16 16 3 H 0.08 2.25 6.69 -2.38 -0.02 2.23 16 4 C -0.15 -2.90 4.96 -19.78 -0.10 -3.00 16 5 C -0.07 -1.00 8.48 22.47 0.19 -0.81 16 6 C -0.17 -2.09 10.11 22.36 0.23 -1.86 16 7 C 0.08 1.36 11.18 84.69 0.95 2.31 16 8 N -0.51 -12.07 10.36 -195.85 -2.03 -14.10 16 9 C 0.09 2.05 10.83 84.67 0.92 2.96 16 10 N -0.62 -14.06 2.75 -844.82 -2.32 -16.38 16 11 C 0.06 0.74 7.92 127.77 1.01 1.75 16 12 C 0.70 23.44 8.28 179.05 1.48 24.92 16 13 O -0.64 -27.71 15.68 -4.00 -0.06 -27.77 16 14 N -0.73 -23.80 5.42 -478.52 -2.59 -26.40 16 15 C 0.16 6.90 5.61 86.38 0.48 7.38 16 16 C -0.01 -0.42 4.16 29.85 0.12 -0.30 16 17 C -0.54 -31.08 9.66 25.60 0.25 -30.83 16 18 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 19 C 0.00 0.18 5.47 84.65 0.46 0.64 16 20 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 21 Si 0.96 41.93 27.47 68.60 1.88 43.82 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 25 H 0.08 0.73 6.28 -2.39 -0.02 0.71 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 1.32 4.89 -2.91 -0.01 1.31 16 29 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.15 3.38 7.97 -2.91 -0.02 3.36 16 32 H 0.07 0.75 7.19 -2.39 -0.02 0.73 16 33 H 0.11 0.70 5.32 -2.38 -0.01 0.69 16 34 H 0.08 0.93 6.52 -2.39 -0.02 0.91 16 35 H 0.41 10.29 6.26 -92.71 -0.58 9.71 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 39 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -79.46 325.86 2.36 -77.09 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.42 Total: 17.04 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 6.77 Total: 5.97 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -6.65 Total: -116.15 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.06 Total: -27.77 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -79.46 2.36 -77.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273153821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.119 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds