Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 C 1.38233 * 119.61966 * 84.99948 * 4 2 1 6 6 C 1.38626 * 119.16248 * 179.97438 * 5 4 2 7 7 C 1.38669 * 118.42371 * 0.02562 * 6 5 4 8 8 C 1.38188 * 119.16041 * 359.97438 * 7 6 5 9 9 N 1.31854 * 119.62287 * 264.72157 * 4 2 1 10 10 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 11 11 C 1.46499 * 120.00062 * 60.00143 * 10 2 1 12 12 C 1.34779 * 119.99726 * 239.99897 * 10 2 1 13 13 O 1.21582 * 120.00318 * 0.02562 * 12 10 2 14 14 N 1.34774 * 119.99640 * 180.02562 * 12 10 2 15 15 C 1.46499 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47403 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47045 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99940 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47034 * 90.00067 * 21 19 17 23 23 H 1.48503 * 109.46913 * 210.00080 * 21 19 17 24 24 H 1.48497 * 109.47129 * 330.00027 * 21 19 17 25 25 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 27 27 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 28 28 H 1.08008 * 120.41357 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.78760 * 180.02562 * 6 5 4 30 30 H 1.07989 * 120.42129 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.61493 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.47391 * 89.99876 * 11 10 2 33 33 H 1.09001 * 109.46813 * 329.99933 * 11 10 2 34 34 H 1.09004 * 109.47041 * 210.00060 * 11 10 2 35 35 H 0.97001 * 120.00361 * 359.97438 * 14 12 10 36 36 H 1.09002 * 109.47093 * 299.99866 * 15 14 12 37 37 H 1.09006 * 109.47588 * 59.99611 * 15 14 12 38 38 H 1.09002 * 109.47172 * 300.00167 * 16 15 14 39 39 H 1.09004 * 109.47016 * 59.99953 * 16 15 14 40 40 H 0.96998 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.1613 -0.0130 -2.4171 6 6 2.6247 -0.6756 -3.5431 7 6 2.9421 -2.0210 -3.4333 8 6 2.7875 -2.6520 -2.2136 9 7 2.3489 -1.9884 -1.1617 10 7 2.0183 -0.6907 1.1961 11 6 1.6645 -2.0933 1.4278 12 6 2.7932 -0.0358 2.0833 13 8 3.0866 1.1284 1.8912 14 7 3.2430 -0.6714 3.1833 15 6 4.0848 0.0406 4.1480 16 6 4.4546 -0.9016 5.2954 17 6 5.3210 -0.1693 6.2873 18 1 5.5816 0.8648 6.1167 19 6 5.7812 -0.8195 7.4127 20 7 5.4636 -2.0787 7.6207 21 14 6.8547 0.0884 8.6427 22 1 5.9958 0.7320 9.6690 23 1 7.7758 -0.8731 9.3002 24 1 7.6458 1.1280 7.9366 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.9041 1.0349 -2.4662 29 1 2.7360 -0.1563 -4.4835 30 1 3.3063 -2.5686 -4.2898 31 1 3.0329 -3.6995 -2.1197 32 1 2.4158 -2.7378 0.9713 33 1 0.6905 -2.3003 0.9844 34 1 1.6239 -2.2855 2.5000 35 1 3.0087 -1.6001 3.3368 36 1 4.9929 0.3850 3.6531 37 1 3.5393 0.8975 4.5435 38 1 3.5463 -1.2456 5.7901 39 1 5.0000 -1.7587 4.9002 40 1 5.7876 -2.5363 8.4122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273631766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = 9.323797 kcal Electronic energy + Delta-G solvation = -21087.433892 eV Core-core repulsion = 17902.512612 eV Total energy + Delta-G solvation = -3184.921280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69371 -39.47206 -36.15703 -34.71759 -33.07352 -32.59891 -32.18027 -29.96917 -29.02924 -26.72066 -24.92962 -24.09336 -23.67799 -21.73230 -20.79849 -19.41481 -17.83532 -17.09916 -16.58318 -16.21193 -15.90927 -15.38399 -15.17503 -14.53430 -14.41234 -14.01801 -13.89325 -13.63221 -13.31323 -13.13286 -12.68197 -12.39489 -12.30705 -12.21228 -12.08786 -11.87291 -11.22325 -11.09700 -10.99342 -10.58908 -10.26096 -10.07772 -9.84164 -9.65017 -9.46083 -9.20684 -9.17163 -8.57267 -8.39500 -8.07610 -6.04750 -4.07081 0.89088 1.08311 2.98583 3.32717 3.38592 3.43401 3.57613 3.65893 4.07654 4.39626 4.50908 4.55850 4.63394 4.86014 4.92952 5.09459 5.10968 5.26029 5.32229 5.38554 5.45977 5.55957 5.72154 5.73952 5.88992 5.94685 6.03413 6.11739 6.35365 6.47014 6.50337 6.71471 6.84377 7.10432 7.30368 7.62302 7.69646 7.83257 7.94865 8.31314 8.47689 8.97964 9.07976 9.57287 11.06988 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.003189 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.695396 B = 8778.147376 C = 8947.926754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.204 3.796 3 H 0.117 0.883 4 C 0.125 3.875 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.181 4.181 8 C 0.100 3.900 9 N -0.468 5.468 10 N -0.622 5.622 11 C 0.094 3.906 12 C 0.702 3.298 13 O -0.603 6.603 14 N -0.736 5.736 15 C 0.140 3.860 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -1.609 -22.310 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.098 3.902 3 H 0.135 0.865 4 C -0.014 4.014 5 C -0.186 4.186 6 C -0.100 4.100 7 C -0.201 4.201 8 C -0.057 4.057 9 N -0.177 5.177 10 N -0.359 5.359 11 C -0.049 4.049 12 C 0.403 3.597 13 O -0.482 6.482 14 N -0.391 5.391 15 C 0.017 3.983 16 C -0.024 4.024 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.229 0.771 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.233 -1.342 -21.471 23.822 hybrid contribution 0.647 0.206 -0.154 0.697 sum -9.585 -1.136 -21.625 23.681 Atomic orbital electron populations 1.22123 0.93713 1.02740 1.02820 1.19715 0.93895 0.96570 0.79988 0.86481 1.21754 0.94410 0.90472 0.94787 1.21898 1.01747 1.01525 0.93414 1.21548 0.95316 0.94501 0.98612 1.22128 1.02539 0.95793 0.99617 1.22827 0.94557 1.00121 0.88221 1.67627 1.10583 1.08525 1.30990 1.46784 1.54025 1.12643 1.22478 1.21657 1.01490 0.81765 0.99992 1.15982 0.78765 0.84721 0.80223 1.90849 1.63777 1.15787 1.77817 1.45644 1.54790 1.15768 1.22867 1.21580 0.92078 0.95882 0.88789 1.19320 0.97043 0.94650 0.91423 1.21061 1.31001 0.98061 1.05685 0.92234 1.24999 0.96395 0.94908 0.98034 1.69962 1.45550 1.10018 1.27846 0.86512 0.80314 0.79504 0.81222 1.20586 1.21214 1.19729 0.91957 0.91141 0.91429 0.84665 0.84895 0.85006 0.82783 0.91338 0.91621 0.92471 0.77068 0.92905 0.92840 0.95998 0.95997 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.15 37.16 0.34 -1.18 16 2 C 0.20 2.60 2.91 -69.08 -0.20 2.40 16 3 H 0.12 1.65 6.87 -51.93 -0.36 1.30 16 4 C 0.12 1.48 5.88 -82.58 -0.49 0.99 16 5 C -0.17 -1.60 9.77 -39.44 -0.39 -1.99 16 6 C -0.07 -0.60 10.18 -39.28 -0.40 -1.00 16 7 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 8 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 9 N -0.47 -5.62 7.23 -9.47 -0.07 -5.68 16 10 N -0.62 -9.30 2.69 -181.01 -0.49 -9.78 16 11 C 0.09 1.16 8.57 59.85 0.51 1.68 16 12 C 0.70 13.44 8.28 -86.92 -0.72 12.72 16 13 O -0.60 -13.53 15.67 5.29 0.08 -13.45 16 14 N -0.74 -14.24 5.42 -65.22 -0.35 -14.59 16 15 C 0.14 3.16 5.61 -4.04 -0.02 3.13 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.06 0.59 6.66 -51.93 -0.35 0.24 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 30 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.07 0.87 6.95 -51.93 -0.36 0.51 16 33 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 34 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 35 H 0.39 6.80 6.20 -40.82 -0.25 6.55 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -33.89 333.07 -8.35 -42.24 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.75 Total: 3.00 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.51 Total: 2.36 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.17 Total: -55.87 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.89 -8.35 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273631766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.561 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds