Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 C 1.38233 * 119.61966 * 84.99948 * 4 2 1 6 6 C 1.38626 * 119.16248 * 179.97438 * 5 4 2 7 7 C 1.38669 * 118.42371 * 0.02562 * 6 5 4 8 8 C 1.38188 * 119.16041 * 359.97438 * 7 6 5 9 9 N 1.31854 * 119.62287 * 264.72157 * 4 2 1 10 10 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 11 11 C 1.46499 * 120.00062 * 60.00143 * 10 2 1 12 12 C 1.34779 * 119.99726 * 239.99897 * 10 2 1 13 13 O 1.21582 * 120.00318 * 0.02562 * 12 10 2 14 14 N 1.34774 * 119.99640 * 180.02562 * 12 10 2 15 15 C 1.46499 * 120.00002 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47403 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47045 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99940 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47034 * 90.00067 * 21 19 17 23 23 H 1.48503 * 109.46913 * 210.00080 * 21 19 17 24 24 H 1.48497 * 109.47129 * 330.00027 * 21 19 17 25 25 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 27 27 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 28 28 H 1.08008 * 120.41357 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.78760 * 180.02562 * 6 5 4 30 30 H 1.07989 * 120.42129 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.61493 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.47391 * 89.99876 * 11 10 2 33 33 H 1.09001 * 109.46813 * 329.99933 * 11 10 2 34 34 H 1.09004 * 109.47041 * 210.00060 * 11 10 2 35 35 H 0.97001 * 120.00361 * 359.97438 * 14 12 10 36 36 H 1.09002 * 109.47093 * 299.99866 * 15 14 12 37 37 H 1.09006 * 109.47588 * 59.99611 * 15 14 12 38 38 H 1.09002 * 109.47172 * 300.00167 * 16 15 14 39 39 H 1.09004 * 109.47016 * 59.99953 * 16 15 14 40 40 H 0.96998 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 2.1613 -0.0130 -2.4171 6 6 2.6247 -0.6756 -3.5431 7 6 2.9421 -2.0210 -3.4333 8 6 2.7875 -2.6520 -2.2136 9 7 2.3489 -1.9884 -1.1617 10 7 2.0183 -0.6907 1.1961 11 6 1.6645 -2.0933 1.4278 12 6 2.7932 -0.0358 2.0833 13 8 3.0866 1.1284 1.8912 14 7 3.2430 -0.6714 3.1833 15 6 4.0848 0.0406 4.1480 16 6 4.4546 -0.9016 5.2954 17 6 5.3210 -0.1693 6.2873 18 1 5.5816 0.8648 6.1167 19 6 5.7812 -0.8195 7.4127 20 7 5.4636 -2.0787 7.6207 21 14 6.8547 0.0884 8.6427 22 1 5.9958 0.7320 9.6690 23 1 7.7758 -0.8731 9.3002 24 1 7.6458 1.1280 7.9366 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.9041 1.0349 -2.4662 29 1 2.7360 -0.1563 -4.4835 30 1 3.3063 -2.5686 -4.2898 31 1 3.0329 -3.6995 -2.1197 32 1 2.4158 -2.7378 0.9713 33 1 0.6905 -2.3003 0.9844 34 1 1.6239 -2.2855 2.5000 35 1 3.0087 -1.6001 3.3368 36 1 4.9929 0.3850 3.6531 37 1 3.5393 0.8975 4.5435 38 1 3.5463 -1.2456 5.7901 39 1 5.0000 -1.7587 4.9002 40 1 5.7876 -2.5363 8.4122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273631766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -12.184485 kcal Electronic energy + Delta-G solvation = -21088.366561 eV Core-core repulsion = 17902.512612 eV Total energy + Delta-G solvation = -3185.853949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66940 -40.69169 -37.39928 -36.48323 -34.92886 -33.46335 -33.28996 -31.33134 -30.35316 -27.84933 -26.74162 -25.12892 -24.39618 -23.18754 -22.36328 -20.75078 -19.16975 -18.50186 -17.92910 -17.48504 -16.81029 -16.66507 -16.48036 -16.27169 -15.51515 -15.31889 -15.21422 -14.73431 -14.47274 -14.28787 -14.20512 -13.79175 -13.35408 -13.20733 -13.11092 -12.97166 -12.93024 -12.67754 -12.51513 -12.24024 -12.08482 -11.65855 -11.47720 -11.16939 -10.76951 -10.60140 -10.48071 -10.08396 -9.89590 -9.39677 -8.23427 -6.34031 0.17566 0.41068 1.42005 1.43133 1.54400 1.68473 2.12785 2.41418 2.86874 3.08777 3.11080 3.28680 3.77833 4.06868 4.16009 4.19061 4.26797 4.31899 4.33914 4.46428 4.50864 4.62940 4.71091 4.77252 4.83885 4.85608 4.90685 5.10574 5.18509 5.23606 5.30622 5.31196 5.49608 5.58325 5.58800 5.79524 5.82710 5.98411 6.17228 6.78727 6.99107 7.08789 7.35105 7.55840 8.88695 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.003189 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.695396 B = 8778.147376 C = 8947.926754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.199 3.801 3 H 0.097 0.903 4 C 0.100 3.900 5 C -0.173 4.173 6 C -0.075 4.075 7 C -0.174 4.174 8 C 0.083 3.917 9 N -0.494 5.494 10 N -0.613 5.613 11 C 0.095 3.905 12 C 0.697 3.303 13 O -0.640 6.640 14 N -0.734 5.734 15 C 0.161 3.839 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.173 0.827 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.404 0.596 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.009 0.991 39 H 0.006 0.994 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -1.784 -23.777 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.094 3.906 3 H 0.115 0.885 4 C -0.039 4.039 5 C -0.193 4.193 6 C -0.101 4.101 7 C -0.194 4.194 8 C -0.074 4.074 9 N -0.203 5.203 10 N -0.349 5.349 11 C -0.047 4.047 12 C 0.399 3.601 13 O -0.523 6.523 14 N -0.389 5.389 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.241 0.759 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.438 -1.550 -22.977 25.284 hybrid contribution 0.677 0.195 0.174 0.725 sum -9.761 -1.356 -22.802 24.841 Atomic orbital electron populations 1.22053 0.91467 1.03285 1.03541 1.19887 0.95616 0.95500 0.79629 0.88531 1.21611 0.96318 0.90954 0.94976 1.22119 1.01619 1.02287 0.93262 1.21954 0.94145 0.94725 0.99228 1.22495 1.01004 0.95951 0.99905 1.23251 0.94615 1.01079 0.88474 1.67527 1.11574 1.08788 1.32445 1.46858 1.52434 1.13445 1.22127 1.21767 1.02504 0.80124 1.00309 1.16119 0.79113 0.84404 0.80505 1.90813 1.65299 1.17509 1.78685 1.45382 1.54680 1.16119 1.22748 1.21080 0.91955 0.94976 0.88347 1.19114 0.95836 0.94380 0.91880 1.21453 1.31849 0.98418 1.06782 0.92271 1.25892 0.97630 0.95742 0.99934 1.70067 1.46475 1.11431 1.28642 0.85415 0.78500 0.78351 0.78601 1.19665 1.20440 1.19073 0.91384 0.91939 0.89157 0.83306 0.81907 0.82034 0.80991 0.91476 0.89533 0.92258 0.75867 0.94133 0.93693 0.97307 0.97549 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.15 71.98 0.66 -2.04 16 2 C 0.20 5.03 2.91 44.24 0.13 5.16 16 3 H 0.10 2.82 6.87 -2.39 -0.02 2.80 16 4 C 0.10 2.29 5.88 42.55 0.25 2.54 16 5 C -0.17 -3.08 9.77 22.36 0.22 -2.86 16 6 C -0.07 -1.01 10.18 22.47 0.23 -0.79 16 7 C -0.17 -2.31 10.11 22.36 0.23 -2.09 16 8 C 0.08 1.44 11.18 84.67 0.95 2.39 16 9 N -0.49 -11.36 7.23 -183.88 -1.33 -12.69 16 10 N -0.61 -18.39 2.69 -844.84 -2.28 -20.66 16 11 C 0.10 2.30 8.57 127.77 1.10 3.39 16 12 C 0.70 27.27 8.28 179.05 1.48 28.76 16 13 O -0.64 -29.62 15.67 -3.97 -0.06 -29.68 16 14 N -0.73 -29.01 5.42 -478.53 -2.59 -31.60 16 15 C 0.16 7.48 5.61 86.38 0.48 7.96 16 16 C 0.03 1.34 5.09 29.85 0.15 1.49 16 17 C -0.55 -31.45 9.11 25.60 0.23 -31.21 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.01 0.38 5.46 84.65 0.46 0.85 16 20 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 21 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H 0.07 1.19 6.66 -2.39 -0.02 1.17 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.16 1.12 8.06 -2.92 -0.02 1.10 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.07 1.67 6.95 -2.39 -0.02 1.66 16 33 H 0.09 1.73 6.43 -2.39 -0.02 1.72 16 34 H 0.06 1.39 6.36 -2.38 -0.02 1.38 16 35 H 0.40 14.18 6.20 -92.71 -0.58 13.61 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 2.15 8.14 -2.38 -0.02 2.14 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -73.41 333.07 3.08 -70.33 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.46 Total: 19.31 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.57 Total: 13.55 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.91 Total: -119.95 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.06 Total: -29.68 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.41 3.08 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273631766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.147 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds