Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47041 * 2 1 4 4 C 1.50702 * 109.46916 * 119.99624 * 2 1 3 5 5 C 1.38225 * 119.61833 * 274.99961 * 4 2 1 6 6 C 1.38635 * 119.15939 * 180.02562 * 5 4 2 7 7 C 1.38675 * 118.41956 * 0.02562 * 6 5 4 8 8 C 1.38186 * 119.16332 * 0.27967 * 7 6 5 9 9 N 1.31860 * 119.61626 * 95.02638 * 4 2 1 10 10 N 1.46499 * 109.47220 * 239.99495 * 2 1 3 11 11 C 1.46490 * 120.00516 * 300.00331 * 10 2 1 12 12 C 1.34782 * 119.99348 * 119.99876 * 10 2 1 13 13 O 1.21583 * 120.00394 * 0.02562 * 12 10 2 14 14 N 1.34777 * 119.99736 * 180.02562 * 12 10 2 15 15 C 1.46497 * 120.00435 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47553 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47413 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99637 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00382 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99771 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47296 * 60.00483 * 21 19 17 23 23 H 1.48502 * 109.46869 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47274 * 300.00166 * 21 19 17 25 25 H 1.08997 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47524 * 299.99893 * 1 2 3 27 27 H 1.08995 * 109.47033 * 60.00521 * 1 2 3 28 28 H 1.07997 * 120.42054 * 0.04702 * 5 4 2 29 29 H 1.07999 * 120.78848 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.41399 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.61418 * 179.70216 * 8 7 6 32 32 H 1.09002 * 109.47427 * 89.99515 * 11 10 2 33 33 H 1.08998 * 109.47379 * 210.00074 * 11 10 2 34 34 H 1.09004 * 109.46904 * 330.00084 * 11 10 2 35 35 H 0.97003 * 119.99628 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.46552 * 300.00258 * 15 14 12 37 37 H 1.08999 * 109.47273 * 59.99279 * 15 14 12 38 38 H 1.08998 * 109.46942 * 299.99577 * 16 15 14 39 39 H 1.08999 * 109.47438 * 59.99358 * 16 15 14 40 40 H 0.97005 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1613 -0.0131 2.4170 6 6 2.6247 -0.6758 3.5431 7 6 2.9431 -2.0210 3.4329 8 6 2.7944 -2.6503 2.2116 9 7 2.3442 -1.9897 1.1627 10 7 2.0184 -0.6907 -1.1961 11 6 1.6645 -2.0932 -1.4279 12 6 2.7932 -0.0356 -2.0833 13 8 3.0873 1.1283 -1.8907 14 7 3.2421 -0.6708 -3.1839 15 6 4.0848 0.0409 -4.1480 16 6 4.4533 -0.9008 -5.2961 17 6 5.3197 -0.1684 -6.2882 18 1 5.5809 0.8655 -6.1171 19 6 5.7788 -0.8182 -7.4142 20 7 5.4603 -2.0770 -7.6228 21 14 6.8532 0.0894 -8.6435 22 1 8.0911 0.5563 -7.9691 23 1 7.2108 -0.8246 -9.7579 24 1 6.1115 1.2582 -9.1811 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.9039 1.0346 2.4664 29 1 2.7360 -0.1566 4.4835 30 1 3.3073 -2.5686 4.2895 31 1 3.0448 -3.6966 2.1164 32 1 0.7376 -2.1444 -1.9993 33 1 2.4630 -2.5819 -1.9862 34 1 1.5295 -2.5968 -0.4707 35 1 3.0078 -1.5995 -3.3374 36 1 3.5403 0.8987 -4.5427 37 1 4.9933 0.3838 -3.6529 38 1 4.9977 -1.7588 -4.9018 39 1 3.5446 -1.2433 -5.7911 40 1 5.7830 -2.5341 -8.4152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273631768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 11.793780 kcal Electronic energy + Delta-G solvation = -21089.510883 eV Core-core repulsion = 17904.696710 eV Total energy + Delta-G solvation = -3184.814174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73698 -39.46263 -36.14018 -34.71046 -33.07238 -32.64720 -32.17822 -29.97667 -29.03497 -26.66054 -24.93329 -24.10423 -23.70919 -21.75147 -20.79760 -19.42646 -17.82633 -17.10982 -16.59440 -16.21594 -15.94605 -15.33636 -15.15179 -14.55125 -14.42998 -14.00792 -13.89251 -13.67587 -13.27034 -13.19260 -12.71127 -12.38929 -12.36919 -12.20459 -11.98919 -11.86582 -11.28218 -11.10031 -10.97504 -10.60498 -10.25103 -10.10364 -9.87478 -9.59148 -9.39563 -9.21356 -9.18225 -8.56617 -8.38875 -8.06584 -6.04375 -4.06840 0.87187 1.04943 2.99782 3.34719 3.38101 3.41928 3.55764 3.64682 4.03943 4.40591 4.49329 4.57485 4.62065 4.84014 4.90928 5.08746 5.13246 5.28671 5.32489 5.40518 5.52191 5.54080 5.71203 5.77715 5.85911 5.93319 6.02891 6.13527 6.36239 6.47379 6.53837 6.73228 6.84704 7.11245 7.31654 7.62476 7.69960 7.79066 7.95088 8.31660 8.48492 8.98006 9.08895 9.57470 11.07340 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.003189 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.676528 B = 8778.317942 C = 8947.822325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.204 3.796 3 H 0.117 0.883 4 C 0.126 3.874 5 C -0.165 4.165 6 C -0.072 4.072 7 C -0.181 4.181 8 C 0.100 3.900 9 N -0.470 5.470 10 N -0.621 5.621 11 C 0.071 3.929 12 C 0.701 3.299 13 O -0.603 6.603 14 N -0.736 5.736 15 C 0.140 3.860 16 C 0.014 3.986 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.156 0.844 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -1.682 22.625 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.098 3.902 3 H 0.135 0.865 4 C -0.012 4.012 5 C -0.186 4.186 6 C -0.098 4.098 7 C -0.201 4.201 8 C -0.057 4.057 9 N -0.179 5.179 10 N -0.357 5.357 11 C -0.072 4.072 12 C 0.402 3.598 13 O -0.483 6.483 14 N -0.391 5.391 15 C 0.017 3.983 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.229 0.771 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.149 -1.420 21.789 24.078 hybrid contribution 0.688 0.226 0.080 0.729 sum -9.461 -1.194 21.869 23.857 Atomic orbital electron populations 1.22109 0.93621 1.02774 1.02760 1.19713 0.93962 0.96580 0.79940 0.86480 1.21765 0.94223 0.90384 0.94866 1.21895 1.01744 1.01584 0.93339 1.21565 0.95146 0.94469 0.98635 1.22127 1.02576 0.95801 0.99564 1.22862 0.94297 1.00217 0.88305 1.67508 1.11028 1.08592 1.30764 1.46778 1.54038 1.12587 1.22343 1.22042 0.99301 0.81741 1.04152 1.16018 0.78755 0.84711 0.80303 1.90846 1.63774 1.15776 1.77902 1.45640 1.54864 1.15721 1.22841 1.21575 0.92053 0.95897 0.88799 1.19311 0.97048 0.94630 0.91407 1.21024 1.31099 0.98072 1.05701 0.92286 1.24993 0.96376 0.94914 0.98019 1.69953 1.45487 1.10061 1.27889 0.86571 0.80879 0.79505 0.80558 1.20125 1.21279 1.20121 0.91997 0.91484 0.91176 0.84596 0.84841 0.84952 0.82699 0.94074 0.92028 0.87486 0.77075 0.92827 0.92940 0.96035 0.95985 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 2 C 0.20 2.60 2.91 -69.08 -0.20 2.40 16 3 H 0.12 1.66 6.87 -51.93 -0.36 1.30 16 4 C 0.13 1.48 5.87 -82.58 -0.48 1.00 16 5 C -0.17 -1.57 9.77 -39.44 -0.39 -1.96 16 6 C -0.07 -0.57 10.18 -39.27 -0.40 -0.97 16 7 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 8 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 9 N -0.47 -5.54 6.69 -9.47 -0.06 -5.60 16 10 N -0.62 -9.36 2.69 -181.01 -0.49 -9.85 16 11 C 0.07 0.89 8.85 59.84 0.53 1.42 16 12 C 0.70 13.54 8.28 -86.91 -0.72 12.82 16 13 O -0.60 -13.62 15.67 5.29 0.08 -13.53 16 14 N -0.74 -14.38 5.42 -65.23 -0.35 -14.74 16 15 C 0.14 3.18 5.61 -4.05 -0.02 3.16 16 16 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 17 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 18 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.11 1.25 5.23 -51.93 -0.27 0.98 16 35 H 0.39 6.90 6.20 -40.82 -0.25 6.64 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -33.96 333.83 -8.37 -42.33 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.80 Total: 3.24 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.49 Total: 2.26 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.17 Total: -56.07 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.96 -8.37 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273631768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.123 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds