Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47041 * 2 1 4 4 C 1.50702 * 109.46916 * 119.99624 * 2 1 3 5 5 C 1.38225 * 119.61833 * 274.99961 * 4 2 1 6 6 C 1.38635 * 119.15939 * 180.02562 * 5 4 2 7 7 C 1.38675 * 118.41956 * 0.02562 * 6 5 4 8 8 C 1.38186 * 119.16332 * 0.27967 * 7 6 5 9 9 N 1.31860 * 119.61626 * 95.02638 * 4 2 1 10 10 N 1.46499 * 109.47220 * 239.99495 * 2 1 3 11 11 C 1.46490 * 120.00516 * 300.00331 * 10 2 1 12 12 C 1.34782 * 119.99348 * 119.99876 * 10 2 1 13 13 O 1.21583 * 120.00394 * 0.02562 * 12 10 2 14 14 N 1.34777 * 119.99736 * 180.02562 * 12 10 2 15 15 C 1.46497 * 120.00435 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47553 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47413 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99637 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00382 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99771 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47296 * 60.00483 * 21 19 17 23 23 H 1.48502 * 109.46869 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47274 * 300.00166 * 21 19 17 25 25 H 1.08997 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47524 * 299.99893 * 1 2 3 27 27 H 1.08995 * 109.47033 * 60.00521 * 1 2 3 28 28 H 1.07997 * 120.42054 * 0.04702 * 5 4 2 29 29 H 1.07999 * 120.78848 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.41399 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.61418 * 179.70216 * 8 7 6 32 32 H 1.09002 * 109.47427 * 89.99515 * 11 10 2 33 33 H 1.08998 * 109.47379 * 210.00074 * 11 10 2 34 34 H 1.09004 * 109.46904 * 330.00084 * 11 10 2 35 35 H 0.97003 * 119.99628 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.46552 * 300.00258 * 15 14 12 37 37 H 1.08999 * 109.47273 * 59.99279 * 15 14 12 38 38 H 1.08998 * 109.46942 * 299.99577 * 16 15 14 39 39 H 1.08999 * 109.47438 * 59.99358 * 16 15 14 40 40 H 0.97005 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1613 -0.0131 2.4170 6 6 2.6247 -0.6758 3.5431 7 6 2.9431 -2.0210 3.4329 8 6 2.7944 -2.6503 2.2116 9 7 2.3442 -1.9897 1.1627 10 7 2.0184 -0.6907 -1.1961 11 6 1.6645 -2.0932 -1.4279 12 6 2.7932 -0.0356 -2.0833 13 8 3.0873 1.1283 -1.8907 14 7 3.2421 -0.6708 -3.1839 15 6 4.0848 0.0409 -4.1480 16 6 4.4533 -0.9008 -5.2961 17 6 5.3197 -0.1684 -6.2882 18 1 5.5809 0.8655 -6.1171 19 6 5.7788 -0.8182 -7.4142 20 7 5.4603 -2.0770 -7.6228 21 14 6.8532 0.0894 -8.6435 22 1 8.0911 0.5563 -7.9691 23 1 7.2108 -0.8246 -9.7579 24 1 6.1115 1.2582 -9.1811 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.9039 1.0346 2.4664 29 1 2.7360 -0.1566 4.4835 30 1 3.3073 -2.5686 4.2895 31 1 3.0448 -3.6966 2.1164 32 1 0.7376 -2.1444 -1.9993 33 1 2.4630 -2.5819 -1.9862 34 1 1.5295 -2.5968 -0.4707 35 1 3.0078 -1.5995 -3.3374 36 1 3.5403 0.8987 -4.5427 37 1 4.9933 0.3838 -3.6529 38 1 4.9977 -1.7588 -4.9018 39 1 3.5446 -1.2433 -5.7911 40 1 5.7830 -2.5341 -8.4152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273631768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = -9.652908 kcal Electronic energy + Delta-G solvation = -21090.440882 eV Core-core repulsion = 17904.696710 eV Total energy + Delta-G solvation = -3185.744172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69615 -40.69991 -37.38619 -36.48419 -34.93282 -33.47533 -33.31767 -31.33193 -30.36874 -27.80460 -26.74175 -25.14344 -24.41307 -23.19813 -22.37450 -20.77562 -19.16774 -18.50202 -17.91964 -17.51786 -16.81922 -16.65830 -16.48590 -16.27167 -15.43563 -15.33876 -15.25159 -14.76994 -14.44733 -14.28643 -14.24323 -13.81774 -13.48047 -13.16217 -13.12137 -12.92439 -12.86452 -12.67769 -12.52847 -12.23960 -12.14425 -11.66163 -11.49782 -11.19615 -10.77567 -10.60112 -10.40582 -10.07745 -9.90019 -9.37824 -8.23655 -6.34538 0.17003 0.39083 1.41678 1.44839 1.52496 1.68862 2.12161 2.41199 2.85250 3.07674 3.10760 3.27461 3.76825 4.06692 4.15921 4.20435 4.28832 4.31765 4.40332 4.45806 4.49981 4.57545 4.72772 4.75732 4.83684 4.85022 4.92214 5.13106 5.19213 5.27478 5.30333 5.30680 5.49267 5.57589 5.59023 5.78605 5.83722 6.00071 6.16663 6.77979 6.98829 7.05488 7.34614 7.55683 8.88309 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.003189 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.676528 B = 8778.317942 C = 8947.822325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.199 3.801 3 H 0.097 0.903 4 C 0.101 3.899 5 C -0.172 4.172 6 C -0.073 4.073 7 C -0.174 4.174 8 C 0.083 3.917 9 N -0.496 5.496 10 N -0.612 5.612 11 C 0.070 3.930 12 C 0.696 3.304 13 O -0.641 6.641 14 N -0.734 5.734 15 C 0.161 3.839 16 C 0.026 3.974 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.268 1.268 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.150 0.850 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.175 0.825 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.404 0.596 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 -1.857 24.157 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.093 3.907 3 H 0.115 0.885 4 C -0.037 4.037 5 C -0.192 4.192 6 C -0.099 4.099 7 C -0.193 4.193 8 C -0.073 4.073 9 N -0.205 5.205 10 N -0.347 5.347 11 C -0.072 4.072 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.390 5.390 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.587 4.587 18 H 0.078 0.922 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.182 0.818 30 H 0.181 0.819 31 H 0.192 0.808 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.241 0.759 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.292 -1.627 23.362 25.580 hybrid contribution 0.697 0.212 -0.266 0.776 sum -9.595 -1.415 23.095 25.049 Atomic orbital electron populations 1.22037 0.91449 1.03282 1.03467 1.19884 0.95638 0.95527 0.79604 0.88515 1.21594 0.96197 0.90883 0.95004 1.22112 1.01609 1.02341 0.93173 1.21973 0.93945 0.94700 0.99237 1.22498 1.01003 0.95943 0.99858 1.23292 0.94302 1.01191 0.88526 1.67368 1.12070 1.08839 1.32250 1.46863 1.52489 1.13359 1.21997 1.22192 0.99655 0.80252 1.05109 1.16165 0.79134 0.84396 0.80589 1.90810 1.65298 1.17471 1.78763 1.45384 1.54774 1.16065 1.22740 1.21077 0.91939 0.94979 0.88358 1.19105 0.95822 0.94368 0.91874 1.21429 1.31952 0.98475 1.06798 0.92238 1.25894 0.97610 0.95749 0.99927 1.70062 1.46415 1.11490 1.28657 0.85468 0.79030 0.78384 0.77976 1.19322 1.20462 1.19264 0.91484 0.89131 0.92076 0.83247 0.81836 0.81946 0.80824 0.92615 0.92522 0.86204 0.75909 0.93711 0.94116 0.97583 0.97361 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C 0.20 5.05 2.91 44.25 0.13 5.18 16 3 H 0.10 2.83 6.87 -2.39 -0.02 2.81 16 4 C 0.10 2.30 5.87 42.55 0.25 2.55 16 5 C -0.17 -3.00 9.77 22.36 0.22 -2.79 16 6 C -0.07 -0.95 10.18 22.47 0.23 -0.72 16 7 C -0.17 -2.21 10.11 22.36 0.23 -1.99 16 8 C 0.08 1.41 11.18 84.67 0.95 2.36 16 9 N -0.50 -11.18 6.69 -183.88 -1.23 -12.41 16 10 N -0.61 -18.57 2.69 -844.86 -2.28 -20.85 16 11 C 0.07 1.73 8.85 127.77 1.13 2.86 16 12 C 0.70 27.50 8.28 179.05 1.48 28.98 16 13 O -0.64 -29.81 15.67 -3.98 -0.06 -29.88 16 14 N -0.73 -29.37 5.42 -478.55 -2.59 -31.97 16 15 C 0.16 7.53 5.61 86.38 0.48 8.02 16 16 C 0.03 1.37 5.09 29.85 0.15 1.52 16 17 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 21 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.44 6.36 -2.39 -0.02 1.43 16 34 H 0.12 2.71 5.23 -2.39 -0.01 2.70 16 35 H 0.40 14.42 6.20 -92.71 -0.58 13.84 16 36 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -73.66 333.83 3.21 -70.45 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.46 Total: 20.00 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.60 Total: 13.35 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -5.82 Total: -120.42 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.06 Total: -29.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.66 3.21 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273631768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.794 kcal (2) G-P(sol) polarization free energy of solvation -73.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds