Wall clock time and date at job start Mon Mar 30 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00099 * 2 1 4 4 N 1.46898 * 109.47690 * 124.48655 * 3 2 1 5 5 C 1.46892 * 111.00333 * 199.56190 * 4 3 2 6 6 C 1.50697 * 109.47264 * 66.04923 * 5 4 3 7 7 H 1.07997 * 120.00292 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00097 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00130 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00067 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46543 * 90.00465 * 10 8 6 12 12 H 1.48495 * 109.47248 * 210.00474 * 10 8 6 13 13 H 1.48498 * 109.47023 * 330.00952 * 10 8 6 14 14 C 1.46905 * 110.99751 * 75.60304 * 4 3 2 15 15 H 1.08995 * 109.47145 * 305.92452 * 14 4 3 16 16 C 1.53002 * 109.46868 * 185.91808 * 14 4 3 17 17 C 1.50699 * 109.46668 * 65.92405 * 14 4 3 18 18 N 1.31138 * 126.54963 * 235.64173 * 17 14 4 19 19 C 1.34491 * 105.61326 * 179.91748 * 18 17 14 20 20 C 1.50699 * 126.28563 * 180.12469 * 19 18 17 21 21 C 1.52992 * 117.50073 * 188.91095 * 20 19 18 22 22 C 1.52997 * 60.00434 * 252.51118 * 21 20 19 23 23 N 1.29940 * 107.42685 * 0.34928 * 19 18 17 24 24 O 1.21302 * 110.25182 * 359.77887 * 23 19 18 25 25 H 1.08008 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.00178 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99865 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46894 * 244.49247 * 3 2 1 29 29 H 1.09001 * 109.47209 * 4.48512 * 3 2 1 30 30 H 1.09004 * 109.47053 * 186.04877 * 5 4 3 31 31 H 1.08995 * 109.47023 * 306.04453 * 5 4 3 32 32 H 0.97000 * 119.99922 * 179.97438 * 9 8 6 33 33 H 1.08988 * 109.47438 * 300.00462 * 16 14 4 34 34 H 1.08996 * 109.46767 * 60.00660 * 16 14 4 35 35 H 1.09006 * 109.46329 * 179.97438 * 16 14 4 36 36 H 1.09006 * 115.55343 * 334.62256 * 20 19 18 37 37 H 1.08997 * 117.49933 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.50524 * 145.02202 * 21 20 19 39 39 H 1.09001 * 117.49973 * 252.51020 * 22 21 20 40 40 H 1.09006 * 117.51782 * 107.47429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9876 1.3372 1.1415 5 6 3.3888 2.7149 1.4555 6 6 2.1907 3.4885 1.9424 7 1 1.2274 3.0052 2.0112 8 6 2.3242 4.8137 2.2989 9 7 1.2785 5.4890 2.7233 10 14 3.9902 5.6500 2.1792 11 1 4.1448 6.2545 0.8316 12 1 4.0863 6.7123 3.2123 13 1 5.0640 4.6478 2.3982 14 6 4.1619 0.4905 0.8921 15 1 3.8353 -0.5152 0.6280 16 6 5.0253 0.4316 2.1539 17 6 4.9678 1.0709 -0.2413 18 7 5.3171 0.4565 -1.3459 19 6 6.0185 1.3583 -2.0555 20 6 6.6402 1.1385 -3.4106 21 6 7.5703 2.2288 -3.9463 22 6 6.1788 2.0435 -4.5548 23 7 6.0657 2.4523 -1.3561 24 8 5.4681 2.3082 -0.3103 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6285 1.3984 -0.9275 29 1 1.3580 2.1320 0.0804 30 1 4.1535 2.7025 2.2323 31 1 3.7886 3.1899 0.5597 32 1 1.3725 6.4212 2.9745 33 1 5.3519 1.4373 2.4180 34 1 4.4424 0.0119 2.9737 35 1 5.8964 -0.1970 1.9689 36 1 6.8840 0.1043 -3.6539 37 1 7.7328 3.1048 -3.3186 38 1 8.4263 1.9121 -4.5421 39 1 6.1193 1.6048 -5.5508 40 1 5.4252 2.7975 -4.3274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:13 Heat of formation + Delta-G solvation = 127.268884 kcal Electronic energy + Delta-G solvation = -22162.759492 eV Core-core repulsion = 18982.952694 eV Total energy + Delta-G solvation = -3179.806798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.34837 -38.22003 -37.71351 -35.12514 -33.72635 -32.83729 -31.47258 -30.13091 -27.86564 -25.27039 -24.68855 -24.05511 -22.78191 -22.58325 -20.95333 -19.89095 -19.01030 -17.89382 -17.22559 -16.93819 -15.74718 -15.50550 -15.37936 -14.75114 -14.61437 -14.11735 -13.70176 -12.99256 -12.84830 -12.51762 -12.38208 -12.23472 -12.13602 -11.89043 -11.84692 -11.73079 -11.27675 -11.06699 -10.92517 -10.79197 -10.75430 -10.68047 -10.61641 -10.08737 -9.89889 -9.56078 -9.39297 -8.97813 -8.62089 -7.84930 -6.10131 -4.08563 1.36323 2.29506 2.66968 3.09510 3.28969 3.36140 3.40551 3.52597 3.67786 4.20180 4.39519 4.53221 4.59780 4.67026 4.74688 5.20189 5.20858 5.31119 5.34500 5.38768 5.43158 5.52519 5.62392 5.81853 5.82747 5.85350 5.89053 5.92717 6.05446 6.17727 6.23124 6.35788 6.40013 6.73942 6.79619 6.99411 7.20746 7.42533 7.63695 7.78613 8.39958 8.53538 8.97226 9.50747 11.02259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.006816 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.325924 B = 4106.916481 C = 5130.079449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C 0.078 3.922 4 N -0.495 5.495 5 C 0.148 3.852 6 C -0.512 4.512 7 H 0.084 0.916 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.868 3.132 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.263 1.263 14 C 0.165 3.835 15 H 0.119 0.881 16 C -0.147 4.147 17 C 0.168 3.832 18 N -0.487 5.487 19 C 0.190 3.810 20 C -0.074 4.074 21 C -0.160 4.160 22 C -0.158 4.158 23 N -0.392 5.392 24 O 0.089 5.911 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.028 0.972 29 H 0.103 0.897 30 H 0.042 0.958 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -10.768 -9.544 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.156 4.156 3 C -0.050 4.050 4 N -0.217 5.217 5 C 0.023 3.977 6 C -0.550 4.550 7 H 0.102 0.898 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.695 3.305 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.187 1.187 14 C 0.053 3.947 15 H 0.137 0.863 16 C -0.205 4.205 17 C -0.055 4.055 18 N -0.221 5.221 19 C -0.082 4.082 20 C -0.094 4.094 21 C -0.198 4.198 22 C -0.196 4.196 23 N -0.100 5.100 24 O 0.032 5.968 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.944 -10.366 -9.582 16.711 hybrid contribution 1.153 0.856 -0.628 1.567 sum 10.096 -9.510 -10.210 17.223 Atomic orbital electron populations 1.23764 0.95886 1.01543 1.01541 1.22831 0.95919 0.97856 0.98961 1.21327 0.96062 0.96960 0.90601 1.62420 1.09956 1.13653 1.35697 1.20552 0.98213 0.83237 0.95726 1.20919 0.95444 0.94859 1.43814 0.89823 1.24836 0.96257 0.97106 0.94636 1.69880 1.29333 1.09782 1.44438 0.86967 0.85376 0.79975 0.78212 1.20244 1.21057 1.18749 1.21070 0.88008 0.98270 0.87391 0.86302 1.21944 0.98785 1.03560 0.96220 1.30717 0.95213 0.81838 0.97682 1.71822 1.15800 1.30602 1.03896 1.24732 0.98779 0.86018 0.98684 1.19994 1.04391 0.98396 0.86599 1.23060 0.93891 0.99860 1.03000 1.23071 0.98283 1.01641 0.96640 1.74542 1.15686 1.23670 0.96134 1.85506 1.48814 1.32310 1.30131 0.88332 0.88972 0.88113 0.95386 0.87835 0.93979 0.98589 0.92555 0.91028 0.89442 0.92213 0.84913 0.87838 0.87594 0.87463 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.01 0.42 -2.38 16 2 C -0.14 -2.17 9.37 -36.03 -0.34 -2.50 16 3 C 0.08 1.46 5.14 -4.98 -0.03 1.44 16 4 N -0.50 -9.66 4.40 -230.92 -1.02 -10.67 16 5 C 0.15 3.42 2.78 -4.98 -0.01 3.41 16 6 C -0.51 -13.98 8.79 -34.44 -0.30 -14.28 16 7 H 0.08 2.47 7.55 -52.49 -0.40 2.08 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 10 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 14 C 0.17 2.69 2.82 -68.86 -0.19 2.49 16 15 H 0.12 1.70 7.01 -51.93 -0.36 1.33 16 16 C -0.15 -2.11 9.02 37.16 0.34 -1.77 16 17 C 0.17 3.00 5.51 -13.05 -0.07 2.93 16 18 N -0.49 -8.45 11.55 -9.87 -0.11 -8.56 16 19 C 0.19 3.19 7.74 -156.38 -1.21 1.98 16 20 C -0.07 -0.92 6.33 -91.77 -0.58 -1.51 16 21 C -0.16 -1.69 10.14 -26.74 -0.27 -1.96 16 22 C -0.16 -1.69 10.23 -26.73 -0.27 -1.97 16 23 N -0.39 -7.41 11.77 30.90 0.36 -7.05 16 24 O 0.09 1.78 8.80 18.11 0.16 1.94 16 25 H 0.10 1.53 7.84 -52.48 -0.41 1.12 16 26 H 0.09 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.10 1.41 7.29 -52.49 -0.38 1.03 16 28 H 0.03 0.54 6.90 -51.93 -0.36 0.18 16 29 H 0.10 2.21 6.23 -51.93 -0.32 1.89 16 30 H 0.04 0.97 4.96 -51.93 -0.26 0.71 16 31 H 0.00 -0.08 5.39 -51.93 -0.28 -0.36 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 33 H 0.07 1.14 6.24 -51.94 -0.32 0.82 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.26 7.91 -51.93 -0.41 0.85 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -30.78 328.91 -7.81 -38.59 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.63 Total: 2.19 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.63 Total: -12.11 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.01 Total: -52.39 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.16 Total: 1.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.78 -7.81 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.860 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds