Wall clock time and date at job start Mon Mar 30 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00099 * 2 1 4 4 N 1.46898 * 109.47690 * 124.48655 * 3 2 1 5 5 C 1.46892 * 111.00333 * 199.56190 * 4 3 2 6 6 C 1.50697 * 109.47264 * 66.04923 * 5 4 3 7 7 H 1.07997 * 120.00292 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00097 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00130 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00067 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46543 * 90.00465 * 10 8 6 12 12 H 1.48495 * 109.47248 * 210.00474 * 10 8 6 13 13 H 1.48498 * 109.47023 * 330.00952 * 10 8 6 14 14 C 1.46905 * 110.99751 * 75.60304 * 4 3 2 15 15 H 1.08995 * 109.47145 * 305.92452 * 14 4 3 16 16 C 1.53002 * 109.46868 * 185.91808 * 14 4 3 17 17 C 1.50699 * 109.46668 * 65.92405 * 14 4 3 18 18 N 1.31138 * 126.54963 * 235.64173 * 17 14 4 19 19 C 1.34491 * 105.61326 * 179.91748 * 18 17 14 20 20 C 1.50699 * 126.28563 * 180.12469 * 19 18 17 21 21 C 1.52992 * 117.50073 * 188.91095 * 20 19 18 22 22 C 1.52997 * 60.00434 * 252.51118 * 21 20 19 23 23 N 1.29940 * 107.42685 * 0.34928 * 19 18 17 24 24 O 1.21302 * 110.25182 * 359.77887 * 23 19 18 25 25 H 1.08008 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.07991 * 120.00178 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99865 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46894 * 244.49247 * 3 2 1 29 29 H 1.09001 * 109.47209 * 4.48512 * 3 2 1 30 30 H 1.09004 * 109.47053 * 186.04877 * 5 4 3 31 31 H 1.08995 * 109.47023 * 306.04453 * 5 4 3 32 32 H 0.97000 * 119.99922 * 179.97438 * 9 8 6 33 33 H 1.08988 * 109.47438 * 300.00462 * 16 14 4 34 34 H 1.08996 * 109.46767 * 60.00660 * 16 14 4 35 35 H 1.09006 * 109.46329 * 179.97438 * 16 14 4 36 36 H 1.09006 * 115.55343 * 334.62256 * 20 19 18 37 37 H 1.08997 * 117.49933 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.50524 * 145.02202 * 21 20 19 39 39 H 1.09001 * 117.49973 * 252.51020 * 22 21 20 40 40 H 1.09006 * 117.51782 * 107.47429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9876 1.3372 1.1415 5 6 3.3888 2.7149 1.4555 6 6 2.1907 3.4885 1.9424 7 1 1.2274 3.0052 2.0112 8 6 2.3242 4.8137 2.2989 9 7 1.2785 5.4890 2.7233 10 14 3.9902 5.6500 2.1792 11 1 4.1448 6.2545 0.8316 12 1 4.0863 6.7123 3.2123 13 1 5.0640 4.6478 2.3982 14 6 4.1619 0.4905 0.8921 15 1 3.8353 -0.5152 0.6280 16 6 5.0253 0.4316 2.1539 17 6 4.9678 1.0709 -0.2413 18 7 5.3171 0.4565 -1.3459 19 6 6.0185 1.3583 -2.0555 20 6 6.6402 1.1385 -3.4106 21 6 7.5703 2.2288 -3.9463 22 6 6.1788 2.0435 -4.5548 23 7 6.0657 2.4523 -1.3561 24 8 5.4681 2.3082 -0.3103 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6285 1.3984 -0.9275 29 1 1.3580 2.1320 0.0804 30 1 4.1535 2.7025 2.2323 31 1 3.7886 3.1899 0.5597 32 1 1.3725 6.4212 2.9745 33 1 5.3519 1.4373 2.4180 34 1 4.4424 0.0119 2.9737 35 1 5.8964 -0.1970 1.9689 36 1 6.8840 0.1043 -3.6539 37 1 7.7328 3.1048 -3.3186 38 1 8.4263 1.9121 -4.5421 39 1 6.1193 1.6048 -5.5508 40 1 5.4252 2.7975 -4.3274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292256431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:12 Heat of formation + Delta-G solvation = 105.808612 kcal Electronic energy + Delta-G solvation = -22163.690079 eV Core-core repulsion = 18982.952694 eV Total energy + Delta-G solvation = -3180.737385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.70541 -39.70364 -38.70832 -36.42054 -35.03671 -34.87031 -32.98572 -31.54922 -29.64263 -26.51961 -26.10885 -25.53517 -24.21397 -23.42289 -22.51860 -21.20456 -20.30134 -19.37179 -18.91830 -18.49703 -17.08791 -16.83952 -16.70238 -16.27016 -15.97389 -15.56519 -15.26600 -14.57020 -14.42928 -14.04895 -13.79427 -13.56225 -13.35602 -13.19838 -13.17453 -12.76414 -12.70961 -12.57625 -12.44333 -12.40161 -12.17609 -11.90473 -11.77200 -11.60912 -11.53498 -11.46979 -10.84389 -10.76323 -10.29642 -9.47042 -8.31312 -6.32881 -0.00664 1.02481 1.29421 1.32298 1.41366 1.41929 1.76087 2.29832 2.38550 2.71531 2.99886 3.03753 3.07674 3.59677 3.72773 3.88471 3.91529 3.97823 4.13796 4.23087 4.32676 4.41664 4.58020 4.60329 4.61477 4.73845 4.82171 4.87409 4.89378 4.96077 4.97585 4.98699 5.07661 5.08752 5.22217 5.50767 5.71507 5.82366 5.98673 6.08068 6.46163 6.73130 7.03598 7.29517 8.84666 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.006816 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.325924 B = 4106.916481 C = 5130.079449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C 0.084 3.916 4 N -0.500 5.500 5 C 0.162 3.838 6 C -0.510 4.510 7 H 0.048 0.952 8 C 0.021 3.979 9 N -0.941 5.941 10 Si 0.925 3.075 11 H -0.281 1.281 12 H -0.277 1.277 13 H -0.246 1.246 14 C 0.165 3.835 15 H 0.147 0.853 16 C -0.144 4.144 17 C 0.167 3.833 18 N -0.490 5.490 19 C 0.195 3.805 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.150 4.150 23 N -0.417 5.417 24 O 0.057 5.943 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.048 0.952 31 H -0.015 1.015 32 H 0.267 0.733 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -13.014 -10.776 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.166 4.166 3 C -0.043 4.043 4 N -0.222 5.222 5 C 0.036 3.964 6 C -0.548 4.548 7 H 0.066 0.934 8 C -0.178 4.178 9 N -0.581 5.581 10 Si 0.750 3.250 11 H -0.207 1.207 12 H -0.202 1.202 13 H -0.169 1.169 14 C 0.054 3.946 15 H 0.164 0.836 16 C -0.202 4.202 17 C -0.056 4.056 18 N -0.224 5.224 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.185 4.185 22 C -0.188 4.188 23 N -0.131 5.131 24 O 0.006 5.994 25 H 0.099 0.901 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.836 -12.631 -10.784 19.831 hybrid contribution 0.479 1.483 -0.325 1.592 sum 11.315 -11.147 -11.109 19.383 Atomic orbital electron populations 1.23961 0.95710 1.02341 0.99711 1.22800 0.96175 0.97046 1.00535 1.21192 0.95380 0.97756 0.90009 1.62332 1.11646 1.11842 1.36390 1.20231 0.96170 0.84929 0.95110 1.21149 0.95632 0.95209 1.42847 0.93363 1.25597 0.99631 0.97927 0.94603 1.70007 1.31546 1.10290 1.46272 0.86036 0.81637 0.79380 0.77962 1.20692 1.20186 1.16911 1.21324 0.86957 0.98288 0.88065 0.83573 1.21970 0.99633 1.03070 0.95506 1.30970 0.95058 0.81449 0.98101 1.71846 1.16064 1.30742 1.03732 1.25559 0.97389 0.85107 0.99703 1.20378 1.05847 1.00284 0.84965 1.23149 0.94907 0.98153 1.02324 1.23162 0.97823 1.00412 0.97423 1.74546 1.17125 1.24931 0.96471 1.85451 1.49796 1.33281 1.30915 0.90103 0.85593 0.85304 0.96242 0.91616 0.93377 0.99713 0.92403 0.92993 0.88139 0.89477 0.82551 0.89947 0.84113 0.84126 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 14.32 67.78 0.97 -4.10 16 2 C -0.15 -4.46 9.37 25.64 0.24 -4.22 16 3 C 0.08 3.22 5.14 85.56 0.44 3.66 16 4 N -0.50 -19.47 4.40 -884.49 -3.89 -23.36 16 5 C 0.16 7.60 2.78 85.56 0.24 7.84 16 6 C -0.51 -28.86 8.79 25.60 0.22 -28.63 16 7 H 0.05 3.01 7.55 -2.91 -0.02 2.99 16 8 C 0.02 1.21 5.47 84.66 0.46 1.67 16 9 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 10 Si 0.93 45.09 27.47 68.60 1.88 46.98 16 11 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -11.18 6.54 99.48 0.65 -10.52 16 14 C 0.17 5.12 2.82 44.17 0.12 5.24 16 15 H 0.15 3.73 7.01 -2.39 -0.02 3.72 16 16 C -0.14 -3.81 9.02 71.98 0.65 -3.16 16 17 C 0.17 5.80 5.51 88.38 0.49 6.28 16 18 N -0.49 -16.26 11.55 -303.21 -3.50 -19.77 16 19 C 0.19 6.33 7.74 138.46 1.07 7.40 16 20 C -0.10 -2.15 6.33 -11.54 -0.07 -2.22 16 21 C -0.15 -2.74 10.14 30.59 0.31 -2.43 16 22 C -0.15 -2.86 10.23 30.59 0.31 -2.55 16 23 N -0.42 -15.76 11.77 -60.33 -0.71 -16.47 16 24 O 0.06 2.27 8.80 74.87 0.66 2.93 16 25 H 0.08 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.13 2.72 8.06 -2.92 -0.02 2.70 16 27 H 0.13 3.19 7.29 -2.91 -0.02 3.17 16 28 H 0.02 0.77 6.90 -2.39 -0.02 0.75 16 29 H 0.07 2.98 6.23 -2.39 -0.01 2.97 16 30 H 0.05 2.21 4.96 -2.39 -0.01 2.20 16 31 H -0.01 -0.72 5.39 -2.39 -0.01 -0.74 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.05 1.59 6.24 -2.39 -0.01 1.57 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.16 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.08 1.91 7.91 -2.39 -0.02 1.90 16 38 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.14 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -69.54 328.91 1.18 -68.36 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.98 Total: 14.61 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.46 Total: -15.23 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -7.80 Total: -117.64 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.66 Total: 2.93 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -69.54 1.18 -68.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.166 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds