Wall clock time and date at job start Mon Mar 30 2020 02:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46840 * 2 1 4 4 C 1.52999 * 109.47098 * 120.00333 * 2 1 3 5 5 C 1.50692 * 109.47133 * 185.00138 * 4 2 1 6 6 H 1.07997 * 120.00329 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00354 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00447 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99821 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47259 * 89.99976 * 9 7 5 11 11 H 1.48500 * 109.47255 * 210.00338 * 9 7 5 12 12 H 1.48503 * 109.47046 * 330.00304 * 9 7 5 13 13 N 1.46905 * 109.47111 * 240.00190 * 2 1 3 14 14 C 1.47449 * 110.99618 * 305.93587 * 13 2 1 15 15 C 1.54320 * 107.23033 * 123.26139 * 14 13 2 16 16 C 1.55432 * 103.04783 * 22.27819 * 15 14 13 17 17 H 1.08996 * 111.00266 * 82.39128 * 16 15 14 18 18 C 1.50704 * 111.10598 * 206.29596 * 16 15 14 19 19 C 1.38269 * 119.98133 * 51.89941 * 18 16 15 20 20 C 1.38226 * 120.04699 * 179.72590 * 19 18 16 21 21 C 1.38226 * 120.02444 * 0.54830 * 20 19 18 22 22 C 1.38434 * 119.97409 * 359.72450 * 21 20 19 23 23 F 1.35097 * 120.02369 * 180.02562 * 22 21 20 24 24 C 1.38169 * 119.99115 * 232.17132 * 18 16 15 25 25 C 1.47840 * 110.99875 * 66.77568 * 13 2 1 26 26 H 1.09004 * 109.46985 * 186.45900 * 1 2 3 27 27 H 1.08993 * 109.47580 * 306.46145 * 1 2 3 28 28 H 1.09004 * 109.47123 * 66.46630 * 1 2 3 29 29 H 1.09002 * 109.47002 * 304.99882 * 4 2 1 30 30 H 1.09004 * 109.47062 * 65.00032 * 4 2 1 31 31 H 0.97004 * 120.00211 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.88318 * 242.65627 * 14 13 2 33 33 H 1.08992 * 109.89028 * 3.69013 * 14 13 2 34 34 H 1.09000 * 110.70744 * 140.66411 * 15 14 13 35 35 H 1.08996 * 110.70524 * 263.72125 * 15 14 13 36 36 H 1.07993 * 119.97959 * 359.97438 * 19 18 16 37 37 H 1.08005 * 119.99115 * 180.27259 * 20 19 18 38 38 H 1.08002 * 120.00818 * 179.70689 * 21 20 19 39 39 H 1.08003 * 120.00953 * 0.02912 * 24 18 16 40 40 H 1.08999 * 110.37804 * 332.46346 * 25 13 2 41 41 H 1.08995 * 110.37251 * 94.69476 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 5.5411 -1.1003 2.4134 9 14 3.3014 -2.1067 3.6965 10 1 3.1697 -3.5370 3.3193 11 1 4.0451 -1.9990 4.9773 12 1 1.9506 -1.5108 3.8568 13 7 2.0197 -0.6925 -1.1995 14 6 1.4341 -2.0414 -1.3068 15 6 0.7236 -2.1238 -2.6742 16 6 1.4294 -1.0150 -3.5039 17 1 2.3686 -1.3777 -3.9214 18 6 0.5251 -0.4910 -4.5896 19 6 -0.7521 -0.0626 -4.2781 20 6 -1.5806 0.4236 -5.2719 21 6 -1.1371 0.4714 -6.5802 22 6 0.1394 0.0375 -6.8941 23 9 0.5741 0.0843 -8.1723 24 6 0.9706 -0.4441 -5.8966 25 6 1.6832 0.0656 -2.4233 26 1 -0.3633 -1.0212 0.1156 27 1 -0.3634 0.6107 0.8264 28 1 -0.3633 0.4103 -0.9422 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 6.0254 -1.5065 3.1492 32 1 2.2218 -2.7929 -1.2525 33 1 0.7155 -2.1988 -0.5027 34 1 0.8767 -3.1022 -3.1298 35 1 -0.3403 -1.9116 -2.5691 36 1 -1.1012 -0.1041 -3.2570 37 1 -2.5766 0.7621 -5.0269 38 1 -1.7865 0.8469 -7.3573 39 1 1.9666 -0.7833 -6.1404 40 1 0.7848 0.6623 -2.2652 41 1 2.5163 0.7052 -2.7146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298056473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:04 Heat of formation + Delta-G solvation = -18.975293 kcal Electronic energy + Delta-G solvation = -21433.398673 eV Core-core repulsion = 18227.330290 eV Total energy + Delta-G solvation = -3206.068383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.06038 -40.04413 -38.40345 -34.59384 -32.41365 -31.29086 -30.61821 -29.05513 -27.80895 -27.60067 -23.52818 -22.99599 -22.56760 -21.53540 -20.16114 -18.62102 -17.46258 -16.68816 -16.54304 -16.32220 -15.78679 -15.75047 -15.07960 -14.39927 -14.17820 -13.62302 -13.56128 -13.33797 -13.12892 -12.75871 -12.47466 -12.38797 -12.21706 -11.92711 -11.69538 -11.59822 -11.38388 -11.15510 -11.06399 -10.82439 -10.71649 -10.35014 -10.02895 -9.75407 -9.52531 -9.13695 -9.04616 -8.79774 -8.42151 -7.52513 -5.90495 -3.84741 0.96014 1.01334 3.35294 3.37003 3.43112 3.44899 3.99933 4.34575 4.54158 4.56112 4.68201 4.82665 4.94432 4.94900 5.03115 5.18125 5.24190 5.43311 5.47736 5.61960 5.66048 5.68150 5.73670 5.84237 5.87425 5.92551 5.93562 5.96801 6.11761 6.15528 6.28663 6.38227 6.44332 6.48399 6.59161 6.70272 6.77624 7.11324 7.32681 7.67846 7.80715 7.95791 8.72485 9.22288 9.72363 11.23564 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.003683 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.405269 B = 7601.060862 C = 7925.827306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.491 4.491 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.498 5.498 14 C 0.042 3.958 15 C -0.132 4.132 16 C -0.064 4.064 17 H 0.094 0.906 18 C -0.032 4.032 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.164 4.164 22 C 0.098 3.902 23 F -0.142 7.142 24 C -0.151 4.151 25 C 0.048 3.952 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.047 0.953 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 1.193 -15.808 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.094 0.906 4 C -0.043 4.043 5 C -0.529 4.529 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.701 3.299 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.220 5.220 14 C -0.085 4.085 15 C -0.170 4.170 16 C -0.083 4.083 17 H 0.112 0.888 18 C -0.032 4.032 19 C -0.144 4.144 20 C -0.107 4.107 21 C -0.183 4.183 22 C 0.079 3.921 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.065 0.935 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.480 1.108 -15.671 21.365 hybrid contribution -1.181 -0.470 0.455 1.350 sum -15.661 0.638 -15.216 21.845 Atomic orbital electron populations 1.22612 0.99748 1.01503 1.00846 1.21832 0.89804 0.98711 0.91544 0.90626 1.19666 0.98048 0.94930 0.91646 1.21055 0.89405 1.33907 1.08572 0.90311 1.25012 0.94659 0.96321 0.97803 1.69913 1.06414 1.46202 1.32283 0.86903 0.80390 0.80618 0.82031 1.20572 1.21634 1.19343 1.63741 1.56340 1.01175 1.00792 1.22832 0.97751 0.92981 0.94965 1.22990 0.99312 0.98426 0.96316 1.21420 0.97538 0.96259 0.93060 0.88750 1.19669 0.94339 0.95952 0.93280 1.21127 0.93707 0.99678 0.99909 1.20989 0.99876 0.98042 0.91799 1.21105 0.95046 1.03968 0.98132 1.17698 0.93863 1.01754 0.78796 1.91493 1.89999 1.94396 1.36214 1.21093 1.00683 1.03064 0.92120 1.23157 0.99920 0.95495 0.89376 0.92745 0.92525 0.93565 0.96454 0.97007 0.93070 0.90533 0.92091 0.91012 0.91586 0.85382 0.85126 0.85033 0.84639 0.93476 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.56 37.16 0.32 -2.54 16 2 C 0.09 1.71 2.22 -67.71 -0.15 1.56 16 3 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 4 C -0.01 -0.13 3.43 -27.89 -0.10 -0.22 16 5 C -0.49 -13.85 9.39 -34.44 -0.32 -14.18 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.31 13.96 55.43 0.77 -27.53 16 9 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 N -0.50 -8.99 4.87 -223.29 -1.09 -10.08 16 14 C 0.04 0.68 5.57 -2.83 -0.02 0.67 16 15 C -0.13 -1.63 6.34 -24.75 -0.16 -1.79 16 16 C -0.06 -0.79 3.27 -89.47 -0.29 -1.08 16 17 H 0.09 1.18 7.96 -51.93 -0.41 0.77 16 18 C -0.03 -0.35 5.00 -104.63 -0.52 -0.88 16 19 C -0.13 -1.27 8.31 -39.57 -0.33 -1.60 16 20 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 21 C -0.16 -1.54 10.03 -39.51 -0.40 -1.93 16 22 C 0.10 1.07 7.30 -39.42 -0.29 0.79 16 23 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 24 C -0.15 -1.66 9.67 -39.52 -0.38 -2.04 16 25 C 0.05 0.71 5.89 -2.30 -0.01 0.69 16 26 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.61 6.19 -51.93 -0.32 0.29 16 29 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 30 H 0.01 0.27 6.19 -51.93 -0.32 -0.05 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.99 4.82 -51.93 -0.25 0.74 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.75 6.68 -51.93 -0.35 0.40 16 36 H 0.13 1.22 7.00 -52.49 -0.37 0.86 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.36 7.99 -52.48 -0.42 0.94 16 40 H 0.05 0.64 4.98 -51.93 -0.26 0.39 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -30.84 323.17 -9.16 -40.00 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.94 Total: -0.70 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.14 Total: -22.05 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.31 Total: -37.62 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.84 -9.16 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298056473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.028 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds