Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99922 * 2 1 4 4 N 1.46904 * 109.47045 * 125.58698 * 3 2 1 5 5 C 1.46899 * 110.99803 * 294.21966 * 4 3 2 6 6 C 1.50698 * 109.47248 * 294.20328 * 5 4 3 7 7 C 1.38220 * 120.01431 * 106.89676 * 6 5 4 8 8 C 1.38223 * 120.02797 * 179.97438 * 7 6 5 9 9 C 1.38273 * 120.05067 * 0.02562 * 8 7 6 10 10 C 1.38170 * 120.02385 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01294 * 286.88219 * 6 5 4 12 12 F 1.35095 * 120.02829 * 359.97438 * 11 6 5 13 13 C 1.46893 * 110.99717 * 58.17209 * 4 3 2 14 14 H 1.09005 * 109.47543 * 298.33748 * 13 4 3 15 15 C 1.53000 * 109.46900 * 178.33988 * 13 4 3 16 16 C 1.52998 * 109.47224 * 58.33934 * 13 4 3 17 17 C 1.50700 * 109.47130 * 184.02304 * 16 13 4 18 18 H 1.08000 * 120.00091 * 5.13156 * 17 16 13 19 19 C 1.37888 * 120.00060 * 185.13800 * 17 16 13 20 20 N 1.31510 * 119.99652 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99736 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46940 * 90.00380 * 21 19 17 23 23 H 1.48498 * 109.47337 * 209.99947 * 21 19 17 24 24 H 1.48496 * 109.47635 * 330.00252 * 21 19 17 25 25 H 1.08003 * 119.99553 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99880 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47043 * 5.58643 * 3 2 1 29 29 H 1.08997 * 109.47257 * 245.58907 * 3 2 1 30 30 H 1.08998 * 109.46960 * 174.20856 * 5 4 3 31 31 H 1.08996 * 109.47586 * 54.20314 * 5 4 3 32 32 H 1.07999 * 119.98579 * 359.96406 * 7 6 5 33 33 H 1.07996 * 119.97376 * 179.72854 * 8 7 6 34 34 H 1.07997 * 119.98451 * 179.97438 * 9 8 7 35 35 H 1.08000 * 120.00948 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47044 * 299.99719 * 15 13 4 37 37 H 1.08994 * 109.47118 * 59.99794 * 15 13 4 38 38 H 1.09006 * 109.47109 * 180.02562 * 15 13 4 39 39 H 1.09006 * 109.47185 * 304.02248 * 16 13 4 40 40 H 1.09004 * 109.47201 * 64.02323 * 16 13 4 41 41 H 0.97001 * 119.99452 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0064 1.3262 1.1264 5 6 2.2927 1.3284 2.4103 6 6 1.5237 2.6162 2.5554 7 6 0.1473 2.6176 2.4292 8 6 -0.5584 3.7986 2.5628 9 6 0.1116 4.9800 2.8223 10 6 1.4875 4.9811 2.9489 11 6 2.1956 3.7984 2.8155 12 9 3.5408 3.7982 2.9399 13 6 3.9454 0.1993 1.0479 14 1 3.3929 -0.7387 1.1038 15 6 4.9352 0.2783 2.2120 16 6 4.7092 0.2631 -0.2762 17 6 5.6004 -0.9457 -0.4009 18 1 5.5593 -1.7261 0.3446 19 6 6.4683 -1.0555 -1.4667 20 7 7.2456 -2.1107 -1.5756 21 14 6.5390 0.2940 -2.7563 22 1 7.5494 1.3068 -2.3581 23 1 6.9167 -0.2931 -4.0670 24 1 5.2072 0.9411 -2.8693 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3594 2.1311 0.1000 29 1 2.6130 1.4074 -0.9358 30 1 3.0110 1.2403 3.2254 31 1 1.6010 0.4866 2.4430 32 1 -0.3771 1.6956 2.2260 33 1 -1.6334 3.7994 2.4597 34 1 -0.4407 5.9022 2.9261 35 1 2.0106 5.9039 3.1519 36 1 5.4877 1.2162 2.1560 37 1 4.3910 0.2328 3.1552 38 1 5.6323 -0.5577 2.1535 39 1 4.0004 0.2789 -1.1042 40 1 5.3177 1.1672 -0.3015 41 1 7.8564 -2.1877 -2.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298078041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = 4.055201 kcal Electronic energy + Delta-G solvation = -21972.020026 eV Core-core repulsion = 18766.950321 eV Total energy + Delta-G solvation = -3205.069705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.64270 -39.48131 -37.96943 -33.88382 -33.02182 -31.98704 -30.60667 -29.87575 -28.00364 -26.17961 -24.06180 -22.81853 -22.68189 -21.03461 -20.33834 -18.24075 -17.40999 -17.05085 -16.35275 -15.92558 -15.63421 -15.22476 -14.94760 -14.48670 -14.18249 -13.99147 -13.63228 -13.13544 -13.04083 -12.87239 -12.67306 -12.36001 -12.15108 -11.85048 -11.55808 -11.49604 -11.16936 -11.01813 -10.86263 -10.77846 -10.52116 -10.01646 -9.78191 -9.66231 -9.32365 -9.04399 -8.97831 -8.60564 -8.49813 -7.79978 -6.02450 -3.99480 1.12912 1.15728 2.43693 3.34200 3.41301 3.46028 3.51674 4.34022 4.44229 4.48168 4.71598 4.73526 4.91020 5.11579 5.16595 5.29761 5.31936 5.37242 5.54747 5.63884 5.71086 5.83051 5.93686 5.98715 6.03778 6.12511 6.16888 6.27434 6.29716 6.30645 6.35845 6.64456 6.77967 6.81175 6.86491 6.91551 7.07516 7.17654 7.35766 7.60481 7.65748 7.88414 8.55277 9.01799 9.60661 11.10774 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.005076 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.642297 B = 5514.609356 C = 5927.715991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.075 3.925 4 N -0.523 5.523 5 C 0.085 3.915 6 C -0.105 4.105 7 C -0.088 4.088 8 C -0.137 4.137 9 C -0.097 4.097 10 C -0.162 4.162 11 C 0.124 3.876 12 F -0.128 7.128 13 C 0.093 3.907 14 H 0.038 0.962 15 C -0.134 4.134 16 C -0.003 4.003 17 C -0.515 4.515 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.266 1.266 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.021 0.979 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.308 11.786 8.756 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.191 4.191 3 C -0.053 4.053 4 N -0.245 5.245 5 C -0.042 4.042 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.155 4.155 9 C -0.116 4.116 10 C -0.181 4.181 11 C 0.104 3.896 12 F -0.106 7.106 13 C -0.013 4.013 14 H 0.056 0.944 15 C -0.192 4.192 16 C -0.041 4.041 17 C -0.553 4.553 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.191 1.191 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.797 12.134 8.625 21.706 hybrid contribution -0.118 -0.139 -0.770 0.791 sum -15.915 11.995 7.855 21.422 Atomic orbital electron populations 1.23750 0.95884 1.01138 1.03271 1.23866 0.96532 1.01018 0.97636 1.21447 0.94174 0.93575 0.96077 1.62431 1.16118 1.45867 1.00123 1.21061 0.96413 0.92239 0.94516 1.20003 0.94152 0.94968 1.01507 1.21030 0.92684 0.98659 0.98337 1.21128 1.00082 0.92560 1.01739 1.20939 0.93321 0.98382 0.98921 1.21153 0.95072 0.97227 1.04621 1.17547 0.77497 0.93941 1.00595 1.91537 1.29013 1.97173 1.92865 1.21649 0.91857 0.89405 0.98415 0.94380 1.21820 0.99032 1.03021 0.95299 1.19640 0.95328 0.97660 0.91436 1.21064 1.20003 1.04537 1.09708 0.90974 1.24969 0.95137 0.95445 0.97706 1.69909 1.24482 1.28640 1.31287 0.86802 0.78982 0.82515 0.81129 1.20270 1.21591 1.19089 0.89009 0.89011 0.86647 0.91145 0.89087 0.89194 0.93593 0.85340 0.85726 0.85487 0.85064 0.92564 0.94745 0.90903 0.96603 0.96111 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 13.99 29.01 0.41 -2.10 16 2 C -0.17 -2.57 7.66 -36.03 -0.28 -2.84 16 3 C 0.07 1.21 5.20 -4.97 -0.03 1.18 16 4 N -0.52 -9.03 4.57 -229.53 -1.05 -10.08 16 5 C 0.09 1.26 4.40 -4.98 -0.02 1.23 16 6 C -0.10 -1.39 4.37 -104.55 -0.46 -1.85 16 7 C -0.09 -0.97 9.08 -39.59 -0.36 -1.33 16 8 C -0.14 -1.28 10.04 -39.57 -0.40 -1.67 16 9 C -0.10 -0.90 10.04 -39.59 -0.40 -1.30 16 10 C -0.16 -1.80 10.03 -39.51 -0.40 -2.19 16 11 C 0.12 1.70 7.25 -39.42 -0.29 1.42 16 12 F -0.13 -2.03 16.79 2.25 0.04 -1.99 16 13 C 0.09 1.86 1.72 -67.72 -0.12 1.74 16 14 H 0.04 0.78 6.42 -51.93 -0.33 0.44 16 15 C -0.13 -2.57 8.72 37.16 0.32 -2.25 16 16 C 0.00 -0.07 3.36 -27.88 -0.09 -0.16 16 17 C -0.51 -14.37 8.85 -34.44 -0.30 -14.67 16 18 H 0.07 2.15 7.43 -52.49 -0.39 1.76 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 21 Si 0.88 22.04 27.37 -169.99 -4.65 17.39 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.27 -6.46 6.69 56.52 0.38 -6.08 16 25 H 0.09 1.03 8.06 -52.48 -0.42 0.61 16 26 H 0.09 1.01 7.70 -52.49 -0.40 0.60 16 27 H 0.12 1.95 6.75 -52.49 -0.35 1.60 16 28 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 29 H 0.09 1.64 6.29 -51.93 -0.33 1.32 16 30 H 0.09 1.36 5.74 -51.93 -0.30 1.06 16 31 H 0.05 0.65 6.90 -51.93 -0.36 0.29 16 32 H 0.13 1.27 7.51 -52.49 -0.39 0.87 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.56 6.16 -51.93 -0.32 0.24 16 38 H 0.07 1.52 6.99 -51.93 -0.36 1.16 16 39 H 0.02 0.38 5.61 -51.93 -0.29 0.09 16 40 H 0.02 0.51 7.29 -51.93 -0.38 0.13 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.31 329.54 -8.24 -38.54 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.81 Total: 1.09 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -2.50 Total: -22.91 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.09 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.65 Total: 17.39 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.31 -8.24 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298078041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.596 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds