Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50705 * 119.99826 * 2 1 4 4 N 1.46897 * 109.47435 * 125.09783 * 3 2 1 5 5 C 1.46900 * 110.99713 * 75.72350 * 4 3 2 6 6 C 1.50702 * 109.47219 * 199.48796 * 5 4 3 7 7 C 1.38215 * 120.01327 * 254.75122 * 6 5 4 8 8 C 1.38224 * 120.02034 * 180.02562 * 7 6 5 9 9 C 1.38259 * 120.05579 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.02898 * 359.97438 * 9 8 7 11 11 C 1.38440 * 120.00906 * 74.76948 * 6 5 4 12 12 F 1.35103 * 120.02735 * 359.96658 * 11 6 5 13 13 C 1.46897 * 110.99913 * 199.67771 * 4 3 2 14 14 H 1.09005 * 109.47164 * 186.04948 * 13 4 3 15 15 C 1.53001 * 109.47038 * 306.04342 * 13 4 3 16 16 C 1.53001 * 109.47312 * 66.04767 * 13 4 3 17 17 C 1.50701 * 109.46747 * 64.99865 * 16 13 4 18 18 H 1.07994 * 120.00239 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99574 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46954 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46571 * 120.00118 * 21 19 17 24 24 H 1.48494 * 109.47195 * 240.00111 * 21 19 17 25 25 H 1.07995 * 120.00040 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99597 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00040 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47182 * 5.09626 * 3 2 1 29 29 H 1.09001 * 109.46634 * 245.10492 * 3 2 1 30 30 H 1.09006 * 109.46985 * 79.49360 * 5 4 3 31 31 H 1.08996 * 109.47573 * 319.49294 * 5 4 3 32 32 H 1.07991 * 119.98962 * 0.04343 * 7 6 5 33 33 H 1.08006 * 119.97489 * 180.27921 * 8 7 6 34 34 H 1.08007 * 119.98907 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.01849 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.46995 * 60.00871 * 15 13 4 37 37 H 1.09000 * 109.46945 * 180.02562 * 15 13 4 38 38 H 1.08999 * 109.47533 * 300.00107 * 15 13 4 39 39 H 1.08996 * 109.46909 * 184.99931 * 16 13 4 40 40 H 1.08999 * 109.46646 * 305.00084 * 16 13 4 41 41 H 0.97004 * 120.00372 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9980 1.3312 1.1331 5 6 4.1713 0.4882 0.8672 6 6 4.8516 0.1491 2.1685 7 6 6.0368 0.7717 2.5119 8 6 6.6611 0.4604 3.7051 9 6 6.1012 -0.4744 4.5563 10 6 4.9164 -1.0982 4.2151 11 6 4.2897 -0.7866 3.0202 12 9 3.1310 -1.3956 2.6857 13 6 3.4000 2.7075 1.4525 14 1 4.1718 2.6913 2.2220 15 6 3.9485 3.3835 0.1943 16 6 2.1869 3.4877 1.9631 17 6 1.7218 2.8951 3.2684 18 1 2.2393 2.0467 3.6911 19 6 0.6355 3.4362 3.9228 20 7 0.0051 4.4690 3.4077 21 14 0.0585 2.7013 5.5403 22 1 0.9300 1.5545 5.9018 23 1 0.1308 3.7328 6.6063 24 1 -1.3435 2.2329 5.3990 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3587 2.1317 0.0913 29 1 2.6198 1.4035 -0.9322 30 1 4.8669 1.0264 0.2232 31 1 3.8546 -0.4300 0.3727 32 1 6.4751 1.5019 1.8478 33 1 7.5849 0.9507 3.9748 34 1 6.5902 -0.7172 5.4882 35 1 4.4791 -1.8280 4.8803 36 1 3.1767 3.3998 -0.5752 37 1 4.2472 4.4047 0.4313 38 1 4.8127 2.8278 -0.1695 39 1 2.4639 4.5308 2.1158 40 1 1.3824 3.4288 1.2302 41 1 -0.7594 4.8495 3.8679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298078046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -14.415935 kcal Electronic energy + Delta-G solvation = -22359.796012 eV Core-core repulsion = 19153.925338 eV Total energy + Delta-G solvation = -3205.870674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.66934 -40.38247 -39.03052 -35.34408 -34.53984 -33.31912 -31.48375 -30.92406 -29.13322 -27.36833 -25.76638 -24.59949 -23.57468 -22.37795 -21.04614 -20.00871 -18.38735 -18.28530 -17.27630 -16.86820 -16.84604 -16.54084 -16.25553 -16.01579 -15.64463 -15.03963 -14.63285 -14.54079 -14.12345 -13.88534 -13.72539 -13.68145 -13.47132 -13.13959 -12.99814 -12.87915 -12.57934 -12.45628 -12.37762 -12.27674 -11.90034 -11.80429 -11.58612 -11.08534 -11.01024 -10.46747 -10.21351 -9.81467 -9.45395 -8.86904 -8.09754 -6.11958 0.34163 0.37531 1.35487 1.37684 1.47215 1.50186 2.45856 2.71820 3.22202 3.37494 3.53911 3.82287 3.89162 4.06024 4.18645 4.24351 4.33319 4.39211 4.41435 4.51916 4.54186 4.56948 4.66379 4.73008 4.86515 5.02442 5.06364 5.10459 5.21044 5.25238 5.25602 5.37232 5.48043 5.52715 5.56261 5.71775 5.77754 5.91359 6.01223 6.08786 6.34540 6.43103 6.56135 7.00913 7.52838 9.02291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.007858 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.457232 B = 3562.397482 C = 4217.935826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.085 3.915 4 N -0.522 5.522 5 C 0.092 3.908 6 C -0.118 4.118 7 C -0.093 4.093 8 C -0.132 4.132 9 C -0.095 4.095 10 C -0.174 4.174 11 C 0.091 3.909 12 F -0.150 7.150 13 C 0.097 3.903 14 H 0.065 0.935 15 C -0.175 4.175 16 C 0.037 3.963 17 C -0.484 4.484 18 H 0.048 0.952 19 C -0.001 4.001 20 N -0.937 5.937 21 Si 0.944 3.056 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.284 1.284 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.071 0.929 39 H -0.008 1.008 40 H -0.003 1.003 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.600 -10.165 -4.306 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.158 4.158 3 C -0.042 4.042 4 N -0.245 5.245 5 C -0.035 4.035 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.149 4.149 9 C -0.113 4.113 10 C -0.193 4.193 11 C 0.072 3.928 12 F -0.129 7.129 13 C -0.011 4.011 14 H 0.084 0.916 15 C -0.234 4.234 16 C 0.000 4.000 17 C -0.523 4.523 18 H 0.066 0.934 19 C -0.197 4.197 20 N -0.580 5.580 21 Si 0.771 3.229 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.211 1.211 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.011 0.989 40 H 0.015 0.985 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.173 -10.269 -3.883 17.148 hybrid contribution -0.893 0.151 0.248 0.939 sum 12.280 -10.118 -3.635 16.321 Atomic orbital electron populations 1.23828 0.96130 1.01689 1.01503 1.22862 0.95964 0.97991 0.98936 1.21167 0.95193 0.95991 0.91841 1.61949 1.13642 1.10337 1.38540 1.21040 0.91842 0.97869 0.92783 1.20025 0.96806 0.97227 0.97908 1.21227 0.93702 0.98312 0.97873 1.21522 1.01437 0.98133 0.93844 1.21329 0.94063 0.95450 1.00450 1.21399 0.98249 1.03785 0.95835 1.17928 0.83090 0.95818 0.95992 1.91444 1.47218 1.81595 1.92608 1.21607 0.96992 0.86839 0.95656 0.91641 1.22413 1.01073 1.01346 0.98581 1.19064 0.92677 0.93322 0.94946 1.21381 1.12044 1.12955 1.05921 0.93395 1.25710 0.97365 0.95741 1.00857 1.70075 1.22078 1.25134 1.40714 0.85702 0.77961 0.78472 0.80774 1.19628 1.20475 1.21062 0.90107 0.87026 0.86949 0.92178 0.92762 0.91681 0.90151 0.83712 0.82545 0.82431 0.84349 0.93050 0.92319 0.90979 0.98936 0.98465 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.46 14.32 67.78 0.97 -5.49 16 2 C -0.14 -4.67 9.33 25.64 0.24 -4.43 16 3 C 0.08 3.03 4.00 85.56 0.34 3.37 16 4 N -0.52 -19.60 4.01 -880.04 -3.53 -23.13 16 5 C 0.09 2.76 4.51 85.56 0.39 3.15 16 6 C -0.12 -3.62 4.81 -19.82 -0.10 -3.72 16 7 C -0.09 -2.32 9.00 22.26 0.20 -2.12 16 8 C -0.13 -2.82 10.04 22.27 0.22 -2.60 16 9 C -0.09 -2.12 10.04 22.26 0.22 -1.90 16 10 C -0.17 -4.87 10.03 22.31 0.22 -4.65 16 11 C 0.09 3.05 7.25 22.38 0.16 3.21 16 12 F -0.15 -5.64 16.76 44.97 0.75 -4.89 16 13 C 0.10 3.88 2.17 44.92 0.10 3.98 16 14 H 0.07 2.69 6.88 -2.38 -0.02 2.68 16 15 C -0.18 -5.57 8.54 71.98 0.62 -4.95 16 16 C 0.04 1.93 4.39 29.85 0.13 2.06 16 17 C -0.48 -28.12 8.84 25.60 0.23 -27.89 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 20 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 21 Si 0.94 47.22 29.54 68.60 2.03 49.25 16 22 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 25 H 0.08 2.94 7.84 -2.91 -0.02 2.92 16 26 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 27 H 0.11 3.44 7.28 -2.91 -0.02 3.42 16 28 H 0.06 2.53 5.45 -2.38 -0.01 2.52 16 29 H 0.05 1.65 7.32 -2.39 -0.02 1.63 16 30 H 0.07 1.66 5.99 -2.38 -0.01 1.64 16 31 H 0.08 2.32 6.76 -2.39 -0.02 2.30 16 32 H 0.15 2.96 8.00 -2.92 -0.02 2.93 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.05 1.64 6.76 -2.39 -0.02 1.62 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.84 6.45 -2.39 -0.02 1.82 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.00 -0.16 6.08 -2.39 -0.01 -0.17 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -68.84 337.03 4.95 -63.89 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.00 Total: 14.39 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.41 Total: -41.55 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.24 Total: -81.09 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.75 Total: -4.89 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -68.84 4.95 -63.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298078046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds