Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00029 * 2 1 3 5 5 C 1.50697 * 109.47174 * 65.53043 * 4 2 1 6 6 H 1.07995 * 120.00134 * 5.04880 * 5 4 2 7 7 C 1.37883 * 120.00189 * 185.04616 * 5 4 2 8 8 N 1.31512 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47114 * 60.00185 * 9 7 5 11 11 H 1.48503 * 109.47217 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47140 * 300.00245 * 9 7 5 13 13 N 1.46900 * 109.47070 * 120.00236 * 2 1 3 14 14 C 1.47902 * 110.99958 * 182.21552 * 13 2 1 15 15 C 1.53994 * 107.05772 * 145.84249 * 14 13 2 16 16 C 1.54598 * 105.13790 * 358.77472 * 15 14 13 17 17 H 1.09003 * 110.72166 * 96.57993 * 16 15 14 18 18 C 1.50704 * 110.72013 * 219.68121 * 16 15 14 19 19 C 1.38219 * 120.01196 * 58.55192 * 18 16 15 20 20 C 1.38220 * 120.02338 * 179.71722 * 19 18 16 21 21 C 1.38264 * 120.05244 * 0.02562 * 20 19 18 22 22 C 1.38173 * 120.02516 * 359.97438 * 21 20 19 23 23 C 1.38440 * 120.00912 * 238.26852 * 18 16 15 24 24 F 1.35096 * 120.02930 * 0.26153 * 23 18 16 25 25 C 1.48531 * 111.00085 * 299.61148 * 13 2 1 26 26 H 1.09000 * 109.46839 * 300.00370 * 1 2 3 27 27 H 1.09000 * 109.46769 * 59.99613 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47272 * 185.52865 * 4 2 1 30 30 H 1.09000 * 109.47497 * 305.53262 * 4 2 1 31 31 H 0.97006 * 119.99974 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.91439 * 26.48911 * 14 13 2 33 33 H 1.09001 * 109.91897 * 265.19933 * 14 13 2 34 34 H 1.09001 * 110.31003 * 239.85861 * 15 14 13 35 35 H 1.09000 * 110.38783 * 117.73178 * 15 14 13 36 36 H 1.07999 * 119.98441 * 359.70097 * 19 18 16 37 37 H 1.08003 * 119.97091 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.98524 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.01188 * 179.97438 * 22 21 20 40 40 H 1.09007 * 110.66391 * 81.84150 * 25 13 2 41 41 H 1.09006 * 110.66559 * 318.71885 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6525 0.0638 -2.4759 6 1 1.1703 1.0245 -2.3721 7 6 1.9137 -0.4445 -3.7307 8 7 2.5006 -1.6146 -3.8571 9 14 1.4328 0.5283 -5.2512 10 1 2.1319 1.8385 -5.2422 11 1 1.8192 -0.2311 -6.4674 12 1 -0.0354 0.7507 -5.2526 13 7 2.0197 -0.6925 1.1994 14 6 3.4972 -0.6662 1.2606 15 6 3.8862 -0.5717 2.7476 16 6 2.5442 -0.5148 3.5131 17 1 2.2620 -1.5050 3.8709 18 6 2.6248 0.4611 4.6586 19 6 2.9344 1.7864 4.4173 20 6 3.0026 2.6829 5.4671 21 6 2.7618 2.2552 6.7597 22 6 2.4521 0.9308 7.0033 23 6 2.3829 0.0318 5.9523 24 9 2.0797 -1.2632 6.1893 25 6 1.5511 -0.0137 2.4346 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1255 -0.8078 -1.2012 30 1 1.5980 -1.7163 -1.3002 31 1 2.6840 -1.9724 -4.7399 32 1 3.8757 0.2024 0.7218 33 1 3.9032 -1.5806 0.8279 34 1 4.4648 0.3338 2.9305 35 1 4.4559 -1.4512 3.0477 36 1 3.1234 2.1214 3.4081 37 1 3.2443 3.7184 5.2775 38 1 2.8158 2.9565 7.5792 39 1 2.2644 0.5968 8.0131 40 1 0.5330 -0.3177 2.6781 41 1 1.6149 1.0691 2.3263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299441504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -46.265949 kcal Electronic energy + Delta-G solvation = -21353.918285 eV Core-core repulsion = 18146.666491 eV Total energy + Delta-G solvation = -3207.251794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88505 -40.87395 -39.34738 -36.29905 -34.44497 -32.50138 -31.42721 -30.45082 -29.07923 -28.37006 -25.56539 -24.16759 -23.29095 -22.77459 -21.06506 -20.62694 -18.68074 -18.58784 -17.57065 -16.99906 -16.68885 -16.55816 -16.42023 -15.82033 -15.26782 -15.06685 -14.93619 -14.32702 -14.22581 -14.08082 -13.84022 -13.56402 -13.43217 -13.26550 -12.86891 -12.75238 -12.69503 -12.54128 -12.38164 -12.30967 -12.06748 -11.77424 -11.69020 -11.52612 -11.21436 -11.07719 -10.53195 -9.87518 -9.56546 -9.26501 -8.17824 -6.28146 0.21081 0.27236 1.40196 1.43215 1.50910 2.41008 2.64140 3.04781 3.15536 3.32579 3.58688 3.70104 3.81668 3.93256 4.14504 4.15088 4.28998 4.33357 4.35088 4.43446 4.44529 4.60240 4.66459 4.70265 4.82315 4.97636 4.99068 5.04658 5.05680 5.12663 5.17212 5.22021 5.27475 5.40010 5.46307 5.48199 5.52147 5.69011 5.78824 5.97686 6.05829 6.17716 6.37035 6.87881 7.40086 8.94248 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.003527 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.022416 B = 7936.110043 C = 8165.020955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.089 3.911 3 H 0.026 0.974 4 C 0.043 3.957 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.529 5.529 14 C 0.041 3.959 15 C -0.109 4.109 16 C -0.049 4.049 17 H 0.082 0.918 18 C -0.112 4.112 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.091 4.091 22 C -0.155 4.155 23 C 0.076 3.924 24 F -0.151 7.151 25 C 0.051 3.949 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.044 0.956 29 H -0.012 1.012 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.080 0.920 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 9.175 22.435 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.019 4.019 3 H 0.044 0.956 4 C 0.006 3.994 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.253 5.253 14 C -0.087 4.087 15 C -0.147 4.147 16 C -0.068 4.068 17 H 0.101 0.899 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.173 4.173 23 C 0.057 3.943 24 F -0.130 7.130 25 C -0.077 4.077 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.098 0.902 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.900 8.463 22.267 23.838 hybrid contribution 0.157 0.314 -1.269 1.317 sum 1.057 8.777 20.998 22.783 Atomic orbital electron populations 1.21631 0.93960 1.01262 1.01089 1.21740 0.96115 0.94254 0.89796 0.95561 1.18932 0.94209 0.94741 0.91529 1.21546 1.38975 1.04842 0.91835 0.92024 1.25948 0.95149 0.95984 1.02642 1.70115 1.43561 1.19462 1.24228 0.85533 0.79102 0.78632 0.77981 1.19138 1.21059 1.19096 1.64755 1.07573 1.50976 1.02021 1.22738 0.88699 1.00424 0.96826 1.22472 0.96414 1.03359 0.92460 1.20880 0.95862 0.97798 0.92282 0.89932 1.19799 1.03086 0.95977 0.92490 1.21075 0.98317 0.91497 1.00615 1.21549 0.99413 1.00929 0.92280 1.21398 0.96755 0.94739 0.98028 1.21425 1.03005 0.94001 0.98887 1.17873 1.03375 0.78772 0.94306 1.91450 1.90947 1.35410 1.95165 1.23261 0.98931 0.96845 0.88620 0.91878 0.92621 0.93711 0.99335 0.99115 0.92892 0.94599 0.92267 0.89853 0.90247 0.85091 0.82844 0.81911 0.83072 0.90206 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.88 71.98 0.64 -4.11 16 2 C 0.09 3.82 1.77 44.92 0.08 3.90 16 3 H 0.03 1.13 7.99 -2.39 -0.02 1.12 16 4 C 0.04 2.35 4.48 29.85 0.13 2.48 16 5 C -0.53 -30.39 8.31 25.60 0.21 -30.17 16 6 H 0.06 3.34 7.29 -2.91 -0.02 3.32 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.53 -19.92 5.11 -857.85 -4.38 -24.30 16 14 C 0.04 1.45 5.38 86.45 0.47 1.91 16 15 C -0.11 -2.91 6.41 31.47 0.20 -2.71 16 16 C -0.05 -1.31 3.25 -10.34 -0.03 -1.34 16 17 H 0.08 2.36 7.22 -2.39 -0.02 2.34 16 18 C -0.11 -2.55 4.94 -19.82 -0.10 -2.65 16 19 C -0.10 -1.85 8.15 22.26 0.18 -1.67 16 20 C -0.12 -1.75 10.04 22.27 0.22 -1.52 16 21 C -0.09 -1.15 10.04 22.26 0.22 -0.92 16 22 C -0.15 -2.51 10.03 22.31 0.22 -2.29 16 23 C 0.08 1.68 7.25 22.38 0.16 1.84 16 24 F -0.15 -3.83 16.24 44.97 0.73 -3.10 16 25 C 0.05 1.52 4.81 86.65 0.42 1.94 16 26 H 0.06 2.02 6.94 -2.39 -0.02 2.01 16 27 H 0.05 2.26 7.10 -2.39 -0.02 2.24 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H -0.01 -0.68 6.99 -2.38 -0.02 -0.70 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 32 H 0.04 1.32 7.63 -2.39 -0.02 1.30 16 33 H 0.06 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.08 1.95 7.05 -2.39 -0.02 1.93 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.13 2.48 7.27 -2.91 -0.02 2.46 16 37 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.08 2.35 7.66 -2.38 -0.02 2.33 16 41 H 0.05 1.46 6.68 -2.38 -0.02 1.45 16 Total: -1.00 -66.90 329.52 3.16 -63.74 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.00 Total: 9.45 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.49 Total: -34.83 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -4.10 Total: -81.76 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.73 Total: -3.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.90 3.16 -63.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.477 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds