Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.52999 * 109.47586 * 120.00296 * 2 1 3 5 5 C 1.50701 * 109.47065 * 183.07244 * 4 2 1 6 6 H 1.07991 * 120.00144 * 1.33182 * 5 4 2 7 7 C 1.37879 * 119.99591 * 181.32491 * 5 4 2 8 8 N 1.31512 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46957 * 60.00532 * 9 7 5 11 11 H 1.48500 * 109.47299 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47292 * 300.00579 * 9 7 5 13 13 N 1.46910 * 109.46975 * 240.00664 * 2 1 3 14 14 C 1.47903 * 110.99548 * 296.79931 * 13 2 1 15 15 C 1.53994 * 107.05579 * 145.84228 * 14 13 2 16 16 C 1.54594 * 105.13811 * 358.77768 * 15 14 13 17 17 H 1.09004 * 110.72518 * 96.57625 * 16 15 14 18 18 C 1.50707 * 110.72308 * 219.68092 * 16 15 14 19 19 C 1.38217 * 120.01275 * 56.14590 * 18 16 15 20 20 C 1.38214 * 120.02565 * 180.02562 * 19 18 16 21 21 C 1.38269 * 120.05478 * 0.02562 * 20 19 18 22 22 C 1.38170 * 120.02063 * 0.02562 * 21 20 19 23 23 C 1.38441 * 120.01129 * 236.17433 * 18 16 15 24 24 F 1.35098 * 120.02639 * 359.97438 * 23 18 16 25 25 C 1.48730 * 111.04212 * 54.37503 * 13 2 1 26 26 H 1.08998 * 109.46539 * 292.54552 * 1 2 3 27 27 H 1.08997 * 109.47302 * 52.54604 * 1 2 3 28 28 H 1.08997 * 109.46653 * 172.54987 * 1 2 3 29 29 H 1.09000 * 109.47041 * 303.07769 * 4 2 1 30 30 H 1.09005 * 109.47028 * 63.07461 * 4 2 1 31 31 H 0.97000 * 120.00013 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.91720 * 26.49558 * 14 13 2 33 33 H 1.08997 * 109.91904 * 265.19516 * 14 13 2 34 34 H 1.08994 * 110.31253 * 239.85461 * 15 14 13 35 35 H 1.09003 * 110.30713 * 117.68892 * 15 14 13 36 36 H 1.08003 * 119.98647 * 359.74552 * 19 18 16 37 37 H 1.08009 * 119.97324 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.98676 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.00996 * 180.02562 * 22 21 20 40 40 H 1.08998 * 110.83711 * 81.96830 * 25 13 2 41 41 H 1.08994 * 110.58649 * 318.77169 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5452 -0.6556 1.2877 6 1 4.0829 -0.1316 0.5115 7 6 4.2357 -1.2645 2.3141 8 7 3.5809 -1.9030 3.2592 9 14 6.1013 -1.1825 2.3623 10 1 6.5327 0.2367 2.4322 11 1 6.5981 -1.9107 3.5574 12 1 6.6562 -1.8088 1.1355 13 7 2.0197 -0.6924 -1.1996 14 6 1.6093 -2.1134 -1.1959 15 6 1.3530 -2.5133 -2.6608 16 6 1.6122 -1.2289 -3.4812 17 1 2.6252 -1.2260 -3.8836 18 6 0.6000 -1.0905 -4.5891 19 6 -0.7506 -1.0864 -4.2951 20 6 -1.6791 -0.9600 -5.3111 21 6 -1.2584 -0.8381 -6.6226 22 6 0.0911 -0.8430 -6.9189 23 6 1.0225 -0.9680 -5.9018 24 9 2.3423 -0.9720 -6.1902 25 6 1.4354 -0.1016 -2.4331 26 1 -0.3632 0.3940 0.9491 27 1 -0.3634 0.6249 -0.8158 28 1 -0.3632 -1.0190 -0.1332 29 1 1.6325 -0.2404 2.1383 30 1 1.7225 -1.7637 1.2220 31 1 4.0667 -2.3317 3.9811 32 1 0.6965 -2.2347 -0.6128 33 1 2.4055 -2.7287 -0.7769 34 1 0.3217 -2.8421 -2.7883 35 1 2.0424 -3.3013 -2.9639 36 1 -1.0805 -1.1865 -3.2716 37 1 -2.7343 -0.9564 -5.0804 38 1 -1.9849 -0.7398 -7.4156 39 1 0.4196 -0.7474 -7.9434 40 1 1.9837 0.7915 -2.7326 41 1 0.3794 0.1251 -2.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299441517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = -20.754441 kcal Electronic energy + Delta-G solvation = -21687.658153 eV Core-core repulsion = 18481.512621 eV Total energy + Delta-G solvation = -3206.145532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.94385 -39.83599 -38.33743 -34.61948 -32.45876 -31.05222 -30.62733 -28.78500 -27.53025 -27.19223 -23.74109 -23.00424 -22.34018 -21.70265 -19.94260 -18.49932 -17.79318 -16.64921 -16.19283 -16.06771 -15.62706 -15.24126 -14.92382 -14.40963 -14.27623 -13.66602 -13.46199 -13.29409 -13.16943 -12.66317 -12.56053 -12.13681 -11.77106 -11.72260 -11.51286 -11.43327 -11.19324 -11.06543 -10.87287 -10.71298 -10.62702 -10.38514 -10.17513 -9.87412 -9.15157 -9.07823 -9.00172 -8.70401 -8.24460 -7.51663 -5.87712 -3.85811 1.01376 1.04325 3.41959 3.42874 3.46124 3.50563 4.14290 4.39255 4.56748 4.58007 4.75634 4.88598 5.00299 5.10611 5.13114 5.21721 5.35648 5.49803 5.56102 5.72430 5.79131 5.83963 5.88889 5.90669 5.98290 6.03414 6.05477 6.08831 6.14237 6.22730 6.37204 6.46165 6.53171 6.69522 6.74089 6.80018 6.96163 7.52032 7.65391 7.82383 8.00005 8.13832 8.58879 9.20753 9.76307 11.24170 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.004192 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.584235 B = 6677.054602 C = 7274.414836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.488 5.488 14 C 0.041 3.959 15 C -0.121 4.121 16 C -0.058 4.058 17 H 0.093 0.907 18 C -0.095 4.095 19 C -0.088 4.088 20 C -0.129 4.129 21 C -0.101 4.101 22 C -0.155 4.155 23 C 0.099 3.901 24 F -0.137 7.137 25 C 0.037 3.963 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 1.108 -18.374 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.211 5.211 14 C -0.087 4.087 15 C -0.159 4.159 16 C -0.077 4.077 17 H 0.111 0.889 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.173 4.173 23 C 0.079 3.921 24 F -0.116 7.116 25 C -0.091 4.091 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.093 0.907 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.567 1.060 -18.190 21.063 hybrid contribution 0.363 -0.076 0.049 0.374 sum -10.203 0.984 -18.141 20.837 Atomic orbital electron populations 1.22556 0.99903 1.00986 1.01118 1.22031 0.90037 0.98852 0.92277 0.91088 1.19216 0.96456 0.95368 0.89813 1.21157 0.91523 1.32664 1.07811 0.92059 1.25001 0.98048 0.95857 0.95894 1.69954 1.35267 1.36345 1.12953 0.86690 0.86363 0.77985 0.77113 1.20472 1.21675 1.20330 1.64987 1.53991 1.01363 1.00745 1.22817 1.00385 0.91353 0.94112 1.22563 1.01212 0.96576 0.95558 1.21051 0.97545 0.96563 0.92574 0.88895 1.19986 0.95527 1.01234 0.92900 1.20957 0.91464 0.98166 0.99976 1.21195 0.99897 1.00904 0.92708 1.20961 0.94747 0.99326 0.96893 1.21119 0.93219 1.04098 0.98905 1.17600 0.77823 1.03290 0.93342 1.91492 1.32117 1.93893 1.94063 1.23416 0.98412 0.96737 0.90563 0.92360 0.93778 0.92862 0.96466 0.96196 0.93273 0.93481 0.89623 0.91824 0.91175 0.85082 0.85482 0.85304 0.84975 0.90697 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 8.36 37.16 0.31 -2.83 16 2 C 0.08 1.56 2.48 -67.71 -0.17 1.39 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.72 4.23 -27.88 -0.12 0.61 16 5 C -0.49 -13.89 8.79 -34.44 -0.30 -14.20 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.49 -9.37 5.01 -222.33 -1.11 -10.48 16 14 C 0.04 0.74 5.07 -2.75 -0.01 0.73 16 15 C -0.12 -1.75 6.39 -25.37 -0.16 -1.91 16 16 C -0.06 -0.83 3.24 -89.91 -0.29 -1.13 16 17 H 0.09 1.43 7.22 -51.93 -0.37 1.06 16 18 C -0.10 -1.19 4.94 -104.55 -0.52 -1.71 16 19 C -0.09 -0.95 8.12 -39.60 -0.32 -1.27 16 20 C -0.13 -1.16 10.04 -39.58 -0.40 -1.55 16 21 C -0.10 -0.86 10.04 -39.59 -0.40 -1.26 16 22 C -0.15 -1.53 10.03 -39.52 -0.40 -1.93 16 23 C 0.10 1.22 7.25 -39.42 -0.29 0.93 16 24 F -0.14 -1.87 16.24 2.25 0.04 -1.83 16 25 C 0.04 0.57 5.77 -1.79 -0.01 0.56 16 26 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.04 0.65 6.39 -51.93 -0.33 0.31 16 28 H 0.05 0.87 5.95 -51.93 -0.31 0.56 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.53 6.76 -51.93 -0.35 0.18 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.84 5.28 -51.93 -0.27 0.57 16 33 H 0.09 1.76 8.13 -51.93 -0.42 1.34 16 34 H 0.06 0.81 6.88 -51.93 -0.36 0.46 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 1.36 7.29 -52.48 -0.38 0.98 16 37 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.70 4.48 -51.93 -0.23 0.47 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -30.40 324.93 -9.59 -40.00 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.96 Total: -1.08 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.17 Total: -22.17 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.38 Total: -37.05 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.40 -9.59 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.241 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds