Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.52999 * 109.47586 * 120.00296 * 2 1 3 5 5 C 1.50701 * 109.47065 * 183.07244 * 4 2 1 6 6 H 1.07991 * 120.00144 * 1.33182 * 5 4 2 7 7 C 1.37879 * 119.99591 * 181.32491 * 5 4 2 8 8 N 1.31512 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46957 * 60.00532 * 9 7 5 11 11 H 1.48500 * 109.47299 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47292 * 300.00579 * 9 7 5 13 13 N 1.46910 * 109.46975 * 240.00664 * 2 1 3 14 14 C 1.47903 * 110.99548 * 296.79931 * 13 2 1 15 15 C 1.53994 * 107.05579 * 145.84228 * 14 13 2 16 16 C 1.54594 * 105.13811 * 358.77768 * 15 14 13 17 17 H 1.09004 * 110.72518 * 96.57625 * 16 15 14 18 18 C 1.50707 * 110.72308 * 219.68092 * 16 15 14 19 19 C 1.38217 * 120.01275 * 56.14590 * 18 16 15 20 20 C 1.38214 * 120.02565 * 180.02562 * 19 18 16 21 21 C 1.38269 * 120.05478 * 0.02562 * 20 19 18 22 22 C 1.38170 * 120.02063 * 0.02562 * 21 20 19 23 23 C 1.38441 * 120.01129 * 236.17433 * 18 16 15 24 24 F 1.35098 * 120.02639 * 359.97438 * 23 18 16 25 25 C 1.48730 * 111.04212 * 54.37503 * 13 2 1 26 26 H 1.08998 * 109.46539 * 292.54552 * 1 2 3 27 27 H 1.08997 * 109.47302 * 52.54604 * 1 2 3 28 28 H 1.08997 * 109.46653 * 172.54987 * 1 2 3 29 29 H 1.09000 * 109.47041 * 303.07769 * 4 2 1 30 30 H 1.09005 * 109.47028 * 63.07461 * 4 2 1 31 31 H 0.97000 * 120.00013 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.91720 * 26.49558 * 14 13 2 33 33 H 1.08997 * 109.91904 * 265.19516 * 14 13 2 34 34 H 1.08994 * 110.31253 * 239.85461 * 15 14 13 35 35 H 1.09003 * 110.30713 * 117.68892 * 15 14 13 36 36 H 1.08003 * 119.98647 * 359.74552 * 19 18 16 37 37 H 1.08009 * 119.97324 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.98676 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.00996 * 180.02562 * 22 21 20 40 40 H 1.08998 * 110.83711 * 81.96830 * 25 13 2 41 41 H 1.08994 * 110.58649 * 318.77169 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5452 -0.6556 1.2877 6 1 4.0829 -0.1316 0.5115 7 6 4.2357 -1.2645 2.3141 8 7 3.5809 -1.9030 3.2592 9 14 6.1013 -1.1825 2.3623 10 1 6.5327 0.2367 2.4322 11 1 6.5981 -1.9107 3.5574 12 1 6.6562 -1.8088 1.1355 13 7 2.0197 -0.6924 -1.1996 14 6 1.6093 -2.1134 -1.1959 15 6 1.3530 -2.5133 -2.6608 16 6 1.6122 -1.2289 -3.4812 17 1 2.6252 -1.2260 -3.8836 18 6 0.6000 -1.0905 -4.5891 19 6 -0.7506 -1.0864 -4.2951 20 6 -1.6791 -0.9600 -5.3111 21 6 -1.2584 -0.8381 -6.6226 22 6 0.0911 -0.8430 -6.9189 23 6 1.0225 -0.9680 -5.9018 24 9 2.3423 -0.9720 -6.1902 25 6 1.4354 -0.1016 -2.4331 26 1 -0.3632 0.3940 0.9491 27 1 -0.3634 0.6249 -0.8158 28 1 -0.3632 -1.0190 -0.1332 29 1 1.6325 -0.2404 2.1383 30 1 1.7225 -1.7637 1.2220 31 1 4.0667 -2.3317 3.9811 32 1 0.6965 -2.2347 -0.6128 33 1 2.4055 -2.7287 -0.7769 34 1 0.3217 -2.8421 -2.7883 35 1 2.0424 -3.3013 -2.9639 36 1 -1.0805 -1.1865 -3.2716 37 1 -2.7343 -0.9564 -5.0804 38 1 -1.9849 -0.7398 -7.4156 39 1 0.4196 -0.7474 -7.9434 40 1 1.9837 0.7915 -2.7326 41 1 0.3794 0.1251 -2.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299441517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = -37.751299 kcal Electronic energy + Delta-G solvation = -21688.395192 eV Core-core repulsion = 18481.512621 eV Total energy + Delta-G solvation = -3206.882571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.87941 -40.95831 -39.42489 -36.11244 -34.41392 -32.23273 -31.40317 -30.33141 -28.98515 -28.66667 -25.35484 -24.15219 -23.37041 -23.15619 -21.04342 -20.05261 -18.68624 -18.36908 -17.58489 -17.21950 -16.56656 -16.49012 -16.25855 -16.21356 -15.06106 -14.97178 -14.87034 -14.59990 -14.23542 -14.07019 -13.63758 -13.48642 -13.39693 -13.22373 -12.83988 -12.73152 -12.58297 -12.48153 -12.37759 -12.30016 -12.20512 -11.89346 -11.60200 -11.37781 -11.16932 -10.98304 -10.48626 -9.85185 -9.54742 -8.99098 -8.11524 -6.16496 0.22812 0.29047 1.40288 1.42941 1.50561 2.46178 2.66114 3.11913 3.24724 3.34930 3.65611 3.74228 3.85609 3.96273 4.15741 4.19126 4.22132 4.35664 4.40931 4.44651 4.47357 4.56780 4.65630 4.71134 4.85518 4.96105 5.01275 5.03943 5.13316 5.14676 5.19798 5.25896 5.29356 5.32136 5.45582 5.48637 5.54017 5.71787 5.88628 5.99561 6.24216 6.30001 6.50838 6.97218 7.49569 9.00124 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.004192 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.584235 B = 6677.054602 C = 7274.414836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.062 0.938 4 C 0.036 3.964 5 C -0.505 4.505 6 H 0.054 0.946 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.515 5.515 14 C 0.045 3.955 15 C -0.110 4.110 16 C -0.049 4.049 17 H 0.073 0.927 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.155 4.155 23 C 0.072 3.928 24 F -0.154 7.154 25 C 0.043 3.957 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.057 0.943 29 H -0.008 1.008 30 H -0.001 1.001 31 H 0.259 0.741 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 1.583 -20.591 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.198 4.198 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.148 4.148 16 C -0.068 4.068 17 H 0.092 0.908 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.140 4.140 21 C -0.110 4.110 22 C -0.174 4.174 23 C 0.053 3.947 24 F -0.132 7.132 25 C -0.085 4.085 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.010 0.990 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.306 1.545 -20.420 23.891 hybrid contribution 0.852 -0.215 0.693 1.119 sum -11.454 1.330 -19.727 22.850 Atomic orbital electron populations 1.22413 0.96762 1.01973 1.02293 1.21734 0.92537 0.97459 0.90765 0.91996 1.19062 0.95141 0.94448 0.91502 1.21466 0.93176 1.32208 1.07451 0.92727 1.25814 1.02796 0.95582 0.95610 1.70074 1.37051 1.37267 1.13608 0.85665 0.80748 0.78351 0.77218 1.19537 1.21050 1.19963 1.64820 1.55454 1.02057 1.01532 1.22686 0.98843 0.90373 0.96417 1.22480 1.02605 0.96798 0.92920 1.20847 0.97500 0.95637 0.92858 0.90808 1.19821 0.95784 1.03379 0.92210 1.21088 0.90898 0.98393 1.00924 1.21564 1.01007 0.99096 0.92357 1.21398 0.94626 0.97219 0.97762 1.21413 0.93555 1.03251 0.99184 1.17936 0.77648 1.05005 0.94129 1.91446 1.33380 1.94235 1.94175 1.23408 0.99069 0.96878 0.89105 0.92427 0.90875 0.92370 0.98960 0.98259 0.93202 0.93424 0.93455 0.89486 0.91147 0.84619 0.82596 0.81923 0.83259 0.91097 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.70 8.36 71.98 0.60 -5.10 16 2 C 0.08 3.46 2.48 44.91 0.11 3.57 16 3 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.04 1.88 4.23 29.85 0.13 2.00 16 5 C -0.50 -29.33 8.79 25.60 0.22 -29.10 16 6 H 0.05 3.18 7.74 -2.92 -0.02 3.16 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 9 Si 0.95 46.45 29.54 68.60 2.03 48.48 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.52 -20.07 5.01 -857.30 -4.29 -24.36 16 14 C 0.04 1.65 5.07 86.45 0.44 2.08 16 15 C -0.11 -3.13 6.39 31.47 0.20 -2.93 16 16 C -0.05 -1.39 3.24 -10.33 -0.03 -1.42 16 17 H 0.07 2.34 7.22 -2.39 -0.02 2.32 16 18 C -0.11 -2.59 4.94 -19.82 -0.10 -2.69 16 19 C -0.10 -1.77 8.12 22.26 0.18 -1.59 16 20 C -0.12 -1.67 10.04 22.27 0.22 -1.44 16 21 C -0.09 -1.17 10.04 22.26 0.22 -0.95 16 22 C -0.16 -2.64 10.03 22.31 0.22 -2.42 16 23 C 0.07 1.68 7.25 22.38 0.16 1.84 16 24 F -0.15 -4.20 16.24 44.97 0.73 -3.46 16 25 C 0.04 1.31 5.77 86.61 0.50 1.81 16 26 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 27 H 0.07 1.95 6.39 -2.39 -0.02 1.93 16 28 H 0.06 1.83 5.95 -2.39 -0.01 1.81 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.00 -0.05 6.76 -2.38 -0.02 -0.07 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.05 1.72 5.28 -2.39 -0.01 1.71 16 33 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 34 H 0.09 2.07 6.88 -2.39 -0.02 2.06 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.14 2.36 7.29 -2.91 -0.02 2.34 16 37 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.80 4.48 -2.39 -0.01 1.79 16 Total: -1.00 -67.87 324.93 3.32 -64.55 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.02 Total: 8.59 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.55 Total: -35.98 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -4.01 Total: -82.18 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.73 Total: -3.46 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -67.87 3.32 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds