Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46974 * 2 1 4 4 C 1.52997 * 109.47426 * 119.99691 * 2 1 3 5 5 C 1.50701 * 109.47482 * 183.16289 * 4 2 1 6 6 H 1.08001 * 119.99419 * 5.07529 * 5 4 2 7 7 C 1.37873 * 120.00351 * 185.07774 * 5 4 2 8 8 N 1.31515 * 119.99874 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99915 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99994 * 9 7 5 11 11 H 1.48501 * 109.47244 * 210.00242 * 9 7 5 12 12 H 1.48501 * 109.47259 * 329.99913 * 9 7 5 13 13 N 1.46896 * 109.47195 * 240.00066 * 2 1 3 14 14 C 1.47906 * 111.00233 * 68.60938 * 13 2 1 15 15 C 1.53991 * 107.05983 * 214.15878 * 14 13 2 16 16 C 1.54599 * 105.13941 * 1.22208 * 15 14 13 17 17 H 1.08998 * 110.72612 * 263.41902 * 16 15 14 18 18 C 1.50702 * 110.72276 * 140.31400 * 16 15 14 19 19 C 1.38221 * 120.01305 * 301.45672 * 18 16 15 20 20 C 1.38228 * 120.02167 * 179.97438 * 19 18 16 21 21 C 1.38264 * 120.05585 * 0.02562 * 20 19 18 22 22 C 1.38178 * 120.02091 * 0.02562 * 21 20 19 23 23 C 1.38440 * 120.01205 * 121.17629 * 18 16 15 24 24 F 1.35104 * 120.02313 * 0.02562 * 23 18 16 25 25 C 1.48532 * 110.99835 * 311.21367 * 13 2 1 26 26 H 1.08999 * 109.46609 * 307.61867 * 1 2 3 27 27 H 1.08998 * 109.47208 * 67.61919 * 1 2 3 28 28 H 1.08996 * 109.46911 * 187.62330 * 1 2 3 29 29 H 1.09001 * 109.47397 * 303.16704 * 4 2 1 30 30 H 1.09003 * 109.46650 * 63.16610 * 4 2 1 31 31 H 0.97006 * 119.99349 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.91869 * 94.80417 * 14 13 2 33 33 H 1.09006 * 109.91521 * 333.51120 * 14 13 2 34 34 H 1.09000 * 110.31090 * 120.14178 * 15 14 13 35 35 H 1.09000 * 110.30821 * 242.21153 * 15 14 13 36 36 H 1.08000 * 119.99019 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.96972 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.98740 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00662 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.66944 * 41.28962 * 25 13 2 41 41 H 1.08997 * 110.81261 * 278.21979 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5451 -0.6536 1.2891 6 1 4.0795 -0.0781 0.5478 7 6 4.2396 -1.3266 2.2717 8 7 5.5530 -1.2680 2.3061 9 14 3.3152 -2.3227 3.5534 10 1 3.1433 -3.7156 3.0683 11 1 4.0854 -2.3322 4.8230 12 1 1.9820 -1.7121 3.7878 13 7 2.0197 -0.6925 -1.1994 14 6 1.7216 0.0872 -2.4204 15 6 1.4341 -0.9257 -3.5442 16 6 1.5570 -2.3148 -2.8768 17 1 2.5483 -2.7363 -3.0431 18 6 0.4901 -3.2483 -3.3882 19 6 -0.8444 -2.9187 -3.2432 20 6 -1.8231 -3.7746 -3.7127 21 6 -1.4686 -4.9613 -4.3273 22 6 -0.1351 -5.2933 -4.4724 23 6 0.8464 -4.4335 -4.0086 24 9 2.1506 -4.7542 -4.1555 25 6 1.3357 -1.9990 -1.3762 26 1 -0.3632 0.6273 0.8140 27 1 -0.3633 0.3913 -0.9502 28 1 -0.3633 -1.0186 0.1363 29 1 1.6312 -0.2411 2.1383 30 1 1.7238 -1.7639 1.2213 31 1 6.0416 -1.7412 2.9977 32 1 2.5805 0.7032 -2.6866 33 1 0.8470 0.7163 -2.2550 34 1 0.4269 -0.7814 -3.9350 35 1 2.1679 -0.8222 -4.3436 36 1 -1.1225 -1.9919 -2.7637 37 1 -2.8655 -3.5160 -3.5993 38 1 -2.2342 -5.6293 -4.6933 39 1 0.1415 -6.2205 -4.9522 40 1 0.2722 -1.9097 -1.1546 41 1 1.7948 -2.7643 -0.7504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299441523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -35.973094 kcal Electronic energy + Delta-G solvation = -21860.453835 eV Core-core repulsion = 18653.648372 eV Total energy + Delta-G solvation = -3206.805463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.90080 -40.97515 -39.41714 -36.11864 -34.42613 -32.54631 -31.42465 -30.10695 -29.47811 -28.77345 -25.14461 -24.34579 -23.40868 -22.57249 -21.13817 -20.26865 -18.78980 -18.68149 -17.57638 -17.24484 -16.59299 -16.39160 -16.33731 -15.99588 -15.07421 -15.05044 -14.91433 -14.74243 -14.22552 -14.09397 -13.93068 -13.68417 -13.51374 -13.29438 -12.88627 -12.71041 -12.56456 -12.49190 -12.41579 -12.22706 -11.84491 -11.74462 -11.60090 -11.43365 -11.31256 -11.16033 -10.68948 -9.86193 -9.56015 -8.95188 -8.19054 -6.17700 0.21669 0.28015 1.34317 1.35486 1.46745 2.39977 2.65226 3.07780 3.21321 3.34564 3.63710 3.73538 3.86049 3.93716 4.13389 4.18692 4.20410 4.32789 4.37155 4.40223 4.45603 4.56218 4.64455 4.70077 4.84951 4.93352 4.99790 5.05312 5.07009 5.10228 5.13855 5.15469 5.27270 5.28628 5.30951 5.47098 5.51154 5.53991 5.74265 5.98688 6.23648 6.34637 6.52754 6.89895 7.42634 8.98872 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.005019 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.677571 B = 5577.402447 C = 5926.491588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.088 3.912 3 H 0.062 0.938 4 C -0.001 4.001 5 C -0.489 4.489 6 H 0.032 0.968 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.245 1.245 13 N -0.524 5.524 14 C 0.032 3.968 15 C -0.106 4.106 16 C -0.054 4.054 17 H 0.062 0.938 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.121 4.121 21 C -0.093 4.093 22 C -0.157 4.157 23 C 0.066 3.934 24 F -0.157 7.157 25 C 0.051 3.949 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.012 0.988 31 H 0.261 0.739 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.073 0.927 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.597 -4.738 -14.904 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 H 0.080 0.920 4 C -0.038 4.038 5 C -0.528 4.528 6 H 0.050 0.950 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.168 1.168 13 N -0.248 5.248 14 C -0.095 4.095 15 C -0.144 4.144 16 C -0.074 4.074 17 H 0.081 0.919 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.175 4.175 23 C 0.047 3.953 24 F -0.136 7.136 25 C -0.077 4.077 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.833 -4.843 -14.735 25.178 hybrid contribution 0.435 -0.435 0.750 0.970 sum -19.398 -5.278 -13.985 24.489 Atomic orbital electron populations 1.22426 0.95855 1.02366 1.02864 1.21625 0.92945 0.97100 0.90378 0.92006 1.19560 0.94522 0.95552 0.94203 1.21291 0.91879 1.28743 1.10880 0.94998 1.25953 0.95487 0.98139 1.00285 1.70091 1.08163 1.45912 1.36033 0.85766 0.79815 0.79282 0.78382 1.20106 1.21248 1.16806 1.64770 1.54953 1.03105 1.01957 1.22928 1.00350 0.96467 0.89803 1.22432 1.03123 0.91612 0.97264 1.20868 0.96608 0.95081 0.94815 0.91900 1.19865 0.96151 0.94586 1.00752 1.21112 0.90439 1.00803 0.98756 1.21590 1.00812 0.93944 0.97515 1.21410 0.94975 0.97286 0.97382 1.21413 0.93145 1.00320 1.02640 1.18031 0.78079 0.96195 1.02955 1.91446 1.35175 1.92846 1.94086 1.23224 0.98005 0.92038 0.94412 0.91359 0.90849 0.92114 0.96033 0.96993 0.93073 0.91861 0.91787 0.88897 0.90906 0.84019 0.82227 0.81840 0.83458 0.90894 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.96 8.16 71.98 0.59 -4.37 16 2 C 0.09 3.41 2.24 44.92 0.10 3.52 16 3 H 0.06 2.52 8.10 -2.39 -0.02 2.50 16 4 C 0.00 -0.04 3.52 29.85 0.10 0.07 16 5 C -0.49 -29.24 9.34 25.60 0.24 -29.00 16 6 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 7 C 0.00 -0.25 5.47 84.65 0.46 0.22 16 8 N -0.96 -63.23 13.96 21.45 0.30 -62.93 16 9 Si 0.94 46.40 27.37 68.60 1.88 48.28 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.24 -10.98 6.69 99.48 0.67 -10.32 16 13 N -0.52 -20.17 4.90 -857.84 -4.21 -24.38 16 14 C 0.03 0.95 6.43 86.44 0.56 1.51 16 15 C -0.11 -2.69 6.42 31.47 0.20 -2.49 16 16 C -0.05 -1.64 3.25 -10.33 -0.03 -1.68 16 17 H 0.06 2.26 7.22 -2.39 -0.02 2.24 16 18 C -0.11 -2.84 4.94 -19.82 -0.10 -2.93 16 19 C -0.09 -1.76 8.15 22.26 0.18 -1.58 16 20 C -0.12 -1.69 10.04 22.27 0.22 -1.46 16 21 C -0.09 -1.28 10.04 22.26 0.22 -1.06 16 22 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 23 C 0.07 1.73 7.25 22.38 0.16 1.89 16 24 F -0.16 -4.87 16.24 44.97 0.73 -4.14 16 25 C 0.05 1.74 4.95 86.65 0.43 2.17 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 1.68 6.30 -2.39 -0.02 1.67 16 28 H 0.06 1.65 6.40 -2.39 -0.02 1.64 16 29 H 0.02 1.00 7.55 -2.39 -0.02 0.98 16 30 H 0.01 0.56 6.33 -2.39 -0.02 0.55 16 31 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.60 6.04 -2.38 -0.01 1.59 16 34 H 0.09 1.84 7.05 -2.39 -0.02 1.82 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.14 2.29 7.27 -2.91 -0.02 2.27 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.07 2.12 4.14 -2.39 -0.01 2.11 16 41 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 Total: -1.00 -73.68 322.60 3.24 -70.44 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.70 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.57 Total: -37.96 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.91 Total: -87.31 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.73 Total: -4.14 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.28 kcal Total: -73.68 3.24 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds