Wall clock time and date at job start Mon Mar 30 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47722 * 2 1 4 4 C 1.53406 * 109.47841 * 239.98369 * 2 1 3 5 5 C 1.50645 * 108.38270 * 289.65774 * 4 2 1 6 6 C 1.35083 * 124.47119 * 343.57122 * 5 4 2 7 7 N 1.33528 * 107.97659 * 179.97438 * 6 5 4 8 8 C 1.30741 * 109.16624 * 0.02562 * 7 6 5 9 9 N 1.35309 * 108.77116 * 0.02562 * 8 7 6 10 10 C 1.46502 * 126.50424 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47182 * 265.02744 * 10 9 8 12 12 O 1.21293 * 119.99828 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00168 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00112 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00102 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99880 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99966 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46986 * 89.99609 * 18 16 14 20 20 H 1.48502 * 109.47279 * 209.99609 * 18 16 14 21 21 H 1.48495 * 109.47290 * 329.99976 * 18 16 14 22 22 C 1.50865 * 123.94602 * 359.84130 * 6 5 4 23 23 C 1.53123 * 109.47683 * 120.00557 * 2 1 3 24 24 H 1.09003 * 109.45151 * 170.00237 * 23 2 1 25 25 C 1.52991 * 109.46414 * 289.97508 * 23 2 1 26 26 H 1.08995 * 109.47121 * 299.98802 * 1 2 3 27 27 H 1.08993 * 109.47230 * 59.99631 * 1 2 3 28 28 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.67532 * 49.37505 * 4 2 1 30 30 H 1.08995 * 109.67962 * 169.92963 * 4 2 1 31 31 H 1.08000 * 125.61744 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.46810 * 25.02078 * 10 9 8 33 33 H 1.09002 * 109.47386 * 145.02001 * 10 9 8 34 34 H 0.97003 * 120.00091 * 359.97438 * 13 11 10 35 35 H 0.97006 * 119.99469 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.67585 * 223.59843 * 22 6 5 37 37 H 1.08995 * 109.67644 * 103.09563 * 22 6 5 38 38 H 1.08996 * 109.47698 * 180.02562 * 25 23 2 39 39 H 1.09010 * 109.47068 * 300.06257 * 25 23 2 40 40 H 1.09001 * 109.47258 * 60.05633 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0415 -0.7235 -1.2523 5 6 1.7465 -2.1935 -1.1055 6 6 1.4316 -2.7973 0.0611 7 7 1.2366 -4.0949 -0.1860 8 6 1.4186 -4.3212 -1.4608 9 7 1.7398 -3.1557 -2.0684 10 6 2.0254 -2.9651 -3.4926 11 6 3.5136 -3.0319 -3.7199 12 8 4.2621 -3.2197 -2.7842 13 7 4.0128 -2.8829 -4.9628 14 6 5.3668 -2.9432 -5.1695 15 1 6.0334 -3.1096 -4.3363 16 6 5.8815 -2.7890 -6.4510 17 7 5.0704 -2.5860 -7.4648 18 14 7.7264 -2.8704 -6.7324 19 1 8.1232 -4.2743 -7.0102 20 1 8.0885 -2.0152 -7.8912 21 1 8.4339 -2.3867 -5.5198 22 6 1.3355 -2.0773 1.3833 23 6 2.0405 -0.7219 1.2501 24 1 3.1158 -0.8788 1.1650 25 6 1.7459 0.1296 2.4866 26 1 -0.3633 0.5136 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.5338 -0.3335 -2.1345 30 1 3.1165 -0.5727 -1.3499 31 1 1.3275 -5.2805 -1.9486 32 1 1.5342 -3.7486 -4.0696 33 1 1.6525 -1.9915 -3.8109 34 1 3.4142 -2.7330 -5.7112 35 1 5.4299 -2.4780 -8.3593 36 1 1.8210 -2.6688 2.1595 37 1 0.2880 -1.9222 1.6415 38 1 2.1096 -0.3839 3.3765 39 1 2.2470 1.0930 2.3921 40 1 0.6706 0.2862 2.5721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335917797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:01 Heat of formation + Delta-G solvation = 3.608787 kcal Electronic energy + Delta-G solvation = -21864.116065 eV Core-core repulsion = 18678.946963 eV Total energy + Delta-G solvation = -3185.169102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01143 -38.44632 -37.87102 -34.31864 -33.56872 -31.66932 -31.37043 -29.93121 -28.19586 -27.02231 -25.45339 -24.60070 -22.58822 -20.88295 -20.37688 -19.45426 -18.16890 -17.80580 -16.55791 -16.30040 -15.48639 -14.92093 -14.70467 -14.44874 -14.17401 -13.98617 -13.86230 -13.32431 -13.00263 -12.92866 -12.85017 -12.46165 -12.10456 -11.89579 -11.77035 -11.68507 -11.42343 -11.23140 -11.16223 -10.57210 -10.50733 -10.47158 -10.37552 -10.35839 -9.69109 -9.44451 -9.38929 -8.48762 -8.16820 -7.65247 -6.58659 -4.00434 2.43346 3.06621 3.13748 3.18429 3.24800 3.51935 3.61427 4.05281 4.57580 4.73723 4.78029 4.84632 4.97626 4.99375 5.17579 5.29465 5.36104 5.37614 5.41636 5.52178 5.60118 5.65387 5.73941 5.81441 5.90477 5.94206 5.98574 6.00216 6.09118 6.12738 6.15147 6.36416 6.46880 6.52112 6.84321 7.18780 7.39822 7.58973 7.85757 8.38680 8.51435 8.99003 9.30040 9.79684 10.58151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.004216 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.871907 B = 6640.233139 C = 6972.146356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.076 0.924 4 C -0.040 4.040 5 C -0.001 4.001 6 C -0.011 4.011 7 N -0.492 5.492 8 C 0.179 3.821 9 N -0.421 5.421 10 C 0.091 3.909 11 C 0.418 3.582 12 O -0.576 6.576 13 N -0.551 5.551 14 C -0.303 4.303 15 H 0.104 0.896 16 C 0.027 3.973 17 N -0.896 5.896 18 Si 0.932 3.068 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.021 4.021 23 C -0.088 4.088 24 H 0.074 0.926 25 C -0.145 4.145 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.199 0.801 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 5.318 9.795 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 H 0.094 0.906 4 C -0.078 4.078 5 C -0.118 4.118 6 C -0.141 4.141 7 N -0.210 5.210 8 C -0.102 4.102 9 N -0.101 5.101 10 C -0.036 4.036 11 C 0.202 3.798 12 O -0.460 6.460 13 N -0.187 5.187 14 C -0.433 4.433 15 H 0.122 0.878 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.759 3.241 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.059 4.059 23 C -0.107 4.107 24 H 0.092 0.908 25 C -0.202 4.202 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.215 0.785 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.227 0.773 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.592 4.629 10.629 15.047 hybrid contribution 0.884 0.403 -1.678 1.939 sum -8.708 5.033 8.951 13.464 Atomic orbital electron populations 1.21939 0.95129 1.02481 1.01112 1.21133 0.96089 0.98733 0.93688 0.90570 1.20131 1.01741 0.87754 0.98192 1.20727 1.09344 0.92576 0.89142 1.20230 1.09125 0.90149 0.94553 1.69854 1.21521 1.16206 1.13378 1.24754 1.05491 0.90951 0.89041 1.44512 1.49544 1.08421 1.07594 1.21636 0.97780 1.04735 0.79489 1.19866 0.88725 0.86530 0.84683 1.90612 1.59177 1.54549 1.41695 1.41808 1.08466 1.61874 1.06599 1.19714 0.82106 1.46820 0.94614 0.87792 1.25297 1.00686 0.96674 0.94914 1.69604 1.35651 1.48257 1.00176 0.85823 0.81770 0.78375 0.78177 1.20201 1.20726 1.19296 1.19882 1.00430 0.93395 0.92187 1.21212 1.00588 0.94466 0.94410 0.90750 1.21839 1.01613 0.99473 0.97298 0.92634 0.93145 0.91840 0.91291 0.90161 0.78463 0.87336 0.87915 0.77275 0.91579 0.91161 0.91093 0.92672 0.92684 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.27 37.15 0.31 -1.29 16 2 C -0.08 -0.91 2.64 -90.35 -0.24 -1.15 16 3 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 4 C -0.04 -0.59 5.50 -27.70 -0.15 -0.74 16 5 C 0.00 -0.02 6.28 -81.84 -0.51 -0.54 16 6 C -0.01 -0.19 6.24 -82.90 -0.52 -0.70 16 7 N -0.49 -9.22 11.24 -10.74 -0.12 -9.35 16 8 C 0.18 3.13 12.57 -89.93 -1.13 2.00 16 9 N -0.42 -7.42 2.23 -115.24 -0.26 -7.68 16 10 C 0.09 1.49 6.48 -5.19 -0.03 1.46 16 11 C 0.42 9.36 7.85 -10.99 -0.09 9.27 16 12 O -0.58 -15.49 16.00 5.55 0.09 -15.40 16 13 N -0.55 -13.13 5.29 -10.97 -0.06 -13.19 16 14 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 17 N -0.90 -23.25 13.05 55.50 0.72 -22.53 16 18 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.02 -0.28 4.95 -27.62 -0.14 -0.42 16 23 C -0.09 -1.05 2.47 -90.38 -0.22 -1.28 16 24 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 25 C -0.14 -1.34 9.00 37.15 0.33 -1.01 16 26 H 0.05 0.50 6.76 -51.93 -0.35 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.78 5.64 -51.93 -0.29 0.49 16 29 H 0.07 0.93 7.97 -51.93 -0.41 0.51 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.20 2.80 8.06 -52.49 -0.42 2.38 16 32 H 0.11 1.46 8.13 -51.93 -0.42 1.03 16 33 H 0.10 1.45 7.96 -51.93 -0.41 1.04 16 34 H 0.39 8.78 7.90 -40.82 -0.32 8.46 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 40 H 0.06 0.48 6.76 -51.93 -0.35 0.13 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -32.16 324.65 -8.20 -40.36 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.82 Total: 9.60 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.63 Total: -2.05 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.29 Total: -52.74 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.16 -8.20 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335917797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.972 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds