Wall clock time and date at job start Mon Mar 30 2020 02:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47117 * 2 1 4 4 C 1.50710 * 109.46894 * 119.99585 * 2 1 3 5 5 C 1.38214 * 120.00750 * 100.00113 * 4 2 1 6 6 C 1.38224 * 120.02197 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05408 * 359.97438 * 6 5 4 8 8 C 1.38183 * 120.02323 * 359.97438 * 7 6 5 9 9 C 1.38437 * 120.01179 * 280.23248 * 4 2 1 10 10 F 1.35099 * 120.02745 * 0.04422 * 9 4 2 11 11 N 1.46895 * 109.47157 * 239.99777 * 2 1 3 12 12 C 1.46853 * 110.99777 * 184.21372 * 11 2 1 13 13 C 1.53035 * 109.51768 * 174.16164 * 12 11 2 14 14 C 1.53116 * 109.28501 * 59.17835 * 13 12 11 15 15 C 1.50694 * 109.52811 * 182.43946 * 14 13 12 16 16 H 1.07993 * 120.00612 * 119.67857 * 15 14 13 17 17 C 1.37879 * 119.99919 * 299.68220 * 15 14 13 18 18 N 1.31514 * 120.00583 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00072 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47384 * 89.99550 * 19 17 15 21 21 H 1.48500 * 109.47275 * 210.00431 * 19 17 15 22 22 H 1.48513 * 109.46768 * 330.00112 * 19 17 15 23 23 C 1.53124 * 109.15831 * 302.34305 * 14 13 12 24 24 C 1.46843 * 110.99993 * 59.99893 * 11 2 1 25 25 H 1.08993 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47340 * 300.00340 * 1 2 3 27 27 H 1.08996 * 109.47122 * 59.99966 * 1 2 3 28 28 H 1.08000 * 119.99561 * 359.95312 * 5 4 2 29 29 H 1.08004 * 119.97833 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.98941 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.01017 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.45688 * 294.17372 * 12 11 2 33 33 H 1.08994 * 109.46263 * 54.14531 * 12 11 2 34 34 H 1.09005 * 109.50697 * 299.23315 * 13 12 11 35 35 H 1.09002 * 109.50011 * 179.11896 * 13 12 11 36 36 H 1.09003 * 109.52536 * 62.24445 * 14 13 12 37 37 H 0.96993 * 120.00184 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.50046 * 297.71058 * 23 14 13 39 39 H 1.09002 * 109.50339 * 177.59146 * 23 14 13 40 40 H 1.08996 * 109.46715 * 305.85652 * 24 11 2 41 41 H 1.09001 * 109.46167 * 65.82532 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2306 5 6 2.4587 -2.0224 1.1458 6 6 2.9200 -2.6740 2.2741 7 6 2.9559 -2.0143 3.4887 8 6 2.5312 -0.7022 3.5756 9 6 2.0624 -0.0505 2.4473 10 9 1.6406 1.2301 2.5324 11 7 2.0197 -0.6925 -1.1994 12 6 3.4842 -0.7999 -1.1839 13 6 3.9470 -1.6502 -2.3692 14 6 3.4782 -0.9982 -3.6729 15 6 3.8792 -1.8620 -4.8407 16 1 3.1235 -2.2682 -5.4967 17 6 5.2110 -2.1339 -5.0718 18 7 5.5611 -2.8882 -6.0907 19 14 6.5183 -1.4309 -3.9377 20 1 6.7731 -2.3822 -2.8263 21 1 7.7730 -1.2152 -4.7023 22 1 6.0479 -0.1361 -3.3828 23 6 1.9540 -0.8539 -3.6427 24 6 1.5489 -0.0267 -2.4205 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.4312 -2.5388 0.1976 29 1 3.2534 -3.6991 2.2069 30 1 3.3169 -2.5243 4.3696 31 1 2.5597 -0.1870 4.5244 32 1 3.9221 0.1955 -1.2580 33 1 3.8042 -1.2690 -0.2536 34 1 3.5206 -2.6501 -2.2885 35 1 5.0350 -1.7167 -2.3664 36 1 3.9353 -0.0137 -3.7728 37 1 6.4980 -3.0791 -6.2535 38 1 1.4962 -1.8412 -3.5820 39 1 1.6180 -0.3515 -4.5498 40 1 0.4633 0.0658 -2.3883 41 1 1.9959 0.9651 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335977035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:39 Heat of formation + Delta-G solvation = -13.513057 kcal Electronic energy + Delta-G solvation = -22187.652995 eV Core-core repulsion = 18981.821473 eV Total energy + Delta-G solvation = -3205.831522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.95189 -39.87144 -38.08572 -34.98016 -32.39596 -31.12488 -30.62363 -30.14235 -28.86297 -25.73806 -23.87723 -22.96967 -21.95388 -21.73551 -20.23485 -18.87018 -17.63193 -16.74190 -16.62428 -16.08240 -15.65510 -15.32835 -14.46082 -14.40297 -14.32542 -14.06956 -13.58951 -13.15247 -12.97547 -12.94885 -12.72266 -12.46594 -12.18592 -12.08240 -11.70537 -11.56355 -11.42143 -11.16442 -10.96221 -10.67823 -10.55124 -10.08288 -9.87906 -9.63620 -9.05962 -8.99736 -8.79444 -8.70312 -8.49263 -8.00770 -6.05055 -4.03221 1.08603 1.16849 3.27013 3.38183 3.39916 3.52923 4.01584 4.24850 4.42476 4.52788 4.74710 4.93827 5.15821 5.21737 5.25285 5.29141 5.38652 5.44769 5.64470 5.68853 5.81166 5.84857 5.89437 5.91122 6.02736 6.06510 6.12304 6.15478 6.23578 6.35237 6.38864 6.39775 6.46378 6.75307 6.83526 6.84593 6.93180 7.22878 7.40229 7.49892 7.64113 7.80890 8.55956 8.99848 9.58214 11.08501 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.005324 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.800710 B = 5257.538633 C = 5897.586474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.119 3.881 3 H 0.048 0.952 4 C -0.108 4.108 5 C -0.068 4.068 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.161 4.161 9 C 0.096 3.904 10 F -0.141 7.141 11 N -0.526 5.526 12 C 0.043 3.957 13 C -0.114 4.114 14 C 0.013 3.987 15 C -0.509 4.509 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.268 1.268 23 C -0.095 4.095 24 C 0.054 3.946 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 4.086 18.611 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.115 4.115 8 C -0.179 4.179 9 C 0.076 3.924 10 F -0.120 7.120 11 N -0.251 5.251 12 C -0.084 4.084 13 C -0.152 4.152 14 C -0.006 4.006 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.193 1.193 23 C -0.133 4.133 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.705 3.592 18.500 20.359 hybrid contribution 1.241 1.384 0.669 1.976 sum -6.464 4.976 19.169 20.833 Atomic orbital electron populations 1.21838 0.93165 1.02890 1.01749 1.20393 0.95804 0.94831 0.87927 0.93419 1.19919 1.01988 0.95677 0.93361 1.21278 0.94616 0.92977 0.99696 1.21310 1.00847 1.00630 0.92547 1.20992 0.98687 0.93647 0.98177 1.21041 1.03104 0.96197 0.97607 1.17558 1.00912 0.79402 0.94484 1.91467 1.87801 1.35763 1.96960 1.61963 1.10988 1.51264 1.00880 1.22454 0.86526 0.99162 1.00281 1.22006 0.98848 0.99723 0.94612 1.19190 0.92146 0.96204 0.93102 1.21060 0.93112 1.30174 1.10343 0.90854 1.25017 0.98526 0.94622 0.95050 1.69899 1.17199 1.37981 1.29090 0.86879 0.80991 0.80180 0.80355 1.20556 1.22595 1.19287 1.21489 0.98195 0.99366 0.94218 1.22260 0.99250 0.95662 0.90137 0.91433 0.92495 0.91698 0.83056 0.85304 0.85373 0.85125 0.95781 0.91001 0.91256 0.93409 0.96120 0.92757 0.91728 0.92337 0.91211 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.95 37.16 0.33 -1.35 16 2 C 0.12 1.68 2.01 -68.86 -0.14 1.54 16 3 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 4 C -0.11 -1.46 4.42 -104.55 -0.46 -1.92 16 5 C -0.07 -0.88 7.23 -39.60 -0.29 -1.17 16 6 C -0.14 -1.47 10.04 -39.58 -0.40 -1.87 16 7 C -0.10 -0.95 10.04 -39.59 -0.40 -1.35 16 8 C -0.16 -1.73 10.03 -39.51 -0.40 -2.13 16 9 C 0.10 1.23 7.24 -39.42 -0.29 0.95 16 10 F -0.14 -1.89 16.67 2.25 0.04 -1.85 16 11 N -0.53 -8.45 3.70 -228.08 -0.84 -9.30 16 12 C 0.04 0.77 4.55 -3.83 -0.02 0.75 16 13 C -0.11 -2.43 4.84 -26.65 -0.13 -2.56 16 14 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 15 C -0.51 -14.18 9.14 -34.44 -0.31 -14.49 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 18 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 19 Si 0.89 22.07 24.37 -169.99 -4.14 17.93 16 20 H -0.28 -6.72 6.89 56.52 0.39 -6.33 16 21 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 23 C -0.09 -1.85 5.32 -26.65 -0.14 -2.00 16 24 C 0.05 0.89 5.22 -3.83 -0.02 0.87 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.74 6.28 -51.93 -0.33 0.42 16 28 H 0.15 2.12 6.46 -52.49 -0.34 1.78 16 29 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 1.18 4.92 -51.93 -0.26 0.93 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.05 1.08 3.38 -51.93 -0.18 0.91 16 36 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 0.99 6.01 -51.93 -0.31 0.68 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -29.85 315.12 -8.36 -38.21 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.02 Total: -0.12 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.91 Total: -22.71 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.07 Total: -36.20 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.85 -8.36 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335977035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.700 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds