Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47117 * 2 1 4 4 C 1.50710 * 109.46894 * 119.99585 * 2 1 3 5 5 C 1.38214 * 120.00750 * 100.00113 * 4 2 1 6 6 C 1.38224 * 120.02197 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05408 * 359.97438 * 6 5 4 8 8 C 1.38183 * 120.02323 * 359.97438 * 7 6 5 9 9 C 1.38437 * 120.01179 * 280.23248 * 4 2 1 10 10 F 1.35099 * 120.02745 * 0.04422 * 9 4 2 11 11 N 1.46895 * 109.47157 * 239.99777 * 2 1 3 12 12 C 1.46853 * 110.99777 * 184.21372 * 11 2 1 13 13 C 1.53035 * 109.51768 * 174.16164 * 12 11 2 14 14 C 1.53116 * 109.28501 * 59.17835 * 13 12 11 15 15 C 1.50694 * 109.52811 * 182.43946 * 14 13 12 16 16 H 1.07993 * 120.00612 * 119.67857 * 15 14 13 17 17 C 1.37879 * 119.99919 * 299.68220 * 15 14 13 18 18 N 1.31514 * 120.00583 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00072 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47384 * 89.99550 * 19 17 15 21 21 H 1.48500 * 109.47275 * 210.00431 * 19 17 15 22 22 H 1.48513 * 109.46768 * 330.00112 * 19 17 15 23 23 C 1.53124 * 109.15831 * 302.34305 * 14 13 12 24 24 C 1.46843 * 110.99993 * 59.99893 * 11 2 1 25 25 H 1.08993 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47340 * 300.00340 * 1 2 3 27 27 H 1.08996 * 109.47122 * 59.99966 * 1 2 3 28 28 H 1.08000 * 119.99561 * 359.95312 * 5 4 2 29 29 H 1.08004 * 119.97833 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.98941 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.01017 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.45688 * 294.17372 * 12 11 2 33 33 H 1.08994 * 109.46263 * 54.14531 * 12 11 2 34 34 H 1.09005 * 109.50697 * 299.23315 * 13 12 11 35 35 H 1.09002 * 109.50011 * 179.11896 * 13 12 11 36 36 H 1.09003 * 109.52536 * 62.24445 * 14 13 12 37 37 H 0.96993 * 120.00184 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.50046 * 297.71058 * 23 14 13 39 39 H 1.09002 * 109.50339 * 177.59146 * 23 14 13 40 40 H 1.08996 * 109.46715 * 305.85652 * 24 11 2 41 41 H 1.09001 * 109.46167 * 65.82532 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2306 5 6 2.4587 -2.0224 1.1458 6 6 2.9200 -2.6740 2.2741 7 6 2.9559 -2.0143 3.4887 8 6 2.5312 -0.7022 3.5756 9 6 2.0624 -0.0505 2.4473 10 9 1.6406 1.2301 2.5324 11 7 2.0197 -0.6925 -1.1994 12 6 3.4842 -0.7999 -1.1839 13 6 3.9470 -1.6502 -2.3692 14 6 3.4782 -0.9982 -3.6729 15 6 3.8792 -1.8620 -4.8407 16 1 3.1235 -2.2682 -5.4967 17 6 5.2110 -2.1339 -5.0718 18 7 5.5611 -2.8882 -6.0907 19 14 6.5183 -1.4309 -3.9377 20 1 6.7731 -2.3822 -2.8263 21 1 7.7730 -1.2152 -4.7023 22 1 6.0479 -0.1361 -3.3828 23 6 1.9540 -0.8539 -3.6427 24 6 1.5489 -0.0267 -2.4205 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.4312 -2.5388 0.1976 29 1 3.2534 -3.6991 2.2069 30 1 3.3169 -2.5243 4.3696 31 1 2.5597 -0.1870 4.5244 32 1 3.9221 0.1955 -1.2580 33 1 3.8042 -1.2690 -0.2536 34 1 3.5206 -2.6501 -2.2885 35 1 5.0350 -1.7167 -2.3664 36 1 3.9353 -0.0137 -3.7728 37 1 6.4980 -3.0791 -6.2535 38 1 1.4962 -1.8412 -3.5820 39 1 1.6180 -0.3515 -4.5498 40 1 0.4633 0.0658 -2.3883 41 1 1.9959 0.9651 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335977035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = -30.535706 kcal Electronic energy + Delta-G solvation = -22188.391153 eV Core-core repulsion = 18981.821473 eV Total energy + Delta-G solvation = -3206.569680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89781 -40.99475 -39.27183 -36.46305 -34.29212 -32.35892 -32.02203 -31.25825 -29.98925 -27.49876 -25.08363 -24.05744 -23.37012 -23.11457 -21.37919 -20.49084 -18.83479 -18.55311 -17.74735 -17.12587 -16.71297 -16.60781 -15.99100 -15.74644 -15.36765 -15.30756 -14.98755 -14.78014 -14.34505 -14.27618 -14.05336 -13.83276 -13.40606 -13.22778 -13.03169 -12.76499 -12.71563 -12.56682 -12.21857 -12.15791 -12.10689 -11.79862 -11.56787 -11.38285 -10.95988 -10.78473 -10.61980 -9.75992 -9.60320 -9.30182 -8.29537 -6.31983 0.21272 0.30527 1.27651 1.33319 1.43231 2.31358 2.66086 2.80475 3.05925 3.34387 3.53569 3.90958 4.05754 4.08839 4.09800 4.17107 4.27777 4.33691 4.41966 4.45126 4.51776 4.60513 4.64961 4.73691 4.79307 4.84463 4.95346 4.97874 5.03473 5.14413 5.15045 5.21554 5.25870 5.32048 5.45941 5.52998 5.54581 5.68143 5.77588 5.98965 6.10850 6.20914 6.33756 6.75114 7.33205 8.87623 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.005324 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.800710 B = 5257.538633 C = 5897.586474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.121 3.879 3 H 0.040 0.960 4 C -0.123 4.123 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.089 4.089 8 C -0.158 4.158 9 C 0.079 3.921 10 F -0.149 7.149 11 N -0.527 5.527 12 C 0.054 3.946 13 C -0.109 4.109 14 C 0.010 3.990 15 C -0.514 4.514 16 H 0.034 0.966 17 C 0.013 3.987 18 N -0.951 5.951 19 Si 0.947 3.053 20 H -0.263 1.263 21 H -0.299 1.299 22 H -0.255 1.255 23 C -0.090 4.090 24 C 0.061 3.939 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.017 0.983 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 4.735 21.971 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.058 0.942 4 C -0.124 4.124 5 C -0.103 4.103 6 C -0.152 4.152 7 C -0.107 4.107 8 C -0.176 4.176 9 C 0.059 3.941 10 F -0.127 7.127 11 N -0.252 5.252 12 C -0.074 4.074 13 C -0.147 4.147 14 C -0.008 4.008 15 C -0.552 4.552 16 H 0.052 0.948 17 C -0.184 4.184 18 N -0.592 5.592 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.227 1.227 22 H -0.179 1.179 23 C -0.128 4.128 24 C -0.066 4.066 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.036 0.964 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.855 4.250 21.878 23.630 hybrid contribution 1.205 1.122 -0.398 1.694 sum -6.650 5.372 21.480 23.118 Atomic orbital electron populations 1.21805 0.91687 1.03050 1.02545 1.20423 0.96947 0.94166 0.87216 0.94217 1.19890 1.03090 0.96050 0.93366 1.21224 0.96087 0.93014 1.00015 1.21585 0.99840 1.01490 0.92304 1.21378 0.97249 0.93223 0.98850 1.21378 1.01816 0.96599 0.97815 1.17761 1.01949 0.79355 0.95024 1.91447 1.88031 1.36250 1.97005 1.61921 1.09782 1.51851 1.01612 1.22279 0.87735 0.98073 0.99280 1.21836 0.98021 0.99910 0.94945 1.19165 0.94697 0.94640 0.92341 1.21387 0.92412 1.30132 1.11237 0.94758 1.25838 1.00946 0.95031 0.96555 1.70046 1.17818 1.40005 1.31298 0.85875 0.77808 0.80260 0.78649 1.18875 1.22725 1.17894 1.21381 0.95556 0.99693 0.96160 1.22175 1.00931 0.94693 0.88805 0.91539 0.91593 0.90995 0.84550 0.83452 0.82051 0.82911 0.96431 0.89264 0.91894 0.94565 0.96972 0.92637 0.92559 0.92464 0.88440 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.95 71.98 0.64 -2.30 16 2 C 0.12 3.18 2.01 44.18 0.09 3.27 16 3 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 4 C -0.12 -3.08 4.42 -19.82 -0.09 -3.17 16 5 C -0.09 -2.05 7.23 22.26 0.16 -1.89 16 6 C -0.13 -2.51 10.04 22.27 0.22 -2.29 16 7 C -0.09 -1.40 10.04 22.26 0.22 -1.17 16 8 C -0.16 -2.85 10.03 22.31 0.22 -2.63 16 9 C 0.08 1.83 7.24 22.38 0.16 2.00 16 10 F -0.15 -3.69 16.67 44.97 0.75 -2.94 16 11 N -0.53 -16.15 3.70 -875.50 -3.24 -19.39 16 12 C 0.05 1.85 4.55 86.32 0.39 2.24 16 13 C -0.11 -4.58 4.84 30.64 0.15 -4.43 16 14 C 0.01 0.49 1.75 -11.46 -0.02 0.47 16 15 C -0.51 -29.56 9.14 25.60 0.23 -29.32 16 16 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 17 C 0.01 0.76 5.45 84.66 0.46 1.22 16 18 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 19 Si 0.95 45.79 24.37 68.60 1.67 47.47 16 20 H -0.26 -11.98 6.89 99.48 0.69 -11.29 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.25 -11.66 6.53 99.48 0.65 -11.01 16 23 C -0.09 -3.51 5.32 30.65 0.16 -3.35 16 24 C 0.06 1.91 5.22 86.33 0.45 2.36 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.46 6.28 -2.39 -0.02 1.44 16 28 H 0.14 3.66 6.46 -2.91 -0.02 3.64 16 29 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.09 2.78 4.92 -2.39 -0.01 2.77 16 34 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.04 1.59 3.38 -2.39 -0.01 1.58 16 36 H 0.01 0.59 7.19 -2.39 -0.02 0.57 16 37 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.10 2.54 6.01 -2.39 -0.01 2.52 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.01 315.12 3.89 -62.12 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.94 Total: 11.55 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 3.47 Total: -38.99 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.94 Total: -79.21 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.75 Total: -2.94 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.47 kcal Total: -66.01 3.89 -62.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335977035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.580 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds