Wall clock time and date at job start Mon Mar 30 2020 02:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47583 * 2 1 4 4 C 1.50701 * 109.47543 * 120.00819 * 2 1 3 5 5 C 1.38263 * 119.98583 * 259.99642 * 4 2 1 6 6 C 1.38225 * 120.05445 * 180.02562 * 5 4 2 7 7 C 1.38218 * 120.02208 * 359.97438 * 6 5 4 8 8 C 1.38445 * 119.97632 * 0.02562 * 7 6 5 9 9 F 1.35093 * 120.02545 * 179.72769 * 8 7 6 10 10 C 1.38176 * 119.98594 * 80.01607 * 4 2 1 11 11 N 1.46906 * 109.46995 * 240.00542 * 2 1 3 12 12 C 1.46844 * 111.00536 * 184.20964 * 11 2 1 13 13 C 1.53032 * 109.52622 * 174.16061 * 12 11 2 14 14 C 1.53116 * 109.28022 * 59.17730 * 13 12 11 15 15 C 1.50695 * 109.52721 * 182.44126 * 14 13 12 16 16 H 1.07997 * 120.00198 * 119.68293 * 15 14 13 17 17 C 1.37884 * 119.99982 * 299.68706 * 15 14 13 18 18 N 1.31518 * 119.99799 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00022 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46957 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47077 * 120.00000 * 19 17 15 22 22 H 1.48504 * 109.46713 * 239.99942 * 19 17 15 23 23 C 1.53126 * 109.16103 * 302.34651 * 14 13 12 24 24 C 1.46849 * 111.00038 * 59.99505 * 11 2 1 25 25 H 1.09011 * 109.46658 * 299.99414 * 1 2 3 26 26 H 1.08992 * 109.47731 * 59.99341 * 1 2 3 27 27 H 1.09002 * 109.47583 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.97611 * 0.02562 * 5 4 2 29 29 H 1.07992 * 119.98908 * 179.97438 * 6 5 4 30 30 H 1.08007 * 120.01313 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.01901 * 0.02562 * 10 4 2 32 32 H 1.08999 * 109.45851 * 294.17852 * 12 11 2 33 33 H 1.09002 * 109.45878 * 54.13885 * 12 11 2 34 34 H 1.09004 * 109.49963 * 299.23775 * 13 12 11 35 35 H 1.08996 * 109.50515 * 179.12294 * 13 12 11 36 36 H 1.09000 * 109.52452 * 62.24932 * 14 13 12 37 37 H 0.96998 * 119.99656 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.50476 * 297.71328 * 23 14 13 39 39 H 1.08998 * 109.50252 * 177.59191 * 23 14 13 40 40 H 1.08997 * 109.46096 * 305.86129 * 24 11 2 41 41 H 1.08996 * 109.45881 * 65.82638 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 6 2.4589 0.0196 2.3243 6 6 2.9205 -0.6307 3.4533 7 6 2.9557 -2.0120 3.4900 8 6 2.5289 -2.7441 2.3953 9 9 2.5680 -4.0941 2.4280 10 6 2.0670 -2.0915 1.2646 11 7 2.0196 -0.6924 -1.1996 12 6 3.4840 -0.7999 -1.1844 13 6 3.9468 -1.6499 -2.3698 14 6 3.4778 -0.9978 -3.6733 15 6 3.8787 -1.8614 -4.8413 16 1 3.1229 -2.2675 -5.4972 17 6 5.2105 -2.1333 -5.0725 18 7 6.1310 -1.6385 -4.2740 19 14 5.7075 -3.2045 -6.5200 20 1 4.4926 -3.6336 -7.2583 21 1 6.5917 -2.4306 -7.4279 22 1 6.4332 -4.4014 -6.0238 23 6 1.9536 -0.8535 -3.6430 24 6 1.5486 -0.0265 -2.4207 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 2.4314 1.0989 2.2966 29 1 3.2538 -0.0594 4.3069 30 1 3.3160 -2.5199 4.3724 31 1 1.7345 -2.6616 0.4097 32 1 3.9219 0.1956 -1.2584 33 1 3.8041 -1.2690 -0.2540 34 1 3.5203 -2.6498 -2.2890 35 1 5.0348 -1.7165 -2.3671 36 1 3.9349 -0.0133 -3.7732 37 1 7.0679 -1.8295 -4.4369 38 1 1.4957 -1.8408 -3.5823 39 1 1.6176 -0.3510 -4.5500 40 1 0.4631 0.0660 -2.3883 41 1 1.9956 0.9653 -2.4889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335978623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:44 Heat of formation + Delta-G solvation = -42.331607 kcal Electronic energy + Delta-G solvation = -21896.922043 eV Core-core repulsion = 18689.840854 eV Total energy + Delta-G solvation = -3207.081188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85966 -40.88777 -39.17773 -36.28850 -34.12871 -31.90479 -31.75552 -31.35618 -29.78450 -27.42695 -25.10164 -23.79573 -23.56558 -23.02987 -21.29234 -20.34174 -18.48848 -18.25723 -17.55038 -17.03769 -16.70444 -16.55792 -16.26329 -15.69250 -15.35831 -14.93675 -14.75002 -14.45064 -14.34778 -14.21254 -13.98606 -13.50443 -13.21428 -13.12971 -12.87465 -12.74527 -12.59014 -12.47552 -12.28796 -12.25147 -11.97570 -11.84020 -11.63498 -11.34250 -10.76566 -10.65326 -10.38022 -9.79431 -9.60025 -9.17752 -8.08633 -6.21776 0.22035 0.32537 1.38618 1.40714 1.51965 2.43085 2.64633 3.00556 3.18568 3.31466 3.66696 3.94120 4.13424 4.20609 4.24494 4.31231 4.31435 4.38585 4.49937 4.55186 4.62221 4.74616 4.82904 4.88432 4.92987 4.98814 5.05692 5.10930 5.16605 5.23722 5.25573 5.33767 5.37896 5.40659 5.55274 5.58311 5.64964 5.98603 6.01285 6.03625 6.30110 6.36963 6.40957 6.90530 7.46138 8.96125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.004820 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.788834 B = 5807.201436 C = 6521.984891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.115 3.885 3 H 0.056 0.944 4 C -0.053 4.053 5 C -0.127 4.127 6 C -0.086 4.086 7 C -0.159 4.159 8 C 0.068 3.932 9 F -0.155 7.155 10 C -0.140 4.140 11 N -0.533 5.533 12 C 0.074 3.926 13 C -0.092 4.092 14 C 0.044 3.956 15 C -0.532 4.532 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.952 3.048 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.099 4.099 24 C 0.065 3.935 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.150 0.850 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.013 0.987 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.057 0.943 36 H -0.011 1.011 37 H 0.259 0.741 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 5.042 15.879 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.074 0.926 4 C -0.054 4.054 5 C -0.146 4.146 6 C -0.104 4.104 7 C -0.178 4.178 8 C 0.049 3.951 9 F -0.134 7.134 10 C -0.159 4.159 11 N -0.259 5.259 12 C -0.054 4.054 13 C -0.131 4.131 14 C 0.026 3.974 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.208 1.208 23 C -0.137 4.137 24 C -0.063 4.063 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.169 0.831 31 H 0.141 0.859 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.007 0.993 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.701 4.522 15.889 19.158 hybrid contribution 1.166 -0.363 -1.121 1.658 sum -8.536 4.159 14.767 17.557 Atomic orbital electron populations 1.21846 0.91636 1.02718 1.03000 1.20682 0.97008 0.94763 0.86850 0.92648 1.19721 0.97562 0.92410 0.95671 1.21413 0.99065 1.01370 0.92718 1.21320 0.97196 0.92918 0.98929 1.21418 1.02732 0.95540 0.98083 1.18067 1.03617 0.76599 0.96825 1.91451 1.94650 1.30270 1.97032 1.21026 1.02127 0.95655 0.97089 1.61989 1.09987 1.52035 1.01868 1.21964 0.87258 0.97551 0.98632 1.21386 1.00651 0.96818 0.94234 1.18661 0.91748 0.93970 0.93036 1.21633 0.92178 1.31122 1.12034 0.93107 1.25743 0.96815 0.97231 0.98870 1.70030 1.00658 1.46271 1.38915 0.85598 0.78248 0.78666 0.79711 1.19145 1.20534 1.20812 1.21538 0.96880 0.99162 0.96135 1.22121 1.00515 0.94553 0.89087 0.90219 0.91182 0.92515 0.83204 0.81640 0.83074 0.85913 0.96886 0.91834 0.95560 0.92463 0.99332 0.93159 0.93197 0.92693 0.88554 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.95 71.98 0.64 -2.13 16 2 C 0.11 2.95 2.28 44.17 0.10 3.05 16 3 H 0.06 1.36 8.00 -2.39 -0.02 1.34 16 4 C -0.05 -1.34 3.68 -19.87 -0.07 -1.42 16 5 C -0.13 -2.51 9.67 22.27 0.22 -2.30 16 6 C -0.09 -1.49 10.04 22.26 0.22 -1.27 16 7 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 8 C 0.07 1.88 7.30 22.38 0.16 2.05 16 9 F -0.16 -4.75 17.27 44.97 0.78 -3.98 16 10 C -0.14 -4.09 8.09 22.31 0.18 -3.90 16 11 N -0.53 -17.90 3.87 -875.53 -3.38 -21.28 16 12 C 0.07 2.94 5.07 86.32 0.44 3.38 16 13 C -0.09 -4.58 5.12 30.64 0.16 -4.43 16 14 C 0.04 2.28 2.16 -11.46 -0.02 2.26 16 15 C -0.53 -30.15 8.56 25.60 0.22 -29.93 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.66 5.31 84.66 0.45 1.11 16 18 N -0.92 -54.44 11.37 21.45 0.24 -54.19 16 19 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 C -0.10 -4.14 5.32 30.65 0.16 -3.97 16 24 C 0.06 2.16 5.22 86.32 0.45 2.61 16 25 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 1.34 6.28 -2.39 -0.02 1.33 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.15 2.20 8.04 -2.91 -0.02 2.17 16 29 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.12 4.07 7.72 -2.91 -0.02 4.05 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.06 2.46 5.96 -2.39 -0.01 2.45 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 3.21 6.17 -2.39 -0.01 3.20 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.63 6.01 -2.39 -0.01 2.61 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -64.21 325.64 4.19 -60.01 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.00 Total: 10.69 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.53 Total: -38.04 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -3.14 Total: -75.47 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.78 Total: -3.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.21 4.19 -60.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.680 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds