Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.05946 * 2 1 4 4 C 1.54266 * 110.03249 * 238.57856 * 2 1 3 5 5 C 1.54897 * 104.19522 * 217.10365 * 4 2 1 6 6 C 1.54889 * 102.74690 * 37.94392 * 5 4 2 7 7 H 1.09001 * 110.48576 * 80.87019 * 6 5 4 8 8 C 1.50701 * 110.48650 * 203.37800 * 6 5 4 9 9 O 1.21593 * 120.00257 * 118.54633 * 8 6 5 10 10 N 1.32915 * 119.99890 * 298.54731 * 8 6 5 11 11 C 1.33308 * 119.99719 * 180.02562 * 10 8 6 12 12 C 1.40984 * 126.35916 * 359.97186 * 11 10 8 13 13 C 1.35122 * 108.23673 * 179.79492 * 12 11 10 14 14 N 1.36333 * 108.90198 * 0.37648 * 13 12 11 15 15 C 1.46493 * 125.86606 * 179.89286 * 14 13 12 16 16 C 1.50706 * 109.47128 * 274.68735 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 N 1.37277 * 126.35452 * 180.02562 * 11 10 8 25 25 H 0.97008 * 126.35032 * 359.96795 * 24 11 10 26 26 C 1.53880 * 110.03527 * 121.41015 * 2 1 3 27 27 H 1.09007 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47374 * 299.96224 * 1 2 3 29 29 H 1.08998 * 109.47309 * 59.96750 * 1 2 3 30 30 H 1.09002 * 110.48473 * 98.43462 * 4 2 1 31 31 H 1.09000 * 110.48876 * 335.78235 * 4 2 1 32 32 H 1.09001 * 110.75915 * 279.62549 * 5 4 2 33 33 H 1.08997 * 110.75755 * 156.25833 * 5 4 2 34 34 H 1.07993 * 125.87779 * 0.02562 * 12 11 10 35 35 H 1.07999 * 125.54746 * 180.25635 * 13 12 11 36 36 H 1.09001 * 109.47786 * 154.69007 * 15 14 13 37 37 H 1.09006 * 109.47401 * 34.68592 * 15 14 13 38 38 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 39 39 H 1.09007 * 110.02973 * 0.02562 * 26 2 1 40 40 H 1.08995 * 110.03382 * 238.57376 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9406 0.7037 7 1 2.2791 -2.8439 0.6575 8 6 4.0989 -2.1660 1.5712 9 8 4.2629 -1.4958 2.5724 10 7 4.9881 -3.0973 1.2419 11 6 6.0595 -3.2970 2.0096 12 6 6.3812 -2.6014 3.1929 13 6 7.5405 -3.1007 3.6751 14 7 7.9785 -4.0853 2.8400 15 6 9.2014 -4.8738 3.0099 16 6 10.3672 -4.1273 2.4143 17 1 10.2125 -3.1621 1.9548 18 6 11.6312 -4.6763 2.4560 19 7 11.8196 -5.8517 3.0151 20 14 13.0761 -3.7512 1.7171 21 1 14.3160 -4.5498 1.8904 22 1 12.8310 -3.5245 0.2701 23 1 13.2301 -2.4436 2.4039 24 7 7.0548 -4.2175 1.7942 25 1 7.1088 -4.8437 1.0552 26 6 2.0571 -0.7534 1.2338 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5132 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 2.3297 -0.0537 -2.0254 31 1 1.3142 -1.4662 -1.5965 32 1 4.1710 -0.8291 -0.6751 33 1 3.5326 -2.3679 -1.3420 34 1 5.7992 -1.8087 3.6393 35 1 8.0399 -2.7718 4.5745 36 1 9.0883 -5.8332 2.5051 37 1 9.3814 -5.0410 4.0719 38 1 11.0692 -6.3322 3.3984 39 1 1.2229 -1.1195 1.8324 40 1 2.6866 -0.0952 1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345297087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = 39.341555 kcal Electronic energy + Delta-G solvation = -20878.493446 eV Core-core repulsion = 17694.873833 eV Total energy + Delta-G solvation = -3183.619613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97430 -39.26550 -37.25863 -34.55566 -33.08544 -31.48530 -31.19377 -30.41794 -28.69850 -26.56199 -25.20440 -23.41399 -22.24638 -21.43840 -20.81790 -19.69596 -18.65079 -17.68883 -16.79255 -16.09314 -15.47080 -15.17079 -14.99196 -14.49594 -14.16381 -13.99486 -13.70413 -13.36614 -13.15721 -13.00590 -12.83111 -12.67547 -12.22959 -12.07689 -11.51222 -11.41469 -10.98916 -10.86379 -10.68903 -10.64743 -10.57970 -10.37844 -10.30355 -10.27241 -9.30222 -9.26166 -9.06011 -8.90233 -8.36702 -7.10854 -6.82581 -4.73169 1.55165 1.92960 2.90850 3.19180 3.21198 3.39632 4.08428 4.16632 4.27658 4.62791 4.71868 4.82672 4.83744 5.06194 5.12649 5.38317 5.43705 5.56352 5.63950 5.67178 5.69972 5.78578 5.85497 5.90819 5.97581 6.03862 6.13870 6.14445 6.18974 6.26141 6.41887 6.43702 6.50456 6.60387 6.66261 7.22468 7.32861 7.49412 7.76630 7.98470 8.23082 8.28404 8.97509 9.34646 10.45118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036083 B = 0.003115 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.810172 B = 8987.622999 C = 9298.028800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.121 4.121 5 C -0.100 4.100 6 C -0.084 4.084 7 H 0.089 0.911 8 C 0.499 3.501 9 O -0.587 6.587 10 N -0.698 5.698 11 C 0.470 3.530 12 C -0.331 4.331 13 C 0.163 3.837 14 N -0.339 5.339 15 C 0.244 3.756 16 C -0.637 4.637 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.892 5.892 20 Si 1.075 2.925 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.282 1.282 24 N -0.466 5.466 25 H 0.445 0.555 26 C -0.110 4.110 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 5.738 -3.550 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.138 4.138 6 C -0.106 4.106 7 H 0.107 0.893 8 C 0.285 3.715 9 O -0.469 6.469 10 N -0.462 5.462 11 C 0.220 3.780 12 C -0.363 4.363 13 C 0.017 3.983 14 N -0.124 5.124 15 C 0.127 3.873 16 C -0.674 4.674 17 H 0.083 0.917 18 C -0.175 4.175 19 N -0.526 5.526 20 Si 0.901 3.099 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.208 1.208 24 N -0.188 5.188 25 H 0.292 0.708 26 C -0.148 4.148 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.885 5.295 -4.052 13.627 hybrid contribution -1.466 0.027 0.419 1.524 sum -13.350 5.322 -3.633 14.824 Atomic orbital electron populations 1.21878 0.95371 1.01586 1.01171 1.21767 0.95283 0.99461 0.95206 0.91318 1.22487 0.97544 0.98847 0.97010 1.22285 0.97135 0.99877 0.94497 1.21649 0.94725 0.98956 0.95235 0.89310 1.20705 0.86249 0.80304 0.84195 1.90503 1.77597 1.50341 1.28475 1.68802 1.07575 1.33108 1.36708 1.19302 0.86020 0.83494 0.89176 1.22499 1.01436 1.10913 1.01455 1.22882 0.94301 0.86666 0.94439 1.47701 1.17183 1.33719 1.13805 1.20093 0.77114 0.90905 0.99154 1.22270 0.93254 1.07815 1.44103 0.91691 1.25985 1.00363 0.96213 0.94944 1.70888 1.35295 1.12600 1.33833 0.83424 0.75029 0.75205 0.76236 1.20251 1.21005 1.20834 1.44552 1.16544 1.36619 1.21109 0.70771 1.22172 0.98956 0.96766 0.96897 0.92688 0.92906 0.93077 0.91974 0.91608 0.91736 0.90934 0.79817 0.79480 0.94038 0.92411 0.92080 0.92034 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 37.15 0.33 -0.98 16 2 C -0.10 -1.10 3.50 -89.50 -0.31 -1.41 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.32 6.36 -25.07 -0.16 -1.47 16 5 C -0.10 -1.35 6.27 -24.73 -0.15 -1.50 16 6 C -0.08 -1.28 3.33 -90.11 -0.30 -1.58 16 7 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 8 C 0.50 9.60 7.03 -11.81 -0.08 9.52 16 9 O -0.59 -12.41 12.36 5.28 0.07 -12.35 16 10 N -0.70 -13.72 10.44 -11.59 -0.12 -13.84 16 11 C 0.47 9.13 8.07 -155.19 -1.25 7.88 16 12 C -0.33 -6.17 9.51 -39.65 -0.38 -6.55 16 13 C 0.16 2.76 11.46 -16.66 -0.19 2.56 16 14 N -0.34 -6.30 3.63 -62.23 -0.23 -6.53 16 15 C 0.24 5.02 5.50 -5.19 -0.03 4.99 16 16 C -0.64 -15.26 9.39 -34.44 -0.32 -15.58 16 17 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 19 N -0.89 -23.31 13.65 55.43 0.76 -22.55 16 20 Si 1.08 22.33 29.90 -169.99 -5.08 17.24 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 N -0.47 -8.36 7.37 31.32 0.23 -8.13 16 25 H 0.45 7.05 8.96 -182.55 -1.64 5.42 16 26 C -0.11 -1.50 5.81 -25.61 -0.15 -1.65 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 32 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.18 3.58 5.77 -52.49 -0.30 3.28 16 35 H 0.19 2.51 8.06 -52.49 -0.42 2.08 16 36 H 0.04 0.87 8.01 -51.93 -0.42 0.45 16 37 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 38 H 0.27 6.79 7.22 -40.82 -0.29 6.49 16 39 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 40 H 0.08 1.26 6.90 -51.93 -0.36 0.90 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -28.75 330.52 -9.73 -38.48 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.24 Total: 7.77 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.10 Total: -5.08 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.64 Total: -51.05 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.08 Total: 17.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.75 -9.73 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.826 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds