Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.05946 * 2 1 4 4 C 1.54266 * 110.03249 * 238.57856 * 2 1 3 5 5 C 1.54897 * 104.19522 * 217.10365 * 4 2 1 6 6 C 1.54889 * 102.74690 * 37.94392 * 5 4 2 7 7 H 1.09001 * 110.48576 * 80.87019 * 6 5 4 8 8 C 1.50701 * 110.48650 * 203.37800 * 6 5 4 9 9 O 1.21593 * 120.00257 * 118.54633 * 8 6 5 10 10 N 1.32915 * 119.99890 * 298.54731 * 8 6 5 11 11 C 1.33308 * 119.99719 * 180.02562 * 10 8 6 12 12 C 1.40984 * 126.35916 * 359.97186 * 11 10 8 13 13 C 1.35122 * 108.23673 * 179.79492 * 12 11 10 14 14 N 1.36333 * 108.90198 * 0.37648 * 13 12 11 15 15 C 1.46493 * 125.86606 * 179.89286 * 14 13 12 16 16 C 1.50706 * 109.47128 * 274.68735 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 N 1.37277 * 126.35452 * 180.02562 * 11 10 8 25 25 H 0.97008 * 126.35032 * 359.96795 * 24 11 10 26 26 C 1.53880 * 110.03527 * 121.41015 * 2 1 3 27 27 H 1.09007 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47374 * 299.96224 * 1 2 3 29 29 H 1.08998 * 109.47309 * 59.96750 * 1 2 3 30 30 H 1.09002 * 110.48473 * 98.43462 * 4 2 1 31 31 H 1.09000 * 110.48876 * 335.78235 * 4 2 1 32 32 H 1.09001 * 110.75915 * 279.62549 * 5 4 2 33 33 H 1.08997 * 110.75755 * 156.25833 * 5 4 2 34 34 H 1.07993 * 125.87779 * 0.02562 * 12 11 10 35 35 H 1.07999 * 125.54746 * 180.25635 * 13 12 11 36 36 H 1.09001 * 109.47786 * 154.69007 * 15 14 13 37 37 H 1.09006 * 109.47401 * 34.68592 * 15 14 13 38 38 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 39 39 H 1.09007 * 110.02973 * 0.02562 * 26 2 1 40 40 H 1.08995 * 110.03382 * 238.57376 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5008 -0.7190 6 6 2.8874 -1.9406 0.7037 7 1 2.2791 -2.8439 0.6575 8 6 4.0989 -2.1660 1.5712 9 8 4.2629 -1.4958 2.5724 10 7 4.9881 -3.0973 1.2419 11 6 6.0595 -3.2970 2.0096 12 6 6.3812 -2.6014 3.1929 13 6 7.5405 -3.1007 3.6751 14 7 7.9785 -4.0853 2.8400 15 6 9.2014 -4.8738 3.0099 16 6 10.3672 -4.1273 2.4143 17 1 10.2125 -3.1621 1.9548 18 6 11.6312 -4.6763 2.4560 19 7 11.8196 -5.8517 3.0151 20 14 13.0761 -3.7512 1.7171 21 1 14.3160 -4.5498 1.8904 22 1 12.8310 -3.5245 0.2701 23 1 13.2301 -2.4436 2.4039 24 7 7.0548 -4.2175 1.7942 25 1 7.1088 -4.8437 1.0552 26 6 2.0571 -0.7534 1.2338 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5132 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 2.3297 -0.0537 -2.0254 31 1 1.3142 -1.4662 -1.5965 32 1 4.1710 -0.8291 -0.6751 33 1 3.5326 -2.3679 -1.3420 34 1 5.7992 -1.8087 3.6393 35 1 8.0399 -2.7718 4.5745 36 1 9.0883 -5.8332 2.5051 37 1 9.3814 -5.0410 4.0719 38 1 11.0692 -6.3322 3.3984 39 1 1.2229 -1.1195 1.8324 40 1 2.6866 -0.0952 1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345297087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = 23.199860 kcal Electronic energy + Delta-G solvation = -20879.193402 eV Core-core repulsion = 17694.873833 eV Total energy + Delta-G solvation = -3184.319569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.45696 -40.57812 -38.45817 -36.28095 -34.72557 -32.68212 -32.64315 -31.83696 -29.75527 -28.17983 -26.31092 -25.06417 -23.61319 -22.86671 -22.09218 -20.77713 -19.97372 -19.36331 -18.35665 -17.44615 -16.88663 -16.60929 -16.30396 -15.93824 -15.63722 -15.29334 -15.13281 -14.55785 -14.44818 -14.37570 -14.12824 -13.91508 -13.85322 -13.27106 -12.93102 -12.62995 -12.54388 -11.99587 -11.98210 -11.90094 -11.63319 -11.58453 -11.51499 -11.26028 -10.97069 -10.77092 -10.70658 -10.60652 -9.90062 -8.92559 -8.48738 -6.66815 0.07603 0.44933 1.43970 1.54331 1.55990 1.77646 2.43732 2.63524 2.82321 2.96108 3.41468 3.70368 3.77392 3.82979 4.04414 4.17103 4.34921 4.46588 4.49234 4.50722 4.58644 4.64436 4.69721 4.78277 4.79060 4.95641 5.02118 5.08809 5.14510 5.18781 5.24278 5.35059 5.39151 5.41866 5.48925 5.60965 5.79637 5.92435 6.05096 6.29510 6.45260 6.79732 7.09124 7.84002 8.53787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036083 B = 0.003115 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.810172 B = 8987.622999 C = 9298.028800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.085 4.085 7 H 0.099 0.901 8 C 0.485 3.515 9 O -0.614 6.614 10 N -0.707 5.707 11 C 0.453 3.547 12 C -0.343 4.343 13 C 0.178 3.822 14 N -0.344 5.344 15 C 0.254 3.746 16 C -0.641 4.641 17 H 0.052 0.948 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 1.112 2.888 21 H -0.281 1.281 22 H -0.277 1.277 23 H -0.270 1.270 24 N -0.462 5.462 25 H 0.452 0.548 26 C -0.107 4.107 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 6.302 -4.270 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.136 4.136 6 C -0.106 4.106 7 H 0.117 0.883 8 C 0.272 3.728 9 O -0.498 6.498 10 N -0.471 5.471 11 C 0.204 3.796 12 C -0.375 4.375 13 C 0.033 3.967 14 N -0.129 5.129 15 C 0.136 3.864 16 C -0.679 4.679 17 H 0.070 0.930 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.934 3.066 21 H -0.206 1.206 22 H -0.203 1.203 23 H -0.195 1.195 24 N -0.185 5.185 25 H 0.301 0.699 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.193 0.807 35 H 0.241 0.759 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.659 5.856 -4.782 14.745 hybrid contribution -1.247 -0.155 0.674 1.426 sum -13.906 5.701 -4.109 15.581 Atomic orbital electron populations 1.21844 0.93505 1.02169 1.02093 1.21753 0.96796 0.98986 0.93893 0.91361 1.22465 0.96333 0.99086 0.97073 1.22259 0.97858 0.99872 0.93592 1.21740 0.93315 1.00027 0.95543 0.88293 1.21490 0.87203 0.79711 0.84368 1.90482 1.78430 1.51154 1.29729 1.68893 1.07855 1.33415 1.36951 1.19556 0.86362 0.83984 0.89718 1.22425 1.02241 1.11197 1.01666 1.23423 0.93447 0.85087 0.94749 1.47606 1.16982 1.34045 1.14266 1.19852 0.76773 0.90473 0.99320 1.22470 0.94405 1.07393 1.43638 0.92969 1.27032 1.02742 0.96286 0.94854 1.70967 1.35385 1.13551 1.35463 0.82937 0.72720 0.74792 0.76154 1.20625 1.20264 1.19462 1.44543 1.16124 1.36554 1.21264 0.69897 1.22144 0.98458 0.95951 0.97921 0.92274 0.92683 0.91521 0.90550 0.89959 0.93698 0.90733 0.80715 0.75882 0.94183 0.91401 0.92464 0.91360 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.84 71.98 0.64 -1.55 16 2 C -0.10 -1.96 3.50 -10.07 -0.04 -1.99 16 3 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -2.18 6.36 31.67 0.20 -1.97 16 5 C -0.10 -2.56 6.27 31.89 0.20 -2.36 16 6 C -0.09 -2.55 3.33 -10.47 -0.03 -2.59 16 7 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 8 C 0.48 18.93 7.03 87.95 0.62 19.55 16 9 O -0.61 -26.65 12.36 -4.01 -0.05 -26.70 16 10 N -0.71 -28.03 10.44 -309.87 -3.24 -31.26 16 11 C 0.45 17.64 8.07 133.83 1.08 18.72 16 12 C -0.34 -12.75 9.51 22.22 0.21 -12.54 16 13 C 0.18 5.78 11.46 83.28 0.95 6.73 16 14 N -0.34 -12.41 3.63 -350.80 -1.27 -13.69 16 15 C 0.25 10.15 5.50 85.64 0.47 10.62 16 16 C -0.64 -30.10 9.39 25.60 0.24 -29.86 16 17 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 19 N -0.92 -47.45 13.65 21.45 0.29 -47.16 16 20 Si 1.11 44.03 29.90 68.60 2.05 46.09 16 21 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 24 N -0.46 -16.36 7.37 -54.81 -0.40 -16.77 16 25 H 0.45 14.19 8.96 -213.27 -1.91 12.28 16 26 C -0.11 -2.86 5.81 31.32 0.18 -2.68 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.36 7.85 -2.39 -0.02 1.34 16 32 H 0.04 1.33 8.05 -2.39 -0.02 1.31 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.18 6.91 5.77 -2.91 -0.02 6.90 16 35 H 0.22 5.40 8.06 -2.91 -0.02 5.38 16 36 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 37 H 0.07 2.64 8.01 -2.38 -0.02 2.62 16 38 H 0.27 13.32 7.22 -92.71 -0.67 12.65 16 39 H 0.07 1.70 7.67 -2.38 -0.02 1.68 16 40 H 0.05 1.70 6.90 -2.39 -0.02 1.69 16 Total: -1.00 -61.01 330.52 1.80 -59.22 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.77 Total: 30.09 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.19 Total: 0.18 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.62 Total: -108.87 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.05 Total: 46.09 kcal Total: -61.01 1.80 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.416 kcal (2) G-P(sol) polarization free energy of solvation -61.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds