Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.43338 * 2 1 4 4 C 1.54889 * 110.48461 * 122.53547 * 2 1 3 5 5 C 1.54884 * 102.74887 * 156.75306 * 4 2 1 6 6 C 1.54270 * 104.19547 * 322.06202 * 5 4 2 7 7 H 1.09002 * 110.03200 * 264.27052 * 6 5 4 8 8 C 1.50702 * 110.03268 * 142.89355 * 6 5 4 9 9 O 1.21588 * 119.99844 * 241.45384 * 8 6 5 10 10 N 1.32912 * 120.00057 * 61.44953 * 8 6 5 11 11 C 1.33303 * 119.99772 * 179.97438 * 10 8 6 12 12 C 1.40984 * 126.35995 * 0.02562 * 11 10 8 13 13 C 1.35124 * 108.23853 * 179.73588 * 12 11 10 14 14 N 1.36336 * 108.89921 * 0.43465 * 13 12 11 15 15 C 1.46506 * 125.86102 * 179.83063 * 14 13 12 16 16 C 1.50698 * 109.47006 * 274.68860 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 N 1.37285 * 126.35515 * 180.02562 * 11 10 8 25 25 H 0.97001 * 126.34855 * 359.97438 * 24 11 10 26 26 C 1.53869 * 106.59874 * 23.60714 * 6 5 4 27 27 H 1.09001 * 109.47253 * 298.91819 * 1 2 3 28 28 H 1.08999 * 109.47084 * 58.91455 * 1 2 3 29 29 H 1.08998 * 109.46966 * 178.91285 * 1 2 3 30 30 H 1.09009 * 110.75318 * 38.44111 * 4 2 1 31 31 H 1.08996 * 110.92105 * 275.14371 * 4 2 1 32 32 H 1.09000 * 110.49396 * 203.38440 * 5 4 2 33 33 H 1.09003 * 110.60099 * 80.79569 * 5 4 2 34 34 H 1.07997 * 125.87970 * 0.02660 * 12 11 10 35 35 H 1.08001 * 125.55265 * 180.27119 * 13 12 11 36 36 H 1.09001 * 109.47068 * 154.69525 * 15 14 13 37 37 H 1.08993 * 109.47068 * 34.68979 * 15 14 13 38 38 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 39 39 H 1.09008 * 110.03184 * 119.28452 * 26 6 5 40 40 H 1.08999 * 110.02995 * 240.71594 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4919 -1.1940 0.7630 6 6 3.3202 -1.5376 -0.7311 7 1 3.1759 -2.6111 -0.8532 8 6 4.5318 -1.0886 -1.5067 9 8 4.4165 -0.2583 -2.3875 10 7 5.7264 -1.6000 -1.2278 11 6 6.7981 -1.2032 -1.9142 12 6 6.8187 -0.2544 -2.9568 13 6 8.0931 -0.1269 -3.3874 14 7 8.8891 -0.9662 -2.6659 15 6 10.3360 -1.1285 -2.8291 16 6 10.6090 -2.1321 -3.9196 17 1 9.7870 -2.6018 -4.4394 18 6 11.9081 -2.4499 -4.2545 19 7 12.9091 -1.8776 -3.6219 20 14 12.2466 -3.6935 -5.6067 21 1 13.7132 -3.8581 -5.7721 22 1 11.6551 -3.2124 -6.8810 23 1 11.6405 -4.9991 -5.2416 24 7 8.0866 -1.6426 -1.7370 25 1 8.3861 -2.2992 -1.0888 26 6 2.0728 -0.7784 -1.2162 27 1 -0.3634 0.4969 0.8995 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.4593 -1.6595 1.4230 31 1 2.1227 -0.1388 2.1029 32 1 3.8338 -2.0674 1.3183 33 1 4.1912 -0.3670 0.8863 34 1 5.9639 0.2819 -3.3415 35 1 8.4264 0.5306 -4.1767 36 1 10.7698 -1.4815 -1.8936 37 1 10.7810 -0.1704 -3.0974 38 1 12.7334 -1.2316 -2.9200 39 1 2.3437 -0.0852 -2.0126 40 1 1.3222 -1.4834 -1.5736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345297108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = 39.839548 kcal Electronic energy + Delta-G solvation = -20893.902631 eV Core-core repulsion = 17710.304613 eV Total energy + Delta-G solvation = -3183.598018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97991 -39.30764 -37.17306 -34.55671 -33.09498 -31.53832 -31.19755 -30.42554 -28.67939 -26.56796 -25.18370 -23.40761 -22.21228 -21.43729 -20.71774 -19.90496 -18.58648 -17.67149 -16.78244 -16.13123 -15.49426 -15.14786 -14.86618 -14.62658 -14.23150 -14.00637 -13.54925 -13.45842 -13.26912 -12.95760 -12.88333 -12.63059 -12.20057 -11.92515 -11.56489 -11.32172 -10.99051 -10.95299 -10.75117 -10.63732 -10.47693 -10.38795 -10.33290 -10.25006 -9.30505 -9.26562 -9.06416 -8.90396 -8.36493 -7.11197 -6.82831 -4.73318 1.54922 1.92656 2.90595 3.19076 3.21129 3.39545 4.08268 4.16503 4.27020 4.65419 4.73244 4.82312 4.83697 5.02816 5.12021 5.40642 5.47377 5.57240 5.64499 5.66857 5.71315 5.80397 5.85521 5.92750 5.94860 6.03357 6.13982 6.14900 6.20909 6.25927 6.43503 6.45124 6.48233 6.61024 6.68162 7.22331 7.32616 7.49068 7.76405 7.98278 8.22928 8.28110 8.97339 9.34193 10.44975 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045611 B = 0.003001 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.741077 B = 9327.504934 C = 9389.323472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.085 4.085 7 H 0.087 0.913 8 C 0.499 3.501 9 O -0.586 6.586 10 N -0.698 5.698 11 C 0.470 3.530 12 C -0.331 4.331 13 C 0.163 3.837 14 N -0.339 5.339 15 C 0.244 3.756 16 C -0.637 4.637 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.892 5.892 20 Si 1.075 2.925 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.284 1.284 24 N -0.466 5.466 25 H 0.445 0.555 26 C -0.117 4.117 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.269 0.731 39 H 0.087 0.913 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 2.598 5.901 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.137 4.137 6 C -0.107 4.107 7 H 0.105 0.895 8 C 0.285 3.715 9 O -0.468 6.468 10 N -0.462 5.462 11 C 0.220 3.780 12 C -0.363 4.363 13 C 0.017 3.983 14 N -0.124 5.124 15 C 0.127 3.873 16 C -0.674 4.674 17 H 0.083 0.917 18 C -0.175 4.175 19 N -0.526 5.526 20 Si 0.901 3.099 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.210 1.210 24 N -0.188 5.188 25 H 0.292 0.708 26 C -0.155 4.155 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.583 1.571 5.306 13.746 hybrid contribution -1.008 0.765 0.675 1.435 sum -13.591 2.337 5.981 15.031 Atomic orbital electron populations 1.21789 0.95365 1.01519 1.01243 1.21957 0.94986 0.99465 0.95167 0.91042 1.22614 0.96455 0.99593 0.97279 1.22124 0.96340 1.01382 0.93804 1.21436 0.92948 1.00822 0.95473 0.89491 1.20743 0.88258 0.80315 0.82186 1.90484 1.88080 1.34865 1.33390 1.68800 0.97564 1.41409 1.38416 1.19304 0.83948 0.86419 0.88321 1.22498 0.97878 1.10110 1.05822 1.22884 0.90670 0.91191 0.93538 1.47707 1.06763 1.32369 1.25565 1.20093 0.68327 0.99738 0.99099 1.22268 0.96006 1.27590 1.21585 0.91691 1.25985 0.91391 0.99401 1.00728 1.70886 1.33611 1.25860 1.22252 0.83423 0.76665 0.75064 0.74737 1.20247 1.20827 1.21018 1.44552 1.03272 1.39686 1.31313 0.70770 1.22255 0.95346 0.99377 0.98529 0.93033 0.92848 0.92779 0.91586 0.91953 0.91289 0.91760 0.79814 0.79476 0.94038 0.92410 0.92078 0.89435 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.13 37.16 0.34 -0.99 16 2 C -0.10 -1.12 3.45 -88.96 -0.31 -1.43 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.32 6.33 -24.74 -0.16 -1.48 16 5 C -0.10 -1.31 6.29 -25.07 -0.16 -1.47 16 6 C -0.09 -1.30 3.37 -90.65 -0.31 -1.60 16 7 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 8 C 0.50 9.58 6.89 -11.81 -0.08 9.50 16 9 O -0.59 -12.33 12.11 5.29 0.06 -12.27 16 10 N -0.70 -13.73 10.43 -11.59 -0.12 -13.85 16 11 C 0.47 9.13 8.07 -155.19 -1.25 7.87 16 12 C -0.33 -6.16 9.51 -39.65 -0.38 -6.54 16 13 C 0.16 2.75 11.46 -16.66 -0.19 2.56 16 14 N -0.34 -6.30 3.63 -62.23 -0.23 -6.53 16 15 C 0.24 5.02 5.51 -5.19 -0.03 5.00 16 16 C -0.64 -15.27 9.39 -34.44 -0.32 -15.59 16 17 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 18 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 19 N -0.89 -23.31 13.65 55.43 0.76 -22.55 16 20 Si 1.08 22.34 29.90 -169.99 -5.08 17.26 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 N -0.47 -8.36 7.37 31.32 0.23 -8.13 16 25 H 0.45 7.06 8.96 -182.55 -1.64 5.42 16 26 C -0.12 -1.60 5.97 -25.62 -0.15 -1.75 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 8.11 -51.93 -0.42 0.05 16 30 H 0.07 0.65 8.06 -51.92 -0.42 0.23 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 34 H 0.18 3.57 5.77 -52.49 -0.30 3.27 16 35 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 36 H 0.04 0.87 8.01 -51.93 -0.42 0.45 16 37 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 38 H 0.27 6.79 7.22 -40.82 -0.29 6.49 16 39 H 0.09 1.40 6.39 -51.92 -0.33 1.07 16 40 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -28.71 330.17 -9.71 -38.42 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.22 Total: 7.90 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.09 Total: -5.22 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.64 Total: -51.06 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.06 Total: -12.27 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.08 Total: 17.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.71 -9.71 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.261 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds