Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.43338 * 2 1 4 4 C 1.54889 * 110.48461 * 122.53547 * 2 1 3 5 5 C 1.54884 * 102.74887 * 156.75306 * 4 2 1 6 6 C 1.54270 * 104.19547 * 322.06202 * 5 4 2 7 7 H 1.09002 * 110.03200 * 264.27052 * 6 5 4 8 8 C 1.50702 * 110.03268 * 142.89355 * 6 5 4 9 9 O 1.21588 * 119.99844 * 241.45384 * 8 6 5 10 10 N 1.32912 * 120.00057 * 61.44953 * 8 6 5 11 11 C 1.33303 * 119.99772 * 179.97438 * 10 8 6 12 12 C 1.40984 * 126.35995 * 0.02562 * 11 10 8 13 13 C 1.35124 * 108.23853 * 179.73588 * 12 11 10 14 14 N 1.36336 * 108.89921 * 0.43465 * 13 12 11 15 15 C 1.46506 * 125.86102 * 179.83063 * 14 13 12 16 16 C 1.50698 * 109.47006 * 274.68860 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 N 1.37285 * 126.35515 * 180.02562 * 11 10 8 25 25 H 0.97001 * 126.34855 * 359.97438 * 24 11 10 26 26 C 1.53869 * 106.59874 * 23.60714 * 6 5 4 27 27 H 1.09001 * 109.47253 * 298.91819 * 1 2 3 28 28 H 1.08999 * 109.47084 * 58.91455 * 1 2 3 29 29 H 1.08998 * 109.46966 * 178.91285 * 1 2 3 30 30 H 1.09009 * 110.75318 * 38.44111 * 4 2 1 31 31 H 1.08996 * 110.92105 * 275.14371 * 4 2 1 32 32 H 1.09000 * 110.49396 * 203.38440 * 5 4 2 33 33 H 1.09003 * 110.60099 * 80.79569 * 5 4 2 34 34 H 1.07997 * 125.87970 * 0.02660 * 12 11 10 35 35 H 1.08001 * 125.55265 * 180.27119 * 13 12 11 36 36 H 1.09001 * 109.47068 * 154.69525 * 15 14 13 37 37 H 1.08993 * 109.47068 * 34.68979 * 15 14 13 38 38 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 39 39 H 1.09008 * 110.03184 * 119.28452 * 26 6 5 40 40 H 1.08999 * 110.02995 * 240.71594 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4919 -1.1940 0.7630 6 6 3.3202 -1.5376 -0.7311 7 1 3.1759 -2.6111 -0.8532 8 6 4.5318 -1.0886 -1.5067 9 8 4.4165 -0.2583 -2.3875 10 7 5.7264 -1.6000 -1.2278 11 6 6.7981 -1.2032 -1.9142 12 6 6.8187 -0.2544 -2.9568 13 6 8.0931 -0.1269 -3.3874 14 7 8.8891 -0.9662 -2.6659 15 6 10.3360 -1.1285 -2.8291 16 6 10.6090 -2.1321 -3.9196 17 1 9.7870 -2.6018 -4.4394 18 6 11.9081 -2.4499 -4.2545 19 7 12.9091 -1.8776 -3.6219 20 14 12.2466 -3.6935 -5.6067 21 1 13.7132 -3.8581 -5.7721 22 1 11.6551 -3.2124 -6.8810 23 1 11.6405 -4.9991 -5.2416 24 7 8.0866 -1.6426 -1.7370 25 1 8.3861 -2.2992 -1.0888 26 6 2.0728 -0.7784 -1.2162 27 1 -0.3634 0.4969 0.8995 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.4593 -1.6595 1.4230 31 1 2.1227 -0.1388 2.1029 32 1 3.8338 -2.0674 1.3183 33 1 4.1912 -0.3670 0.8863 34 1 5.9639 0.2819 -3.3415 35 1 8.4264 0.5306 -4.1767 36 1 10.7698 -1.4815 -1.8936 37 1 10.7810 -0.1704 -3.0974 38 1 12.7334 -1.2316 -2.9200 39 1 2.3437 -0.0852 -2.0126 40 1 1.3222 -1.4834 -1.5736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345297108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 23.710631 kcal Electronic energy + Delta-G solvation = -20894.602034 eV Core-core repulsion = 17710.304613 eV Total energy + Delta-G solvation = -3184.297420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46132 -40.62349 -38.37311 -36.28091 -34.73299 -32.72181 -32.64923 -31.85902 -29.73307 -28.18670 -26.30150 -25.05966 -23.58621 -22.86673 -21.98638 -20.94648 -19.97189 -19.32610 -18.34500 -17.48563 -16.89432 -16.61653 -16.21003 -15.98801 -15.65501 -15.39176 -14.95827 -14.69970 -14.46216 -14.45265 -14.22508 -13.85770 -13.68971 -13.30265 -12.77691 -12.62195 -12.50430 -12.06528 -11.99541 -11.91645 -11.68346 -11.58555 -11.42842 -11.29419 -10.97379 -10.77245 -10.70680 -10.61011 -9.89363 -8.92767 -8.49047 -6.66997 0.07507 0.44635 1.43859 1.54194 1.55835 1.77512 2.43565 2.63339 2.82070 2.95924 3.43141 3.71148 3.76994 3.80341 4.04097 4.16463 4.34327 4.47995 4.50401 4.51231 4.60587 4.67529 4.69117 4.76884 4.81726 4.94646 5.02681 5.12578 5.14126 5.16636 5.23505 5.34536 5.39314 5.41700 5.52609 5.59818 5.79490 5.92274 6.04863 6.29313 6.45049 6.79714 7.08923 7.83811 8.53600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045611 B = 0.003001 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.741077 B = 9327.504934 C = 9389.323472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.058 0.942 4 C -0.112 4.112 5 C -0.096 4.096 6 C -0.087 4.087 7 H 0.094 0.906 8 C 0.484 3.516 9 O -0.612 6.612 10 N -0.708 5.708 11 C 0.453 3.547 12 C -0.343 4.343 13 C 0.178 3.822 14 N -0.344 5.344 15 C 0.254 3.746 16 C -0.641 4.641 17 H 0.052 0.948 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 1.112 2.888 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.277 1.277 24 N -0.462 5.462 25 H 0.452 0.548 26 C -0.115 4.115 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.176 0.824 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.265 0.735 39 H 0.059 0.941 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 2.272 6.227 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.134 4.134 6 C -0.108 4.108 7 H 0.112 0.888 8 C 0.272 3.728 9 O -0.496 6.496 10 N -0.472 5.472 11 C 0.204 3.796 12 C -0.375 4.375 13 C 0.033 3.967 14 N -0.129 5.129 15 C 0.136 3.864 16 C -0.679 4.679 17 H 0.070 0.930 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.934 3.066 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.203 1.203 24 N -0.185 5.185 25 H 0.301 0.699 26 C -0.153 4.153 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.193 0.807 35 H 0.241 0.759 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.680 1.245 5.651 14.854 hybrid contribution -0.679 0.888 0.572 1.256 sum -14.359 2.133 6.224 15.794 Atomic orbital electron populations 1.21752 0.93324 1.02368 1.01999 1.21943 0.96646 0.98484 0.94389 0.92311 1.22591 0.94664 1.00404 0.97263 1.22103 0.97734 1.00945 0.92595 1.21545 0.91719 1.01282 0.96235 0.88760 1.21519 0.89215 0.79921 0.82168 1.90465 1.88564 1.36011 1.34586 1.68891 0.97877 1.41693 1.38691 1.19557 0.84317 0.86926 0.88817 1.22426 0.98408 1.10473 1.06229 1.23425 0.89689 0.90396 0.93192 1.47610 1.06454 1.32781 1.26055 1.19851 0.69272 0.99319 0.97967 1.22468 0.95497 1.27905 1.22038 0.92968 1.27034 0.91606 1.00334 1.01949 1.70965 1.34209 1.26980 1.23204 0.82936 0.76374 0.73823 0.73458 1.20617 1.19442 1.20294 1.44543 1.02809 1.39786 1.31365 0.69907 1.22233 0.95119 0.99192 0.98711 0.91603 0.92879 0.91823 0.89747 0.90532 0.90520 0.93822 0.80703 0.75879 0.94192 0.91402 0.92462 0.92277 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.13 71.98 0.66 -1.57 16 2 C -0.10 -2.07 3.45 -9.72 -0.03 -2.10 16 3 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -2.17 6.33 31.88 0.20 -1.97 16 5 C -0.10 -2.46 6.29 31.67 0.20 -2.26 16 6 C -0.09 -2.60 3.37 -10.82 -0.04 -2.64 16 7 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 8 C 0.48 18.91 6.89 87.95 0.61 19.52 16 9 O -0.61 -26.51 12.11 -3.99 -0.05 -26.56 16 10 N -0.71 -28.10 10.43 -309.87 -3.23 -31.33 16 11 C 0.45 17.66 8.07 133.83 1.08 18.74 16 12 C -0.34 -12.76 9.51 22.23 0.21 -12.55 16 13 C 0.18 5.78 11.46 83.28 0.95 6.74 16 14 N -0.34 -12.43 3.63 -350.80 -1.27 -13.70 16 15 C 0.25 10.16 5.51 85.63 0.47 10.63 16 16 C -0.64 -30.12 9.39 25.60 0.24 -29.88 16 17 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 19 N -0.92 -47.46 13.65 21.45 0.29 -47.17 16 20 Si 1.11 44.06 29.90 68.60 2.05 46.11 16 21 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 24 N -0.46 -16.40 7.37 -54.81 -0.40 -16.80 16 25 H 0.45 14.22 8.96 -213.28 -1.91 12.31 16 26 C -0.11 -3.07 5.97 31.31 0.19 -2.88 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 30 H 0.08 1.37 8.06 -2.38 -0.02 1.35 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.28 7.85 -2.39 -0.02 1.27 16 34 H 0.18 6.91 5.77 -2.91 -0.02 6.90 16 35 H 0.22 5.41 8.06 -2.91 -0.02 5.38 16 36 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 37 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 38 H 0.27 13.32 7.22 -92.71 -0.67 12.65 16 39 H 0.06 1.93 6.39 -2.38 -0.02 1.92 16 40 H 0.08 1.76 7.82 -2.39 -0.02 1.74 16 Total: -1.00 -61.06 330.17 1.82 -59.24 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.77 Total: 30.31 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.20 Total: -0.10 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.62 Total: -109.00 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.05 Total: 46.11 kcal Total: -61.06 1.82 -59.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.955 kcal (2) G-P(sol) polarization free energy of solvation -61.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds