Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.63219 * 2 1 4 4 C 1.52898 * 109.63115 * 120.59771 * 2 1 3 5 5 C 1.50727 * 109.96351 * 170.05271 * 4 2 1 6 6 C 1.38642 * 118.46527 * 163.30736 * 5 4 2 7 7 C 1.38255 * 120.33218 * 179.86628 * 6 5 4 8 8 F 1.35101 * 120.11251 * 179.97438 * 7 6 5 9 9 C 1.38487 * 119.77398 * 359.96741 * 7 6 5 10 10 C 1.37972 * 119.83602 * 0.06801 * 9 7 6 11 11 C 1.37850 * 121.66209 * 343.25572 * 5 4 2 12 12 C 1.50627 * 121.84247 * 0.25480 * 11 5 4 13 13 H 1.09001 * 109.13859 * 222.34873 * 12 11 5 14 14 C 1.53002 * 109.29609 * 102.86961 * 12 11 5 15 15 N 1.46631 * 110.48928 * 342.55954 * 12 11 5 16 16 C 1.46902 * 110.99748 * 175.95692 * 15 12 11 17 17 C 1.53005 * 109.47483 * 64.33469 * 16 15 12 18 18 C 1.50696 * 109.47521 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99911 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99977 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00152 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47307 * 60.00282 * 22 20 18 24 24 H 1.48497 * 109.46793 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47006 * 299.99951 * 22 20 18 26 26 H 1.09002 * 109.47413 * 173.46422 * 1 2 3 27 27 H 1.08997 * 109.47562 * 293.46722 * 1 2 3 28 28 H 1.08997 * 109.47245 * 53.46365 * 1 2 3 29 29 H 1.09003 * 109.38817 * 290.19978 * 4 2 1 30 30 H 1.08994 * 109.39086 * 49.90020 * 4 2 1 31 31 H 1.08001 * 119.83446 * 359.84790 * 6 5 4 32 32 H 1.07995 * 120.08013 * 180.08616 * 9 7 6 33 33 H 1.08006 * 119.78606 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47480 * 298.95743 * 14 12 11 35 35 H 1.09005 * 109.46992 * 178.96267 * 14 12 11 36 36 H 1.09002 * 109.47404 * 58.96612 * 14 12 11 37 37 H 1.08999 * 109.47529 * 184.33575 * 16 15 12 38 38 H 1.09005 * 109.47496 * 304.33618 * 16 15 12 39 39 H 1.08999 * 109.46824 * 300.00537 * 17 16 15 40 40 H 1.09005 * 109.46633 * 59.99621 * 17 16 15 41 41 H 0.96992 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0436 -0.7330 1.2396 5 6 3.5308 -0.9518 1.1287 6 6 4.2387 -1.2744 2.2763 7 6 5.6037 -1.4861 2.2184 8 9 6.2891 -1.7998 3.3395 9 6 6.2659 -1.3755 1.0072 10 6 5.5605 -1.0536 -0.1340 11 6 4.1909 -0.8395 -0.0763 12 6 3.4668 -0.4868 -1.3492 13 1 3.8402 -1.1143 -2.1584 14 6 3.7262 0.9826 -1.6879 15 7 2.0244 -0.7014 -1.1955 16 6 1.2972 -0.2706 -2.3970 17 6 1.7082 -1.1455 -3.5831 18 6 0.9617 -0.7040 -4.8155 19 1 0.2636 0.1181 -4.7584 20 6 1.1699 -1.3496 -6.0158 21 7 2.0197 -2.3510 -6.0852 22 14 0.2451 -0.8018 -7.5436 23 1 0.5715 0.6167 -7.8379 24 1 0.6440 -1.6510 -8.6947 25 1 -1.2157 -0.9361 -7.3127 26 1 -0.3634 -1.0210 -0.1170 27 1 -0.3634 0.4092 0.9426 28 1 -0.3633 0.6118 -0.8257 29 1 1.8308 -0.1366 2.1268 30 1 1.5415 -1.6967 1.3242 31 1 3.7212 -1.3606 3.2204 32 1 7.3319 -1.5411 0.9560 33 1 6.0777 -0.9680 -1.0783 34 1 3.3470 1.6132 -0.8839 35 1 3.2184 1.2360 -2.6186 36 1 4.7978 1.1453 -1.8028 37 1 0.2249 -0.3688 -2.2275 38 1 1.5370 0.7705 -2.6132 39 1 2.7804 -1.0474 -3.7526 40 1 1.4683 -2.1866 -3.3668 41 1 2.1659 -2.8054 -6.9295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354825654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -26.216257 kcal Electronic energy + Delta-G solvation = -21797.018575 eV Core-core repulsion = 18590.636200 eV Total energy + Delta-G solvation = -3206.382374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.87213 -40.36959 -37.57563 -34.07184 -33.14368 -31.87765 -30.77031 -28.96146 -27.67605 -26.59485 -24.70182 -23.06307 -22.22086 -21.65122 -20.41561 -18.35389 -17.26404 -16.55171 -16.46915 -16.01792 -15.59706 -14.92592 -14.65012 -14.48738 -14.28296 -13.79170 -13.42829 -13.29447 -13.05225 -12.87874 -12.55398 -12.22552 -12.01376 -11.95323 -11.64399 -11.48132 -11.31686 -11.08856 -10.97985 -10.78763 -10.66195 -10.50188 -10.24285 -9.75857 -9.33234 -9.12801 -8.87002 -8.42685 -8.32428 -7.68616 -6.00390 -4.02944 1.20640 1.25119 3.32270 3.37250 3.39039 3.59252 4.23852 4.27887 4.49243 4.66266 4.74731 4.89300 5.08224 5.15175 5.33790 5.36407 5.40498 5.41731 5.56486 5.65669 5.71033 5.78178 5.88025 5.92725 5.95450 6.09499 6.11904 6.16072 6.24427 6.30849 6.32742 6.40352 6.46305 6.64497 6.67435 6.94122 6.98722 7.51151 7.54932 7.77028 7.88070 8.07303 8.42392 9.04219 9.60879 11.10832 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004274 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.358754 B = 6549.357581 C = 7217.518785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.045 0.955 4 C -0.071 4.071 5 C -0.038 4.038 6 C -0.158 4.158 7 C 0.088 3.912 8 F -0.146 7.146 9 C -0.158 4.158 10 C -0.085 4.085 11 C -0.068 4.068 12 C 0.118 3.882 13 H 0.106 0.894 14 C -0.182 4.182 15 N -0.521 5.521 16 C 0.052 3.948 17 C 0.028 3.972 18 C -0.522 4.522 19 H 0.053 0.947 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 4.537 15.604 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.039 4.039 6 C -0.177 4.177 7 C 0.068 3.932 8 F -0.125 7.125 9 C -0.177 4.177 10 C -0.104 4.104 11 C -0.069 4.069 12 C 0.009 3.991 13 H 0.124 0.876 14 C -0.240 4.240 15 N -0.245 5.245 16 C -0.074 4.074 17 C -0.009 4.009 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.312 3.881 15.582 16.627 hybrid contribution -0.055 0.971 -0.794 1.256 sum 4.257 4.852 14.788 16.135 Atomic orbital electron populations 1.21926 0.94204 1.03013 1.01356 1.21674 0.95401 0.95643 0.91062 0.93719 1.20627 0.90597 1.01767 0.97807 1.19461 0.95996 0.96951 0.91474 1.21017 0.92374 1.04632 0.99649 1.17583 0.90277 1.02732 0.82559 1.91468 1.79818 1.90700 1.50474 1.21000 1.00741 1.04431 0.91521 1.20968 0.93474 0.97805 0.98128 1.19818 0.93469 0.98868 0.94728 1.20555 0.88730 0.95728 0.94084 0.87618 1.22452 1.02092 0.97025 1.02469 1.62706 1.02007 1.56255 1.03514 1.22547 0.97630 0.97899 0.89298 1.19087 0.96569 0.95298 0.89954 1.21139 1.24501 1.16666 0.93817 0.92898 1.24972 0.95311 0.94985 0.98884 1.69953 1.35161 1.21964 1.26086 0.86689 0.80317 0.78535 0.82630 1.20323 1.21300 1.20248 0.91439 0.92736 0.91932 0.90738 0.89459 0.85155 0.85017 0.84911 0.92974 0.90500 0.92362 0.91170 0.95463 0.96587 0.95801 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.14 37.16 0.30 -1.59 16 2 C 0.07 1.00 2.48 -67.62 -0.17 0.83 16 3 H 0.04 0.63 6.05 -51.93 -0.31 0.32 16 4 C -0.07 -0.88 5.25 -27.92 -0.15 -1.02 16 5 C -0.04 -0.52 5.77 -104.60 -0.60 -1.13 16 6 C -0.16 -1.98 9.64 -39.43 -0.38 -2.36 16 7 C 0.09 1.13 7.30 -39.48 -0.29 0.85 16 8 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 9 C -0.16 -1.94 10.03 -39.59 -0.40 -2.34 16 10 C -0.09 -1.11 9.52 -39.49 -0.38 -1.49 16 11 C -0.07 -0.99 5.07 -104.61 -0.53 -1.53 16 12 C 0.12 1.92 2.26 -69.05 -0.16 1.77 16 13 H 0.11 1.96 6.59 -51.93 -0.34 1.62 16 14 C -0.18 -2.73 8.40 37.16 0.31 -2.41 16 15 N -0.52 -8.99 4.55 -220.21 -1.00 -9.99 16 16 C 0.05 1.04 3.96 -3.82 -0.02 1.03 16 17 C 0.03 0.71 4.85 -27.88 -0.14 0.57 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.84 6.67 -51.93 -0.35 0.50 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.05 0.73 6.33 -51.93 -0.33 0.40 16 35 H 0.08 1.29 6.22 -51.93 -0.32 0.97 16 36 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.07 1.38 5.90 -51.93 -0.31 1.07 16 38 H 0.03 0.54 5.96 -51.93 -0.31 0.23 16 39 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -29.26 322.49 -9.33 -38.59 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.95 Total: -0.29 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.99 Total: -21.92 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.27 Total: -35.66 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.26 -9.33 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354825654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.377 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds